CmoCh03G002560 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G002560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	H/ACA ribonucleoprotein complex subunit
Location	Cmo_Chr03: 3873164 .. 3875628 (-)
RNA-Seq Expression	CmoCh03G002560
Synteny	CmoCh03G002560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTCACACCTATATAAACCCTAAAAACCCCGGTAAACCCTAACCGAGATTTTGAAGCGACCCTCCTCCGATTATTAAGAAAAGCTCTCTCGTTTTCTCATAGCTGCAGTAGAAGAATGCGGCCACCAAGAGGCGGCGGTGGCTTCCGGGGAGGCCGTGACGGTGGTTTCGGTGGTAGAGGAGGCGGCCGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTTCGTGATGAGGGTCCTCCGTCTGAAGTCGTTGGTTCGTATCTCCCATTACTTCTTCAATTATTCACTGATTTGGGTTTTCCTTCATCTTTTTCTTCTTTGCTACTAGGATATTTTCTGTAGGTGTTTAATGAAATAGTTTTAGTTACAATGCGATGCTCCCTTGGACTCCTTTGGACTATTTAGAATGTTACTGGTATTTTCGTTTGTATAATCGGCATAAACAATGGATTTTGCTTCTGAAACTTTCCTTTTTCTTTAGCAATTTAAATTTGAATACACACAATTTATGTCTATTTTTCTCTAGGATTGTTTTGTTACATTTACTCCCTGTTTTCCCTACTTTGTTCTATTTTATTTATCACTACGTTGATTTTTTCTGTTACAGAGGTTTCTTCTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATCTATCTTCAGAATAAGACACAGATAGGTAAAGTTGATGAGATTTTCGGCCCCATCAATGAATCCGTGAGTCCACTGGCCTTGATTTTGTTAGTTGTTTAGTTTTGGATACAGTTTAGATATATGATAAATCATTGTTTCTTAAACCTGATTGCAGTATTTCTCGATCAAAATGATGGAAGGAATCGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAGCCCAAGTACGTAATCCATCTCTCCCCCCACCTCCAATGAGGTCTTTTTTTCAAGTGATTGCTTATGTCCGTATGTATTGAGTGGTTTTAGAAAACGTAGTTTTATGTCTTGACTGCACGACTAACGTTTTTTGTTCGGTAGTAAGGCTTGGATATAAATTCAGATTAACATGGTATTTATGTTTGATTGTAATGAATCTTGAATGAAGATGGGTGATTAAGTGAAAGATTCTATTATAGTTGAAATTTGGGCATCCAGACTGAGTAAAATCACGAGTGACTGAAAATAGGGTTGCTAAGTTCATGACAGTTTGTTTTATTTTATTTGTTGTTTTAAATTGTGTGTTTAATTCCTAGTTCCTCTATATGATTCCAAATTTTCATAATCCAAACGAACAACATAGCTTCCTATTATGTGGTCTGATGCGTCTATTTCTTATTTCTTCATTGTGCTGCTGTTAGTCTTCAGTGGATTGTGTACATGAGATAAACAATTTAGTTTTGCTTCGACTTTACCACGCTGGATGCGTCTGTGATTTGCCCTTATTGGCTCCTTTTTCTATTCAGTATCCAAATATTGGTAGTCGATCACTATTCATCTAATATGTTTCAAACCGATAGATGGTTTCATAACTTTTTTTAAATTGAAAGAATCAAAGAACTACTAAGCAATGCTTCACAGTCTGTGTTAGATTCTGTATAGAAATAACTCATTATGTCTGTTCATTATTTCAGGGGACAGTTTGCTGCTAGAGGTGGAGGTCGTGGTGGGGGCAGAGGTGGCCGTGGGGCTGGTGGCTTTCGTGGAAGGGGCGGTCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGGTAGAGGAAGATACTAAATTAGCATTATGTAATACTATAATTTTATCAATTTTCCATTTGCAATGTCATTTTGGGAAGCGTTTGCTAGAGTCTTTTGTTTGTACTGTATTTTGTTTGGAATTCAACTTCTCTTTATTGAAGCTACTACCTAATTTAATTCTACCGCTAATTTTAATGTCTTACTAATCAGTGCAAATGAAATTTTCTAGTCTGTGTCTCAATATAATATAGATTGAGTTCGTGGATTATGAAATTTTGATGTCGTTTTTCTCTTATTGCTGAATTTCTTAGTGCTGCGTGTTTTGGACAGAAGAAAGATGACTATTGTCCATATAGTTCTACAGTACTGTTTGAAAACTGTTCTCATTTCTTTTACTGTCAAGAAGTTGGTAAGCCAAGTGAATGGCTGAAGCCTAGAGAGGACTCCTCTCATCCGAAATCAATCCTTAAATCTCCTATCAATAGGTATCAGGAGGAAGCAAAACTACGCCATTTATTTGGCATTTTTTAGAGCTGAGATGGTAGTTCTTGCATGCTTGTCCAATAAAAGTAACTAACGCTATGAAAAAGTGGTCGTTGTATGCAGGACAGCAGGAAAGGAAGCAGCACTAAGGTGA

mRNA sequence

CAACTTCACACCTATATAAACCCTAAAAACCCCGGTAAACCCTAACCGAGATTTTGAAGCGACCCTCCTCCGATTATTAAGAAAAGCTCTCTCGTTTTCTCATAGCTGCAGTAGAAGAATGCGGCCACCAAGAGGCGGCGGTGGCTTCCGGGGAGGCCGTGACGGTGGTTTCGGTGGTAGAGGAGGCGGCCGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTTCGTGATGAGGGTCCTCCGTCTGAAGTCGTTGAGGTTTCTTCTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATCTATCTTCAGAATAAGACACAGATAGGTAAAGTTGATGAGATTTTCGGCCCCATCAATGAATCCTATTTCTCGATCAAAATGATGGAAGGAATCGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAGCCCAAGGGACAGTTTGCTGCTAGAGGTGGAGGTCGTGGTGGGGGCAGAGGTGGCCGTGGGGCTGGTGGCTTTCGTGGAAGGGGCGGTCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGAAGTTGGTAAGCCAAGTGAATGGCTGAAGCCTAGAGAGGACTCCTCTCATCCGAAATCAATCCTTAAATCTCCTATCAATAGGACAGCAGGAAAGGAAGCAGCACTAAGGTGA

Coding sequence (CDS)

ATGCGGCCACCAAGAGGCGGCGGTGGCTTCCGGGGAGGCCGTGACGGTGGTTTCGGTGGTAGAGGAGGCGGCCGTGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGTTTTCGTGATGAGGGTCCTCCGTCTGAAGTCGTTGAGGTTTCTTCTTTCCTTCATGCATGTGAGGGAGATGCAGTCACAAAGCTCACAAATGAGAAGATTCCTTTCTTTAATGCCCCTATCTATCTTCAGAATAAGACACAGATAGGTAAAGTTGATGAGATTTTCGGCCCCATCAATGAATCCTATTTCTCGATCAAAATGATGGAAGGAATCGTCGCCACCTCATATTCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTCGCTAGATTCCTCCCACAGCCCAAGGGACAGTTTGCTGCTAGAGGTGGAGGTCGTGGTGGGGGCAGAGGTGGCCGTGGGGCTGGTGGCTTTCGTGGAAGGGGCGGTCCAAGAGGTGGCAGAGGTGGCCCTCCAAGAGGTGGTGGCCGTGGTGGTGGCTTTAGGGAAGTTGGTAAGCCAAGTGAATGGCTGAAGCCTAGAGAGGACTCCTCTCATCCGAAATCAATCCTTAAATCTCCTATCAATAGGACAGCAGGAAAGGAAGCAGCACTAAGGTGA

Protein sequence

MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGRGGGFREVGKPSEWLKPREDSSHPKSILKSPINRTAGKEAALR

Homology

[Close]

BLAST of CmoCh03G002560 vs. ExPASy Swiss-Prot
Match: Q8VZT0 (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 157/203 (77.34%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGR---GGGR-GRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGF  RGGRDGG GGR   GGGR G GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYSSGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRG---GRGAGG--FRGRGG 180
           ATSYS GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG   GRG GG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGGFREVGK 190
           PRGGR  PPRGG R G FR  G+
Sbjct: 181 PRGGR-FPPRGGSR-GSFRGRGR 201

[Close]

BLAST of CmoCh03G002560 vs. ExPASy Swiss-Prot
Match: Q9FK53 (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-54
Identity = 144/195 (73.85%), Postives = 151/195 (77.44%), Query Frame = 0


Query: 1   MRPPRGGGGF--RGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHA 60
           MRPPRGGG F  RGGRD   GGRG GRGRG GRF    GGG  DEGPPSEVVEV++FLHA
Sbjct: 1   MRPPRGGGSFRGRGGRDN--GGRGRGRGRGRGRF----GGGNYDEGPPSEVVEVATFLHA 60

Query: 61  CEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSG 120
           CEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSYS G
Sbjct: 61  CEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQG 120

Query: 121 DKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRG---GRGAGGFRGRGGPRG-GRGGP 180
           DKF+I P KLLPL+RFLPQPKGQ   RG GR   RG    RG G FRGRG PRG  RG  
Sbjct: 121 DKFFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAPRGASRGFQ 180

Query: 181 PRGGGRGGGFREVGK 190
           PRGG R GGFR  G+
Sbjct: 181 PRGGPR-GGFRGRGR 188

[Close]

BLAST of CmoCh03G002560 vs. ExPASy Swiss-Prot
Match: Q5RJV1 (H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-40
Identity = 127/201 (63.18%), Postives = 143/201 (71.14%), Query Frame = 0


Query: 5   RGGGGFRGGRDGGFGGRGGGR---GRGGGRFG-GRGGG------GFRDEGPPSEVVEVSS 64
           RGGGG RGG  GGFGGRGGGR   G+GGGR G GRGGG      G  D+GPP  VVEV  
Sbjct: 11  RGGGGGRGG--GGFGGRGGGRGGYGQGGGRGGFGRGGGRGGFNRGGYDQGPPESVVEVGE 70

Query: 65  FLHACEGDAVTK-LTNE-KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVA 124
           F+H CE D V K +T E ++P+FNAPIYL+NK QIGKVDEIFG + + YFSIK+ E + A
Sbjct: 71  FMHPCEDDVVCKCITQENRVPYFNAPIYLENKEQIGKVDEIFGQLRDFYFSIKLSENMKA 130

Query: 125 TSYSSGDKFYIDPAKLLPLARFLPQPKGQFA-ARGGGRGGGR-GGRGAGGFRGRGGP-RG 184
           +S+    KFYIDPAKLLPL RFLP+P G+    RGGGRGGGR GGRG GG RG GG  RG
Sbjct: 131 SSFKKLQKFYIDPAKLLPLQRFLPRPPGEKGPPRGGGRGGGRGGGRGRGGGRGGGGGFRG 190

Query: 185 GRGGPPRGGG-----RGGGFR 186
           GRGG   GGG     RGGGFR
Sbjct: 191 GRGGGFGGGGGFRGSRGGGFR 209

[Close]

BLAST of CmoCh03G002560 vs. ExPASy Swiss-Prot
Match: Q2HH48 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-39
Identity = 115/199 (57.79%), Postives = 130/199 (65.33%), Query Frame = 0


Query: 20  GRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACEGDAVTKLTNEKIPFFNAPI 79
           GRGGG G GGGR GGRGG   RD GPP+ V+E+  F+HACEG+ V + TN K+P FNAPI
Sbjct: 9   GRGGG-GFGGGRGGGRGGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPI 68

Query: 80  YLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKFYIDPAKLLPLARFLPQPK 139
           YL+NKT +GKVDE+ GPIN+ YF+IK  EGI ATS+  GDKFYI   KLLPL RFLP+PK
Sbjct: 69  YLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 128

Query: 140 -------------------------GQFAARGGGRGGGRGG----RGAGGF-----RGRG 184
                                    G   +RGGGRGGGRGG    RG GGF      GRG
Sbjct: 129 PPPGTVSKVKKPSRGGAARGGRGGPGGGFSRGGGRGGGRGGFGGSRGGGGFGGGFGGGRG 188

[Close]

BLAST of CmoCh03G002560 vs. ExPASy Swiss-Prot
Match: Q9CY66 (H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus OX=10090 GN=Gar1 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-37
Identity = 112/185 (60.54%), Postives = 130/185 (70.27%), Query Frame = 0


Query: 6   GGGGFRGGRDGGFGG-RGGGRGRGGGRFGGRGG-GGFRDEGPPSEVVEVSSFLHACEGDA 65
           GGG FRGG  GG G  RGGGRG G GR GGRGG   F+D+GPP  VV +  F+H CE D 
Sbjct: 37  GGGSFRGGGGGGGGSFRGGGRG-GFGRGGGRGGFNKFQDQGPPERVVLLGEFMHPCEDDI 96

Query: 66  VTKLTNE--KIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDKF 125
           V K T E  K+P+FNAP+YL+NK Q+GKVDEIFG + + YFS+K+ E + A+S+    KF
Sbjct: 97  VCKCTTEENKVPYFNAPVYLENKEQVGKVDEIFGQLRDFYFSVKLSENMKASSFKKLQKF 156

Query: 126 YIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGG-GR 185
           YIDP KLLPL RFLP+P G+     GG GGGRGGRG G  RG GG  GGRGG  RGG G 
Sbjct: 157 YIDPYKLLPLQRFLPRPPGEKGPPRGGGGGGRGGRGGG--RGGGGRGGGRGGGFRGGRGG 216

[Close]

BLAST of CmoCh03G002560 vs. ExPASy TrEMBL
Match: A0A6J1GF54 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111453623 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 186/189 (98.41%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR 180
           FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR 180

Query: 181 GGGFREVGK 190
           GGGFR  G+
Sbjct: 181 GGGFRGRGR 189

[Close]

BLAST of CmoCh03G002560 vs. ExPASy TrEMBL
Match: A0A6J1IKQ7 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111478321 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.9e-87
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPP+EVVE+SSFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPAEVVEISSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFAA----RGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180
           FYIDPAKLLPLARFLPQPKGQFAA    RGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180

Query: 181 GGGRGGGFREVGK 190
           GGGRGGGFR  G+
Sbjct: 181 GGGRGGGFRGRGR 193

[Close]

BLAST of CmoCh03G002560 vs. ExPASy TrEMBL
Match: A0A6J1HPE3 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466108 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.1e-85
Identity = 183/197 (92.89%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRG----RGGGRFGGRGGGGFRDEGPPSEVVEVSSFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRG    RGGGRFGGRGGGGFRDEGPPSEVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAA----RGGGRGGGRGGRGAGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQFAA    RGGGRGGGRGGRG GGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFREVGK 190
           GPPRGGGRGGGFR  G+
Sbjct: 181 GPPRGGGRGGGFRGRGR 197

[Close]

BLAST of CmoCh03G002560 vs. ExPASy TrEMBL
Match: A0A6J1EGP8 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111432388 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.1e-85
Identity = 183/197 (92.89%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRG----RGGGRFGGRGGGGFRDEGPPSEVVEVSSFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRG    RGGGRFGGRGGGGFRDEGPPSEVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAA----RGGGRGGGRGGRGAGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQFAA    RGGGRGGGRGGRG GGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFREVGK 190
           GPPRGGGRGGGFR  G+
Sbjct: 181 GPPRGGGRGGGFRGRGR 197

[Close]

BLAST of CmoCh03G002560 vs. ExPASy TrEMBL
Match: A0A6J1DU94 (H/ACA ribonucleoprotein complex subunit OS=Momordica charantia OX=3673 GN=LOC111023158 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.4e-82
Identity = 179/197 (90.86%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGR---GRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLH 60
           MRPPRGGGGFRGGRDGGFGGRGGGR   GRGGGRFGGRGGGGFRDEGPP+EVVEVS+FLH
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGRGGGRFGGRGGGGFRDEGPPAEVVEVSTFLH 60

Query: 61  ACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSS 120
           ACEGDAVT+LTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+S
Sbjct: 61  ACEGDAVTRLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYTS 120

Query: 121 GDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGG-----RGAGGFRGRGGPRGGRG 180
           GDKFYIDPAKLLPLARFLPQPKGQ AARGGGRGGGRGG      G GGFRGRGGPRGGRG
Sbjct: 121 GDKFYIDPAKLLPLARFLPQPKGQSAARGGGRGGGRGGFRGGRGGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFREVGK 190
           GPPRGGGRGGGFR  G+
Sbjct: 181 GPPRGGGRGGGFRGRGR 197

[Close]

BLAST of CmoCh03G002560 vs. NCBI nr
Match: XP_022950557.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >KAG6603490.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.3 bits (869), Expect = 2.4e-89
Identity = 186/189 (98.41%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR 180
           FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR 180

Query: 181 GGGFREVGK 190
           GGGFR  G+
Sbjct: 181 GGGFRGRGR 189

[Close]

BLAST of CmoCh03G002560 vs. NCBI nr
Match: XP_023544656.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo] >XP_023544657.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-87
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFAA----RGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180
           FYIDPAKLLPLARFLPQPKGQFAA    RGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180

Query: 181 GGGRGGGFREVGK 190
           GGGRGGGFR  G+
Sbjct: 181 GGGRGGGFRGRGR 193

[Close]

BLAST of CmoCh03G002560 vs. NCBI nr
Match: XP_022978292.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 332.0 bits (850), Expect = 3.9e-87
Identity = 184/193 (95.34%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPP+EVVE+SSFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPAEVVEISSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFAA----RGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180
           FYIDPAKLLPLARFLPQPKGQFAA    RGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR
Sbjct: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPR 180

Query: 181 GGGRGGGFREVGK 190
           GGGRGGGFR  G+
Sbjct: 181 GGGRGGGFRGRGR 193

[Close]

BLAST of CmoCh03G002560 vs. NCBI nr
Match: KAG7033669.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.9 bits (847), Expect = 8.6e-87
Identity = 184/189 (97.35%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60
           MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHACE 60

Query: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120
           GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK
Sbjct: 61  GDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSGDK 120

Query: 121 FYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR 180
           FYIDPAKLLPLARFLPQPK  FAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR
Sbjct: 121 FYIDPAKLLPLARFLPQPK-YFAARGGGRGGGRGGRGAGGFRGRGGPRGGRGGPPRGGGR 180

Query: 181 GGGFREVGK 190
           GGGFR  G+
Sbjct: 181 GGGFRGRGR 188

[Close]

BLAST of CmoCh03G002560 vs. NCBI nr
Match: XP_022925015.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >XP_022966461.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima] >XP_023518192.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-84
Identity = 183/197 (92.89%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MRPPRGGGGFRGGRDGGFGGRGGGRG----RGGGRFGGRGGGGFRDEGPPSEVVEVSSFL 60
           MRPPRGGGGFRGGRDGGFGGRGGGRG    RGGGRFGGRGGGGFRDEGPPSEVVEVS+FL
Sbjct: 1   MRPPRGGGGFRGGRDGGFGGRGGGRGGGGFRGGGRFGGRGGGGFRDEGPPSEVVEVSTFL 60

Query: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYS 120
           HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSY+
Sbjct: 61  HACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYA 120

Query: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAA----RGGGRGGGRGGRGAGGFRGRGGPRGGRG 180
           SGDKFYIDPAKLLPLARFLPQPKGQFAA    RGGGRGGGRGGRG GGFRGRGGPRGGRG
Sbjct: 121 SGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRG 180

Query: 181 GPPRGGGRGGGFREVGK 190
           GPPRGGGRGGGFR  G+
Sbjct: 181 GPPRGGGRGGGFRGRGR 197

[Close]

BLAST of CmoCh03G002560 vs. TAIR 10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 231.1 bits (588), Expect = 8.7e-61
Identity = 157/203 (77.34%), Postives = 164/203 (80.79%), Query Frame = 0


Query: 1   MRPP-RGGGGF--RGGRDGGFGGR---GGGR-GRGGGRFGGRGG--GGFRDEGPPSEVVE 60
           MRPP RGGGGF  RGGRDGG GGR   GGGR G GGGRFGG GG  GGFRDEGPPSEVVE
Sbjct: 1   MRPPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVE 60

Query: 61  VSSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIV 120
           V++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMMEGIV
Sbjct: 61  VATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIV 120

Query: 121 ATSYSSGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRG---GRGAGG--FRGRGG 180
           ATSYS GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG   GRG GG   RGRG 
Sbjct: 121 ATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRGRGA 180

Query: 181 PRGGRGGPPRGGGRGGGFREVGK 190
           PRGGR  PPRGG R G FR  G+
Sbjct: 181 PRGGR-FPPRGGSR-GSFRGRGR 201

[Close]

BLAST of CmoCh03G002560 vs. TAIR 10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-55
Identity = 144/195 (73.85%), Postives = 151/195 (77.44%), Query Frame = 0


Query: 1   MRPPRGGGGF--RGGRDGGFGGRGGGRGRGGGRFGGRGGGGFRDEGPPSEVVEVSSFLHA 60
           MRPPRGGG F  RGGRD   GGRG GRGRG GRF    GGG  DEGPPSEVVEV++FLHA
Sbjct: 1   MRPPRGGGSFRGRGGRDN--GGRGRGRGRGRGRF----GGGNYDEGPPSEVVEVATFLHA 60

Query: 61  CEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYSSG 120
           CEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM EGIVATSYS G
Sbjct: 61  CEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQG 120

Query: 121 DKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRG---GRGAGGFRGRGGPRG-GRGGP 180
           DKF+I P KLLPL+RFLPQPKGQ   RG GR   RG    RG G FRGRG PRG  RG  
Sbjct: 121 DKFFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRGPPRGRGNFRGRGAPRGASRGFQ 180

Query: 181 PRGGGRGGGFREVGK 190
           PRGG R GGFR  G+
Sbjct: 181 PRGGPR-GGFRGRGR 188

The following BLAST results are available for this feature:

BLAST of CmoCh03G002560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT0	1.2e-59	77.34	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
Q9FK53	1.5e-54	73.85	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
Q5RJV1	6.3e-40	63.18	H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=gar1 ...	[more]
Q2HH48	1.1e-39	57.79	H/ACA ribonucleoprotein complex subunit GAR1 OS=Chaetomium globosum (strain ATCC...	[more]
Q9CY66	2.9e-37	60.54	H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus OX=10090 GN=Gar1 PE=1 ...	[more]

BLAST of CmoCh03G002560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GF54	1.2e-89	98.41	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1IKQ7	1.9e-87	95.34	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111478...	[more]
A0A6J1HPE3	5.1e-85	92.89	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EGP8	5.1e-85	92.89	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1DU94	1.4e-82	90.86	H/ACA ribonucleoprotein complex subunit OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CmoCh03G002560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950557.1	2.4e-89	98.41	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
XP_023544656.1	1.3e-87	96.37	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pep...	[more]
XP_022978292.1	3.9e-87	95.34	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita max...	[more]
KAG7033669.1	8.6e-87	97.35	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]
XP_022925015.1	1.1e-84	92.89	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]

BLAST of CmoCh03G002560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03920.1	8.7e-61	77.34	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	1.1e-55	73.85	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 45..136 e-value: 9.7E-42 score: 142.7
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 40..140 e-value: 7.0E-35 score: 120.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 1..189
None	No IPR available	PANTHER	PTHR23237:SF12	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT	coord: 1..189
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 50..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G002560.1	CmoCh03G002560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0000454	snoRNA guided rRNA pseudouridine synthesis
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:1990381	ubiquitin-specific protease binding