CmoCh03G001950 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein 5, chloroplastic
LocationCmo_Chr03: 3253755 .. 3256028 (+)
RNA-Seq ExpressionCmoCh03G001950
SyntenyCmoCh03G001950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACACGATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGCGAATTTCGCCGCCCTGAGTAAGTATCTTCCGCTTCCCCTCCTGGACCTTCCTTTCCGCGCCTCTGTTTGACGGGATCGAACCTAATCCCCATGTTTTTGTCTAATTCTGTATATTCATTTCTCTTTGTTCTAAAGTTTTTTCGCTGCGTGTTCATTTTCGCGAACTTGAGAAACTATTTTTTTGTGCTTGATTGAAAGAGTTTCCTCGCAGTCATTTTCAAAACAGTTGGTATCTGTGTGTAGAGACTGTCGATTTTCGCTTTCCTGATTTTGTATGCTGAATGTTCTGTTACTTGTTCATCATCCTCAATTTGATGTCTAGATTACAGTTTCGTAGTCATGAAATGCGGTTGAATGTGTGTCACTAAACCGAAGAGAGATTGTTTGGAGTGAATGTAATCTTTTATGCATATTCTTAATCCGTTTGAATGTTAATTTGATTCATGTAATGCCGGATAGGAGAAATTAACATTATAAGCATTCCTCGTATCCCATGGTTTGATAGACAACAATTTAAAAAATGAACTTAATCAAATGCTTGAGCGGATAGGTTAGAAGATATTTAACCTCTGGTTATATTATGAGCTTGTTGGTGAAACTTTGATTATGTTATGACCTCTGATTATATGTTGAAAACTTTAACTTTAACTTTGATTATAAACTTTAACTTTGATTATATTATGAGCTTGTTGGTGAAACTTTAAACTTAACTTTAAAAAAAAATCTCTAGTAGATTTCAACATATTAACTAGTCCTAAACTATTATCTGTGTTTAATTGGTCTTGAACATTAAAAACGTCTCAAATATCAAGGCTTATTTGACACAAAATTAAAAGAATAGAATTTGTTAGATACTTTTTGAAACTAAAGGTTCTATTAGACACAATTCTTAGAGCTTAGAGATCAAAGTCATACATATTCTTGGCTTGGAATGGTTAATTCCCTACATTTTATGTATCTTAGCTCAATTTCCACTCCTTTATTGTGGTTTCCATTTCAGATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTATTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCCTGCAGAAGCTAAAAAGGAGGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGATAATCTTCAGCTCCTTCAATTCTTGCAGGTTTAGAGGTGACCCCATTTCTCCTCATTGCTTCCAACTTTCTCTGTCTAATTTCTTTATACTTTCATGAAAATGTACTTGCTTCTTTATGTATCTGAAAGAATCCAGTGAGTGATGAAATGTGCAAATTGCGCTCTTAGTTTTGAATGACTAATGGCCAGTTGAAAGGAACTGAATACTTGCCTCTAGACTTTGGTTAGAAAAAAAACCTTGCACAAAGGCCATATCTTAGGAACTTAGACTGTCCAAATTGGTTCATTAGAAGCTTTTTTTCCTTTTAAATGTACGTCGAGATCAACGCCCCCGTCGAGGGACAAGTTTGAGCTCGACGTATCTGTCTTAATTTGTCACTGACTGGTTGCATAGAGATGAAAGCTAGGGAGAATAGACACTTGAACAAACAAAGAATTCTGGCCTTTGATGAAGATTGAATAGTATGTAGGGATAGGAAGTATCTGCTTTTACATGCTTTGTAGGAAAGGATGGCACTCATGATAGCAACTCAAATTTTGAATATCTTGTCTTTTAGGATTTAGAGCTGATTTGCCTTTCTGCTGTGGATAAGCTTTGTTCTATTAATGTGTTTGAGAACCCGAACCCGAACCCGTCAATGGATGGAAGCTTTTAGAGTTTGGTATAACTTTTAACCCATTAAGGACTCATCAAAATTTCCGATTCAAACCTCCGATCTCTTAATCAAGGACATATGTCTTAACTACTTCCTTAGGATGATTTTTAAGTTACCGATTTGTGTATTATTCAGTTATATGGTTA

mRNA sequence

AAAAACACGATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGCGAATTTCGCCGCCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTATTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCCTGCAGAAGCTAAAAAGGAGGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGATTTAGAGCTGATTTGCCTTTCTGCTGTGGATAAGCTTTGTTCTATTAATGTGTTTGAGAACCCGAACCCGAACCCGTCAATGGATGGAAGCTTTTAGAGTTTGGTATAACTTTTAACCCATTAAGGACTCATCAAAATTTCCGATTCAAACCTCCGATCTCTTAATCAAGGACATATGTCTTAACTACTTCCTTAGGATGATTTTTAAGTTACCGATTTGTGTATTATTCAGTTATATGGTTA

Coding sequence (CDS)

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCATCGCCGTCGCCGTCATGTTTTCCAGCGAATTTCGCCGCCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTATTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCCTGCAGAAGCTAAAAAGGAGGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAGAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGATTTAGAGCTGATTTGCCTTTCTGCTGTGGATAAGCTTTGTTCTATTAATGTGTTTGAGAACCCGAACCCGAACCCGTCAATGGATGGAAGCTTTTAG

Protein sequence

MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNDLELICLSAVDKLCSINVFENPNPNPSMDGSF
Homology
[Close]
BLAST of CmoCh03G001950 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-14
Identity = 78/159 (49.06%), Postives = 90/159 (56.60%), Query Frame = 0 

Query: 4   LLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N L  SL S + S S     SPS     FA  + +L +KP   + K  N V L   
Sbjct: 3   LLCFNSLP-SLSSLSSSSSSRLLQSPS-----FA--SPVLSLKPNAVESK--NRVSLSAY 62

Query: 64  SFVENTVSFIVK-AASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQER---LEQ 123
           S   +    +VK AAS +D        EPK    A    V VDKLPLESK  +    LE 
Sbjct: 63  SLNSSHGRIVVKAAASGVDGAEPESKEEPKTVVAA----VPVDKLPLESKEAKEKLLLEL 122

Query: 124 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KN
Sbjct: 123 RLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKN 147

[Close]
BLAST of CmoCh03G001950 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-14
Identity = 70/161 (43.48%), Postives = 93/161 (57.76%), Query Frame = 0 

Query: 4   LLCSNPLSISLHSSTFSPSPSPSPSPSC-----FPANFAALNSMLLMKPTGFQPKHFNGV 63
           LLC N  + +  +S+ S  P P+ +P        P N   L    ++ P   +P+     
Sbjct: 3   LLCFNSFTTTPVTSSSSLFPHPTANPISRVRIGLPTN--CLKGFRILTPIVQKPR----- 62

Query: 64  RLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKED--VSVDKLPLESKLQER 123
                   +N++ FI  AA+  D+       E    +E+KKE   VSVDKLPLESKL+ER
Sbjct: 63  --------KNSI-FIASAAAGADSNVADGVEE----SESKKESDVVSVDKLPLESKLKER 122

Query: 124 LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLK 158
            E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+
Sbjct: 123 EERMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLE 143

[Close]
BLAST of CmoCh03G001950 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-14
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 0 

Query: 10  LSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNPSFVENT 69
           LS  L  S+  P  S + S S FP     ++  LL       P     +    P   +  
Sbjct: 4   LSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALL-------PSFGQRLVAHGPVIAQKR 63

Query: 70  VSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKARMKLAKKI 129
            + +   ++  + T   D ++ K     ++ ++SV  LPLESKLQ +LEQK +MK+AKKI
Sbjct: 64  GTVVAMVSAAAEETAGEDGDQSK----VEEANISVQNLPLESKLQLKLEQKIKMKMAKKI 123

Query: 130 RLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           RLRR RL+RKR LRK+G WPPSKMKKLKN
Sbjct: 124 RLRRNRLMRKRKLRKRGAWPPSKMKKLKN 141

[Close]
BLAST of CmoCh03G001950 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.8e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 158

[Close]
BLAST of CmoCh03G001950 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.5e-69
Identity = 149/158 (94.30%), Postives = 150/158 (94.94%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSISLHSST   SPSPSPSPSCFP NF+ALNSM LMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTL--SPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RNPSFVENTVSFIVKAASEID TGETDSNEPKP AEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]
BLAST of CmoCh03G001950 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.7e-61
Identity = 136/158 (86.08%), Postives = 141/158 (89.24%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SL+SS F  SPSPSPSPSCFP   AA +S+LLM+P GFQPK FNGVRL
Sbjct: 1   MAFLLCSNPLSTSLYSSPF--SPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
            RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 TRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]
BLAST of CmoCh03G001950 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 3.1e-54
Identity = 126/157 (80.25%), Postives = 133/157 (84.71%), Query Frame = 0 

Query: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLR 61
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62

Query: 62  NPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKA 121
           N SFVENT S +VKAASE DATGETDS++ +P AEAKKEDV VDKLPLESKLQERLEQKA
Sbjct: 63  NHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 152

[Close]
BLAST of CmoCh03G001950 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 4.1e-51
Identity = 121/157 (77.07%), Postives = 127/157 (80.89%), Query Frame = 0 

Query: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLR 61
           +FLLCSNPLS S H ST  P         CFP   A  +SMLLMKP GFQPK FNGVRLR
Sbjct: 3   SFLLCSNPLSTSFHFSTLHP---------CFPPTSAIPSSMLLMKPIGFQPKTFNGVRLR 62

Query: 62  NPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKA 121
           N  FVENT S +VKAASE DATGE DS+E +P AEAKKEDV VDKLPLESKLQERLEQKA
Sbjct: 63  NHPFVENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122

Query: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKN
Sbjct: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKN 150

[Close]
BLAST of CmoCh03G001950 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 5.9e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 158

[Close]
BLAST of CmoCh03G001950 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 2.1e-73
Identity = 154/158 (97.47%), Postives = 154/158 (97.47%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFP NFAALNSMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RNPSFVENTVSF VKAASEIDATGETDSNEPKP AEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 158

[Close]
BLAST of CmoCh03G001950 vs. NCBI nr
Match: KAG7013851.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 8.8e-72
Identity = 154/158 (97.47%), Postives = 154/158 (97.47%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSISLHSSTF  SPSPSPSPSCFPANFA LNSMLLMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RNPSFVENTVSFIVKAASEIDATGETDSNEPKP AEAKKEDVSVDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]
BLAST of CmoCh03G001950 vs. NCBI nr
Match: XP_022967912.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 3.1e-69
Identity = 149/158 (94.30%), Postives = 150/158 (94.94%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLSISLHSST   SPSPSPSPSCFP NF+ALNSM LMKPTGFQPKHFNGVRL
Sbjct: 1   MAFLLCSNPLSISLHSSTL--SPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RNPSFVENTVSFIVKAASEID TGETDSNEPKP AEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNPSFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]
BLAST of CmoCh03G001950 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-60
Identity = 136/158 (86.08%), Postives = 141/158 (89.24%), Query Frame = 0 

Query: 1   MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRL 60
           MAFLLCSNPLS SL+SS F  SPSPSPSPSCFP   AA +S+LLM+P GFQPK FNGVRL
Sbjct: 1   MAFLLCSNPLSTSLYSSPF--SPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRL 60

Query: 61  RNPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQK 120
           RN SFVENT S IVKA SEID TGETDSNEP+PPAEAKKEDV VDKLPLESKLQERLEQK
Sbjct: 61  RNVSFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQK 120

Query: 121 ARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
            RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN
Sbjct: 121 TRMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 156

[Close]
BLAST of CmoCh03G001950 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-15
Identity = 78/159 (49.06%), Postives = 90/159 (56.60%), Query Frame = 0 

Query: 4   LLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLRNP 63
           LLC N L  SL S + S S     SPS     FA  + +L +KP   + K  N V L   
Sbjct: 3   LLCFNSLP-SLSSLSSSSSSRLLQSPS-----FA--SPVLSLKPNAVESK--NRVSLSAY 62

Query: 64  SFVENTVSFIVK-AASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQER---LEQ 123
           S   +    +VK AAS +D        EPK    A    V VDKLPLESK  +    LE 
Sbjct: 63  SLNSSHGRIVVKAAASGVDGAEPESKEEPKTVVAA----VPVDKLPLESKEAKEKLLLEL 122

Query: 124 KARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKN 159
           + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KN
Sbjct: 123 RLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKN 147

The following BLAST results are available for this feature:
BLAST of CmoCh03G001950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LER73.0e-1449.0650S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ... [more]
P118915.1e-1443.4850S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV... [more]
P276845.1e-1440.9450S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR... [more]
BLAST of CmoCh03G001950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GE622.8e-76100.0050S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1HS411.5e-6994.3050S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1DNT95.7e-6186.0850S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A0A0L3F43.1e-5480.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1[more]
A0A1S3C2X04.1e-5177.0750S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P... [more]
BLAST of CmoCh03G001950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949869.15.9e-76100.0050S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata][more]
XP_023543496.12.1e-7397.4750S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG7013851.18.8e-7297.4750S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper... [more]
XP_022967912.13.1e-6994.3050S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima][more]
XP_022154476.11.2e-6086.0850S ribosomal protein 5, chloroplastic [Momordica charantia][more]
BLAST of CmoCh03G001950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56910.12.1e-1549.06plastid-specific 50S ribosomal protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..102
NoneNo IPR availablePANTHERPTHR34678:SF150S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 1..158
IPR04030750S ribosomal protein 5, chloroplasticPANTHERPTHR3467850S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 1..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001950.1CmoCh03G001950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome