CmoCh03G001470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G001470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 2098609 .. 2101139 (-)
RNA-Seq Expression	CmoCh03G001470
Synteny	CmoCh03G001470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCAGAGGAGAAATCAATGGCGAAATTAGAAGAAGAAGAGAGAGTTAGTGAGGATCGTAAACGTATTGTTTTCCTTAATGGTTTATTCTGCAATGTTTGTGATAGGTAATCCCAACAAGAATCACTACAAGACGAACATCATGGGAGCAGAAATCAAGGCAAAGAACAAGCAAAGAGGGAAACCAGAACACGTTAATGAGGCCCAGGTGAGACAGAACATAATACAAAATTCTATATTTCATTGCAACTTACAAGTTTAATACTCAAATTTCTGATGATTGTGTGGCCCTATGCTTTATAAATTACTATACTTTGGACCCACCAATGCTTATCTGCTTTGCTTTGTTTAAAACGTCCAATATAGTACCTATGGTAAACCGTAAAATATACTTTAGAGTCCGCATTCTCAGATTTTGCCCTCTTCTTCCTCTCTTGCTCTGATTGTTACCACATCCACCCTTCTTTTACAGCCACCATCGAACCCTCTCTCTGTCTTTTGCCCTTTTCTCAGAATAGAGCGATCGCCTTGATTATGAAGCCTCTATCTTGAGTCTCTATAGCCTATAACTCATGGTTGTTTCTCCGATTCTACTCTCTATAGACCTCTTTTTGAATTTTTCAGTTCCAAGTTTCACATTGGTTCAAATCCAATGCTCAACTTGCGGGAGGTGTTAAAGATATTTAGCATTCCATTACGGTTTACTATAGATACCATATTTGATCTTTTATTAAAGGCAAATATCTAGATATTTATCTTCCATTACCGTTTACCATAAGTACCATATTTGATATTCTATTGTAGACCAATATCTTGTATCCATTTATACCTTTATAATTTATTTGATGATTATAAATAGAGAATTTCACCACCATTTAGGTGGGATGATTTTAGCAAATATTCCCAGTTTCAAGATTTAGAGTCTGTTTAGAATGACTTTATGCTCCTAAAGTCATTTTCAACGTGTCCTTAGATCTAAAAACAACATAGTTTGGACCATATTTACATCATAATCTAATCATCGAAGTTTAGGAGTTGAATTTGCAACGAGTTTAAACCTAGTTTTAAAAATGTTGGAGCCTAAAGTAGGATATAATCTAATCATATACCATTCAACTATATGAAATAAAAAGGTGGGAAAGTGAGGAAAATGGTTACCAATGTTAGGCAACACATATTATCTCCACTTTCTCTTCTTTTTGTAAGCTTTATATGCGGTGACAAACGAGTTATATTTTATCTTGGTAAGAAAGAATGGGAGAATAATGGAAGTGGGGTTGAGGTTTGGCTTGGATCCTTCTATTCCAGGCTGTCTTTGTTGGGTTATCACAAACACCAAGAAAGATAGAATATATATATATATATAAGTTCAATTTCTTGCTTGAGCTTTGCAACAAGATATATATAGTTTATTGAATGACCTTTTGTTTGTATATGAGCTTTTCAGACCTGCTGCCTCCTTTCTCTTTTTCTTTTGTGATTTCAAAAGCTCTTGTTCTTATGTCTTTGGTGGATTTGAATGTGAATGAGGTTCGTGAAATTGTTTGAATTTGTGGATATCATTACATCGTAGTCTTACCTAAATAATTTTAATTCAACTCATGAAACAATACCATGTTAGAGATTATGAGACTTTAGGAGCGTAGATTGAAAGTTGAAGCATCACTTTTTAGATGCCCTTTGATGACCATTTATGTGAGATTCCACCTTGGTTAGAAAGGAGAATAAAACATCCTTTATAAGGGTGTGAAAATCCCTTCCTAACAGATGTGTTTTAAAAACGTTGAGGGGAAACCCGAAATGGAAAGTTTAAAGAGGATAATATCTGCTAGCGTGGGCTTGGCTGTTACAAATGATATCACAACCAAATACTGGGCCCCAAAGGTGGTGAATTGTGAGACCCCACCTCGGTTGGAAAGGGAAACAAAACATTCTTTATAAGAGTGTGGAAACCTCTCCTTAGCTGACGCGTTTTAAAAACCTTGAGAGGAAGCCCAAAAAGGAAAGTCTAAAAAGGACAATATCTACGTGCGGTGGGCTTGAGCTGTTACAAAATGGTATCAAAGTCAGACACCAGGGGGAGTGTGCCAAAGGGGATGGATTGTGAGATCTCACATCGGTTGGAGAGAAAAACAAAACTATCTTTACAAGGGTGTGTAAACCTCTTCCTAGCAGACGCATTTTAAAAACTTTGAGGAGAAGTCAAAGAGAGAAATCTTAAGGAGGATAATATCGACTAGTGGTGAGCGTGAGTCGTTAAGTTTGAATTTTTTTCTTTTGGTTGTTATCTACCCTCTTATAAATATTTTCAAGATTTTGCTTCAAATTTTTAATAATTGTGGTCATTGCTGAAACATCATTTTTCTGATTGTCAGTAAAGTGAGATAACTGGAAGCATCAATTATTGATTCATATAAACATGAGTCATCCTAGTCCAAGGGACAAAAATGTAGAATTCTTTGGTTTTGCATCCAACTACCACATGGATTGTATAGACTTTGGTTTTTTAGACAAAGAGTGGATAA

mRNA sequence

ATGGCAATGGCAGAGGAGAAATCAATGGCGAAATTAGAAGAAGAAGAGAGAGTTAGTGAGGATCGTAAACGTAATCCCAACAAGAATCACTACAAGACGAACATCATGGGAGCAGAAATCAAGGCAAAGAACAAGCAAAGAGGGAAACCAGAACACGTTAATGAGGCCCAGACAAAGAGTGGATAA

Coding sequence (CDS)

ATGGCAATGGCAGAGGAGAAATCAATGGCGAAATTAGAAGAAGAAGAGAGAGTTAGTGAGGATCGTAAACGTAATCCCAACAAGAATCACTACAAGACGAACATCATGGGAGCAGAAATCAAGGCAAAGAACAAGCAAAGAGGGAAACCAGAACACGTTAATGAGGCCCAGACAAAGAGTGGATAA

Protein sequence

MAMAEEKSMAKLEEEERVSEDRKRNPNKNHYKTNIMGAEIKAKNKQRGKPEHVNEAQTKSG

Homology

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BLAST of CmoCh03G001470 vs. NCBI nr
Match: KAG6603302.1 (hypothetical protein SDJN03_03911, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 21 DRKRNPNKNHYKTNIMGAEIKAKNKQRGKPEHVNEAQ 58
          D + NPNKNHYKTNIMGAEIKAKNKQRGKPEHVNEAQ
Sbjct: 10 DLEGNPNKNHYKTNIMGAEIKAKNKQRGKPEHVNEAQ 46

The following BLAST results are available for this feature:

BLAST of CmoCh03G001470 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G001470 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G001470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603302.1	1.3e-08	91.89	hypothetical protein SDJN03_03911, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh03G001470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G001470.1	CmoCh03G001470.1	mRNA