CmoCh03G004090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G004090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	copper ion transmembrane transporters
Location	Cmo_Chr03: 4856294 .. 4862231 (+)
RNA-Seq Expression	CmoCh03G004090
Synteny	CmoCh03G004090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCTGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTCCCAATCGAATTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGCGTAAGCGGGCTGAGTTTAAGACGGCTGTCTCCGAGCTGGAGAGGCCGTAGGAGACAGTTCCTAGGAGTCATTTCAGTGTGGCTATCATTTTGGCTGAAGAGGAAAGTTCCAATTTGACTCTGTAGTAGAATTGCTGCAGTGAACTGGAAAGGCCACCATGATGAGTTTTTTTGGCTGATCATTGTCTCATAGGCTGGTTAGCTGAGGTAGATGCTACTTTTCAAAGTACGTATGTTATACATTCTTGAGCATATCCTGTTTACATGTGTAGTTTTTGAGATGACTGAGAAATACTTTATTTTCATATCCCCTTTAAATGTCTTGTATAATGCACTAGCTTAGTAACTCTTTTAGTTCTATCTATTTACTCTACAATTTCGTTACTTTAAGTGTGAGATTCCATATTGGTTGAGGAGGAGAATATAACCGTCTTTATAAGAGTGTAGAATCCTCTCTCTAGCTGAAACATTCTTTATAAGAGTGCAGAAACCTCTCCCTAGCACCCTAGCATACACGTTTTAAAAACTTTGAGGGGAAGCACGAAAGGGAAAGCCAAAAGAGACAATATCTGCTAGCGGTGGGTTTGGGGCGTTACAAATGGTATTAGAACTAGTCACTGGGCGATGTGCCAGTGAGGAAGCTGAAACCCGAAGGGGGTGGACACAAGGCGGTGTGCCATCTAGGAAGCTGAGCACCGAAGGAGGGTGGACACGAGGCGGTGCGCCAGCAAGGATGCTGAGTCTTGAAGGAGGGTGGACACGAGGTAGTGTGCCAGCAAGGACGTTGGGCCCCGAAGGGGGGTGGATTAGGGGGTCCTACATCAATTAGAGAAGAGAACGAGTGCCAGTAAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCTACGTCGATTGGGGAGGAGAATGAAACATTCTTTATAAGTGAGTAGTGTTGAACACAACTCACTATGTGAAACACTCGCACACTTTATTAAGACCAATCGTTCGGGGGTGGATTGTGAGATCCCATATCGATTGGGGAGGAGAATGAAACATTCTTTACAAGTGCGTAGTGTTGAACACAACTCTCTGTGGGAAATACTCGTACACTTTATTAAGACGAATCGAGAAGCACACTTTATTAAGACCAATCGAGAAGAGATTTACAAAAACTCTGTAGAAACTACTTTGTATTGCTTGGGATTTCTTGGGATGATAAATATAGTCACTCATACAATGGTTGGGCTTAACTCTATTGGGCTAGTGATGATATTTTAAACACGTAGGAACCTCTCCCTAGCAGATGCATTTTAAAAACCTTAAGAGGAAGCCTATAAGGAAAAGCCCAAAGAGAACAAATCTCTCCCTAGCAAATGCATTTTAAAAACCTTGAGAGCAAGCCTGAAAGGAAAAGCCCAAAGAGAATAGTGTAGCGCTACGAGCTTGGTAGGCTGATGTTAGTTTAGTTAGATTCTCCTTTCATAAAAGCATAAAAAAAGTAGGAGAGATTTTATAACTGCAGAATGCTTCAACCATGAACGGACATGACATTCAACTTTTTGTGGCAATCAAGCTTAACAAGAGAATCCAAAAACTTATAGAAACAGTAAATGAGAAATTCACCATGTAAAATTGTCGCAACAGTTTCAATGGTTTTCTATTAGACCTGTACCTGATTGATCGAACCATCTTACTGATAAGGCAAACCCGAAGTTATTTTATTGAATTCAGAATTTTTTATGCTCCCAAAATTTGTCTAAAAGCCTTTATCACAGTCATCTAAACTTTGTTTAAACAAATGCTCATCAAATGCTCCTATCTTTAGCTTGTGTTGGAGCTCCAACCATCCAAATGCTCATCAAATGCTGTTTAGTGTTTACTCATGCCCGGGCAGTGCCCATGTATTTGCATATTTGTGGGTTGCTCTTTTCATGGCATTTTGGAAATTAGCAGCATGGCGTGGACAGCCTTTCTCAAAGTACATCAACACTGTCTAATAAGGAAGAAGGCATTTCCGACTTGGAGCCGCCAGTCAAAATTTGATTCTCTTTAGCAGTTTTTCTTGAGGTGCATTGGTTGCTCACATCTCTAAGTGGTTATTTTCTTCTTCATAGAATTCATCTTCTTTACCAGTAAATAATGATGTCTCAAATGATCAAGTCCGCCACTTAATTGTATTTTCTTTTCCTTTTTTATTTTCTATTGAATTCAACTTTGAAGTCTCAAGGACTTCATGAAGAATAATACAACTGTTATTATTGGGATTGGTAAAAGAGTGGGTTTGGCCTGATCTATGGATCTCAGATAATATTCTTGCTCAAAGTTTCCCAGGCTATTGAATACCTCAGTGTTGGAATGCTTAAAACAATGATTGATTACTGGATCTAAGAACAAATCTGATGATGAAGATTTAGAATGACTGATCCTTATGGATCTAGGGGTAAAAATAAAAACTGTACTCAAAATTTACGGACCAAAAAGGTATATTTTTTTTATTAAATGTTTCTTTCAATTTTATCTTTCAGGCCTTAACAGTTAATACTATGAAAAAATTCAAGGCCGATATCCAGACATGCTACTTCAACTAAATTGGTGTATGCAGATTATGTCTTGCACCCTTTATGAGTTTATGGCCCCAACCTTTAGGAGAAAAAGCTGAGATCCTTTGGTTTAATGTTATGTGAGCGACCTTTAGTTGTAGTGGCTGGAGAAGAAGAGAAGAATTCATGTATAGATTTTCAGGATTTGGGGTAAGTTTGGGCGTCTGTTGAAATCCAATTGTGTATGTCATAGAATCTGTACAAATGCTCTCTTATATTCCCCAGCAATAACTTGAAGAATTTTTCTGAAGGAACTAAGCATGTGGGTGGGAGATATTTGGGACACCCACCAATATGTATTCTTCTTCGTCTATGATCACTATCAATGGGAACGCGTCTTATAATTCCTTAGGTTTTCGTATATTTCATTATTGGACTTGAAACTCTACATTTCTTATCATTTGCAAATGGAGGAAAGAAGAAGAAGAAACAATACCATTTGAGCATTAAGGAGTATTATACAATTCAAGTCAACCATGAAACCCAAATGAGCTTCATTTTCTTATCTGCGATCCCATAGCTGACCCTAGGTCTATCCTCCAGGGGATTCATATTGTGGACTCCGAAATGGATTGAATGCTGTCATACTTTGGATGAAAACAGGGCTTCTGGCTATCTACTTATTCCAAATCAATCTATTTTTTAATGTTTCCCCTTCTTGGAGCATCATGTCCTGGACACCTTCTTGTGCATTTCCCTTTTGCTTCCTGTTATTGGTTTAATTATCTTGGAAGCTTTTGGTTGGTCTCTGACGCTCCCTAACAACAGTTTTGATCTCCATCTGTTTTGGTGGGTCGCCCCTTCACTGTGTCCAAAGAAGATTTTGTGGCGGTGAAAGGAACAGTCATATTTTCAGTGATATCTCCTCTTCTTTTGATCGTTTCATGGACTCTGTTCTTTCTACTGCTTTGTTTTGTTGCGAAAATAGGCATCCTTTTTAATCATTATAGTTTATCTCTTTTAGTCTCCAATTGGAGAGCTTTCTTGTAATTTACCAATAGCTGTTGGAGTTCTTGCTCCTTTATTTCACAAGTCAATGATATACTCACAAGTATATCAGATTACTTGGTTCTGACCTTGTGGTTGATATCTTAAAATTAAGAGCCCGAATTTCTTATTGTCAATCTTTGTAATTGAGTGCTAAGTAATGGATTGGTGGCGAAGTCACATTTGGTAGCTAGCAATCTCTTTATACCTTTAGTCATTTAATGGCCTCGCATCTATTGATTGACTTGTATTGATAATATTAATGGCGCACATATCTCATGCACTCTATGTCAAATAGACGTATAGGAACTCTAGCATGCTTAGCCTGATAAATTGGAGATATCATTTTCCACAGGGATGGAATGTCTTGACTGGACAAAATCGCTGTACATTTGTTGATGGTTCATTTGTCTTCTTAGCCTAAGAAATATGTTCAATTGGTCCAATAAGATGAATCCATAGTGCCTTTAATATTAACCAATAACCATCAAAATCCCTTCCATCTTCTGGTTTCCACATCCCTTCAATCTTCCGGTTTCCACATCTTTTACATAAAGTGTATTTGCATTGTGGGTTTTTGTGCATCTCTTCTTTAAGCCACTCAAGTTTATCTCAGTGGATTTTGGGTTCTGTCACAAAATGCCACTAGTGGTATTGTTAGATAAGAAATTTGCATGTTGCAAAATAGTTTTTGTCATTGGCTCTTGGTAAGAAGTTGACTTCTGCATAGGTGGGCGGCTATTTCAACCTTCTTGCTTGAGTAGGAAGAATCCATGGATCTCTTGGATAAAGAATAAGATATATTCATCCTGCTATCTCATGGATCTCTTGCATAAACAGCTCGAAAGTGTTTTTAGATTTCAAAAGCTCTCATGGCTTTCTAGGCATTGAGAATTGGTAAGAACTGGTTTATTGTCGAGTTTTATGATCTGTCTCGAAGATAAGGCACTAATCTGAAGCAGTAAACTCCCTTTTATTTGACAAATATAGATTGTCCAGCTACCATTGTAATCACTTCTATTTAATGGATTACTCTGTTTCTTTACAGCATCGGCCTCCAGAAGGTTCAGAACCAGAATACAGATTCCTTATCTTTCATTCGTGCTTAAAGCACCAGCAATCAAAGACCAACGCACGTTCCACAGAGACCCCAATCACAGTAAGTCATTATTATGGCATTGACTGACCAATCTTGGTTTGGATTACTTGGGATCACCATCTCTTTCTCCTACTTGGATAAGGTAAATTTCTTTTGAAGGGTCGTCTTCAACTATCAGAATGATTCAGACCCAAAAGTTTTTCTCTTTTGTGGGCCAGGCAGGTATGTTCTTCTAAGTTGAAACTTTGGTATTGTGACAGTCTAAACCCACCGCTAGCCGATATTATCCTTTTTAGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGTTAGGGAGAGGTATCCACACCCTTATAAAGAATGCTTTGTTCCCCTTTCCAACTAACGTGGGATCTCACAATCTACTCCCTCAGCGTCCTTGCTGGCACTCGAGCCTCTCTCCAATCGATGTAGAATCTCATAATCCACCCCCTTTGGGGGCCCAACGTTCTCGTTGGTACACTGCTCGGTGTCCACTCCCTTGGTTGGAGAGGGGGGTAGATTATGAGATCCCACGTTGGTTGGGGAGGGGAACAAAACATTCCTTACAAGGGTGTGAAAACCTCTCTCTAACAGACGCATTTTAAAATCGTGAGGCTGACGGCGATACATAACGGGCTAAAACGAACAATATGTAGTTGCAGTAGGCTTGGATGGTTGACATAATAAACTATTATGTGTTTAGGATAGGATCGTCCCCTCCACTTAGGAGGAAGAGTTCCAATCTTACTGATGATTGAGGGGACAACACAAGCCACAAGCCACTACCCCTTGTATTAGTTGATATGATATGGCCAAACTATGAACACTACACGTTCTTTAGCTCTAAAGATGATTCCGAGTCAGCTACCAATATATTGTCCTGTCGTTTTTTGTGGTGTTAATCCAAAGAATGCCTTTTTGGGGTTAATTATGAGCCATACGTTTATGCTAATTTGTTGTTTGTTTTGGTTTAATATTTTTCATTTAGATGTAAAAGGAATACCAATTAGGTGTCTCAAGGTTATGGAT

mRNA sequence

ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCTGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTCCCAATCGAATTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGCGCTGGTTAGCTGAGCATCGGCCTCCAGAAGGTTCAGAACCAGAATACAGATTCCTTATCTTTCATTCGTGCTTAAAGCACCAGCAATCAAAGACCAACGCACGTTCCACAGAGACCCCAATCACAGTAAATTTCTTTTGAAGGGTCGTCTTCAACTATCAGAATGATTCAGACCCAAAAGTTTTTCTCTTTTGTGGGCCAGGCAGGTATGTTCTTCTAAGTTGAAACTTTGGTATTGTGACAGTCTAAACCCACCGCTAGCCGATATTATCCTTTTTAGGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGTTAGGGAGAGGTATCCACACCCTTATAAAGAATGCTTTGTTCCCCTTTCCAACTAACGTGGGATCTCACAATCTACTCCCTCAGCGTCCTTGCTGGCACTCGAGCCTCTCTCCAATCGATGTAGAATCTCATAATCCACCCCCTTTGGGGGCCCAACGTTCTCGTTGGTACACTGCTCGGTGTCCACTCCCTTGGTTGGAGAGGGGGGTAGATTATGAGATCCCACGTTGGTTGGGGAGGGGAACAAAACATTCCTTACAAGGGTGTGAAAACCTCTCTCTAACAGACGCATTTTAAAATCGTGAGGCTGACGGCGATACATAACGGGCTAAAACGAACAATATGTAGTTGCAGTAGGCTTGGATGGTTGACATAATAAACTATTATGTGTTTAGGATAGGATCGTCCCCTCCACTTAGGAGGAAGAGTTCCAATCTTACTGATGATTGAGGGGACAACACAAGCCACAAGCCACTACCCCTTGTATTAGTTGATATGATATGGCCAAACTATGAACACTACACGTTCTTTAGCTCTAAAGATGATTCCGAGTCAGCTACCAATATATTGTCCTGTCGTTTTTTGTGGTGTTAATCCAAAGAATGCCTTTTTGGGGTTAATTATGAGCCATACGTTTATGCTAATTTGTTGTTTGTTTTGGTTTAATATTTTTCATTTAGATGTAAAAGGAATACCAATTAGGTGTCTCAAGGTTATGGAT

Coding sequence (CDS)

ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCTGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTCCCAATCGAATTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGCGCTGGTTAGCTGAGCATCGGCCTCCAGAAGGTTCAGAACCAGAATACAGATTCCTTATCTTTCATTCGTGCTTAAAGCACCAGCAATCAAAGACCAACGCACGTTCCACAGAGACCCCAATCACAGTAAATTTCTTTTGA

Protein sequence

MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLSQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRWLAEHRPPEGSEPEYRFLIFHSCLKHQQSKTNARSTETPITVNFF

Homology

[Close]

BLAST of CmoCh03G004090 vs. NCBI nr
Match: KAG6603623.1 (hypothetical protein SDJN03_04232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLSQSNSDRFLGYNPNSNGRRSKKDKQLL 60
          MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLSQSNSDRFLGYNPNSNGRRSKKDKQLL
Sbjct: 1  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLSQSNSDRFLGYNPNSNGRRSKKDKQLL 60

Query: 61 KAWLCRERQIYEMRWLAEHR 81
          KAWLCRERQIYEMR  AE +
Sbjct: 61 KAWLCRERQIYEMRKRAEFK 80

[Close]

BLAST of CmoCh03G004090 vs. NCBI nr
Match: KAG7033810.1 (hypothetical protein SDJN02_03535, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-32
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLSQSNSDRFLGYNPNSNGRRSKKDKQLL 60
          MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLL QSNSDRFLGYNPNSNGRRSKKDKQLL
Sbjct: 1  MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLL 60

Query: 61 KAWLCRERQIYEMRWLAEHR 81
          KAWLCRERQIYEMR  AE +
Sbjct: 61 KAWLCRERQIYEMRKRAEFK 80

[Close]

BLAST of CmoCh03G004090 vs. NCBI nr
Match: XP_038883722.1 (uncharacterized protein LOC120074621 [Benincasa hispida] >XP_038883723.1 uncharacterized protein LOC120074621 [Benincasa hispida] >XP_038883724.1 uncharacterized protein LOC120074621 [Benincasa hispida] >XP_038883725.1 uncharacterized protein LOC120074621 [Benincasa hispida] >XP_038883726.1 uncharacterized protein LOC120074621 [Benincasa hispida])

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-05
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MSILPIPLAIPSPLRPPLFSLSVS-------GWFKPPL-LLSQSNSDRFLGYNPNS---- 60
          M ILPI LAIP+PLRPPLFS S S        +F   + ++S+S +   +G  P +    
Sbjct: 1  MPILPISLAIPNPLRPPLFSFSQSLTGSNHLFYFPNRMPIVSKSTTLIRMGGGPRTYPGG 60

Query: 61 ------NGRRSKKDKQLLKAWLCRERQIYEMRWLAE 79
                   ++KK KQLLKA LCRERQIYEMR  AE
Sbjct: 61 VSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAE 96

[Close]

BLAST of CmoCh03G004090 vs. TAIR 10
Match: AT2G37920.1 (copper ion transmembrane transporters )

HSP 1 Score: 42.0 bits (97), Expect = 4.0e-04
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 52 RSKKDKQLLKAWLCRERQIYEMRWLAE 79
          ++KK KQLLKA LCRERQIYEMR  AE
Sbjct: 70 QAKKQKQLLKARLCRERQIYEMRKRAE 96

The following BLAST results are available for this feature:

BLAST of CmoCh03G004090 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004090 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603623.1	2.9e-33	95.00	hypothetical protein SDJN03_04232, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033810.1	1.5e-32	93.75	hypothetical protein SDJN02_03535, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038883722.1	4.4e-05	46.88	uncharacterized protein LOC120074621 [Benincasa hispida] >XP_038883723.1 unchara...	[more]

BLAST of CmoCh03G004090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37920.1	4.0e-04	77.78	copper ion transmembrane transporters	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G004090.1	CmoCh03G004090.1	mRNA