CmoCh03G001830 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 2845694 .. 2845954 (+)
RNA-Seq ExpressionCmoCh03G001830
SyntenyCmoCh03G001830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTTTACCCGAAGCCATCGTCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

mRNA sequence

ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTTTACCCGAAGCCATCGTCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

Coding sequence (CDS)

ATGGCGGGGCTCCAATACAACTTCTTCCCGACCGATCTCCTTTACCCGAAGCCATCGTCGTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGGACGCCATTAATAGGGCAAGTGTGACCTTCAAAAAACCTGTAAGAGGCAATCAAGATGAAGAAGATGATCATGGTGATGGAGCCAAAAGCTTGAGCATTCAAAAGGGTGATAGGTCACCCTTGATTCTCAAGCATCAAGTCAAGAATGATTCTTCAACTCTCTGA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGAKSLSIQKGDRSPLILKHQVKNDSSTL
Homology
BLAST of CmoCh03G001830 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGD 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGD 60

Query: 61 GAKS--LSIQKGDRSPLILKHQVKNDSST 86
            KS  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 EPKSRLMISQKVDRSPLILKHQIKSTSSS 82

BLAST of CmoCh03G001830 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDG 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK  +RGN+ EED DHGD 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDE 60

Query: 61 AKS--LSIQKGDRSPLILKHQVKNDSST 86
           KS   S +  DRSPLILKHQ K+ SST
Sbjct: 61 RKSRLFSQKVADRSPLILKHQSKSTSST 81

BLAST of CmoCh03G001830 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDG 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK  +RGN+ EED DHGD 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDE 60

Query: 61 AKS--LSIQKGDRSPLILKHQVKNDSST 86
           KS   S +  DRSPLILKHQ K+ SST
Sbjct: 61 RKSRLFSQKVADRSPLILKHQSKSTSST 81

BLAST of CmoCh03G001830 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 1.6e-36
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60
          MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60

Query: 61 KSLSIQKGDRSPLILKHQVKNDSSTL 87
          KSLSIQKGDRSPLILKHQVKNDSSTL
Sbjct: 61 KSLSIQKGDRSPLILKHQVKNDSSTL 86

BLAST of CmoCh03G001830 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.1e-19
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGD 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGD 60

Query: 61 GAKS--LSIQKGDRSPLILKHQVKNDSST 86
            KS  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 EPKSRLMISQKVDRSPLILKHQIKSTSSS 82

BLAST of CmoCh03G001830 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.5e-18
Identity = 62/88 (70.45%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEED-DHGDG 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK  +RGN+ EED DHGD 
Sbjct: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDE 60

Query: 61 AKS--LSIQKGDRSPLILKHQVKNDSST 86
           KS   S +  DRSPLILKHQ K+ SST
Sbjct: 61 RKSRLFSQKVADRSPLILKHQSKSTSST 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWJ22.5e-1970.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
A0A5A7V9D31.2e-1870.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC021.2e-1870.45Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6603410.11.6e-36100.00hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53975.15.1e-1970.79hypothetical protein Csa_018873 [Cucumis sativus][more]
ADN34001.12.5e-1870.45hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001830.1CmoCh03G001830.1mRNA