CmoCh03G001410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G001410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CLAVATA3/ESR-RELATED 22
Location	Cmo_Chr03: 1953340 .. 1954276 (+)
RNA-Seq Expression	CmoCh03G001410
Synteny	CmoCh03G001410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAATAAGCCCTAACCTTATTTTTTATTCTTAAGAAATGAGATTGAAGAACGTTACTGAGCTTGTCAGCTTGTTTTTTCTTCTTCTTTTTCTTCTTCCCTCCACCGTCGTCGTCGATACCACCACCACTGCTGCCACCCCCGCCGCCGTTACCTCCGTTGTCCACCCCAGACCCCACCCCCACGATGGTGGCGCCGCCGTGTTTGCTTCTCAGAAGAGACGAGTCTACACCGGTCCAAATCCTCTTCATAACAGATAAGTAAGTGAAGAAGGGACAAAAAAACGCATTAAAATTTGTTCTTCTTCATATATTTTTTTAATTTCTTCCCCATTTTCCCTTTTTTTTTTTGAATTTTTGCTGAAAGTGAAATATTTTTCTTCATGATCTTTTTCTTGATTGTACTTTGTTGGAATGTTGAAGTTATAATCTTCCATATATATATGTAAATGAGATTTTGTTGATGAAAAACTATTTAAAATATTGTATGTTTGTAATTAACAAGATTGAAATCAATGAATATTTTCATTAGGCTTTCTTAATTCTTTGATTTTTCTATTTTCAGCTTATGAAATTTGATTGCACGCACAATTTAGGACGTAGGATCTCACAATTCATCGGGTAGGGGCCAGCGTCCTCGCTCTCATATCGCTCAGTGTCTGGTTCTAATACCATTTGTCTGTTTTGGCTCCTTACGTATCATCATCGACCTCACGGTTTTAAAACGTGTTTCTTGAGGAGAAATTTTCACACCGAATTTCCATAAGCTTGAATTTTGAATGTTCTTGAATCTGATTTTTTTTTTCTTTCTTTTTGAAATCTAAAAAAGCTATTCCCATCCATTTTAATTTCTTTGTAAAGAATGATTATCAAAGGACCCACTTCTTGTATCATATAATTTTCTCCCACTCTCATCCACCTTCCACCATGTCATGTCC

mRNA sequence

AAACAATAAGCCCTAACCTTATTTTTTATTCTTAAGAAATGAGATTGAAGAACGTTACTGAGCTTGTCAGCTTGTTTTTTCTTCTTCTTTTTCTTCTTCCCTCCACCGTCGTCGTCGATACCACCACCACTGCTGCCACCCCCGCCGCCGTTACCTCCGTTGTCCACCCCAGACCCCACCCCCACGATGGTGGCGCCGCCGTGTTTGCTTCTCAGAAGAGACGAGTCTACACCGGTCCAAATCCTCTTCATAACAGATAACTTATGAAATTTGATTGCACGCACAATTTAGGACGTAGGATCTCACAATTCATCGGGTAGGGGCCAGCGTCCTCGCTCTCATATCGCTCAGTGTCTGGTTCTAATACCATTTGTCTGTTTTGGCTCCTTACGTATCATCATCGACCTCACGGTTTTAAAACGTGTTTCTTGAGGAGAAATTTTCACACCGAATTTCCATAAGCTTGAATTTTGAATGTTCTTGAATCTGATTTTTTTTTTCTTTCTTTTTGAAATCTAAAAAAGCTATTCCCATCCATTTTAATTTCTTTGTAAAGAATGATTATCAAAGGACCCACTTCTTGTATCATATAATTTTCTCCCACTCTCATCCACCTTCCACCATGTCATGTCC

Coding sequence (CDS)

ATGAGATTGAAGAACGTTACTGAGCTTGTCAGCTTGTTTTTTCTTCTTCTTTTTCTTCTTCCCTCCACCGTCGTCGTCGATACCACCACCACTGCTGCCACCCCCGCCGCCGTTACCTCCGTTGTCCACCCCAGACCCCACCCCCACGATGGTGGCGCCGCCGTGTTTGCTTCTCAGAAGAGACGAGTCTACACCGGTCCAAATCCTCTTCATAACAGATAA

Protein sequence

MRLKNVTELVSLFFLLLFLLPSTVVVDTTTTAATPAAVTSVVHPRPHPHDGGAAVFASQKRRVYTGPNPLHNR

Homology

[Close]

BLAST of CmoCh03G001410 vs. ExPASy TrEMBL
Match: A0A5A7SJL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001680 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MRLKNVTELVSLFFLL-LFLLP---------STVVVDTTTTAATPAAVTSVVHPRPHPHD 60
          M+LKN++EL+SLFFLL LFLLP         S +  D    +  P   T V  P+ H HD
Sbjct: 1  MKLKNISELISLFFLLILFLLPFNIERIIPTSAIAADVDADSNVPTTAT-VFRPKDHHHD 60

Query: 61 GGAAVFASQKRRVYTGPNPLHNR 74
          G AAVF +QKRRVYTGPNPLHNR
Sbjct: 61 GHAAVFGAQKRRVYTGPNPLHNR 82

[Close]

BLAST of CmoCh03G001410 vs. NCBI nr
Match: KAG6595427.1 (hypothetical protein SDJN03_11980, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 3.5e-13
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MRLKNVTELVSLFFLL---LFLLPSTVVVD-TTTTAATPAAVTSVVHPR----PHPHDGG 60
          MRLKN+TEL++LFFLL   LFLLP +   +  T+T A  AA T++V P+    P  HDGG
Sbjct: 1  MRLKNITELLTLFFLLLLFLFLLPFSFQTEIPTSTVAAAAAATAIVRPKRHHSPKSHDGG 60

Query: 61 AAVFASQKRRVYTGPNPLHNR 74
          AAVF +QKRRVYTGPNPLHNR
Sbjct: 61 AAVFEAQKRRVYTGPNPLHNR 81

[Close]

BLAST of CmoCh03G001410 vs. NCBI nr
Match: KAA0025884.1 (hypothetical protein E6C27_scaffold34G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-11
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MRLKNVTELVSLFFLL-LFLLP---------STVVVDTTTTAATPAAVTSVVHPRPHPHD 60
          M+LKN++EL+SLFFLL LFLLP         S +  D    +  P   T V  P+ H HD
Sbjct: 1  MKLKNISELISLFFLLILFLLPFNIERIIPTSAIAADVDADSNVPTTAT-VFRPKDHHHD 60

Query: 61 GGAAVFASQKRRVYTGPNPLHNR 74
          G AAVF +QKRRVYTGPNPLHNR
Sbjct: 61 GHAAVFGAQKRRVYTGPNPLHNR 82

[Close]

BLAST of CmoCh03G001410 vs. TAIR 10
Match: AT5G12235.1 (CLAVATA3/ESR-RELATED 22 )

HSP 1 Score: 40.4 bits (93), Expect = 7.1e-04
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 0


Query: 51  GGAAVFASQKRRVYTGPNPLHNR 74
           GG  VF   KRRV+TGPNPLHNR
Sbjct: 81  GGEDVFEDGKRRVFTGPNPLHNR 103

The following BLAST results are available for this feature:

BLAST of CmoCh03G001410 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G001410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJL7	2.7e-11	55.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmoCh03G001410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595427.1	3.5e-13	61.73	hypothetical protein SDJN03_11980, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025884.1	5.6e-11	55.42	hypothetical protein E6C27_scaffold34G001680 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh03G001410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12235.1	7.1e-04	73.91	CLAVATA3/ESR-RELATED 22	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G001410.1	CmoCh03G001410.1	mRNA