CmoCh03G001280 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 1749125 .. 1749739 (-)
RNA-Seq ExpressionCmoCh03G001280
SyntenyCmoCh03G001280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACCCAAAAATGATTATTTTCTTTCCGCGTCTAGAACGGCGGCTAGGAGTGGCTGAATGCCATTTGCCGACGAGAACAGTGTTTGGTGGGGGGCACAGCGGTTTTAAATCTCCCAGAATCTCTAAAATCTCCATTCCATTCGACGCCAATTCCAAGAAAGGAGACGGACAGAAGAGCCTTAGGTTTGTGTTCTCTCTGTTTTTCTTCCGCCGTTTGTGCTGCTTTAGCACCATTATCATTGATTTAGGTTTTAATTTTGTGAGGTTTGATTCTTTTTCTTGTTCAATCTTTTGAAATTGAATTTGTTCGATAATTTTGCTGAAACAACTTGATGTTCTGATCAGTACTGATTTTGTTCGATAATTTTGCTGTTGGCTCGGTTTGATTTTCGCTCCCTCGGAGAATCAGATCCGCGAACTAGTGTGGATTCCTTATTATCTCTCTCTCTCTTTTTTGTTCTCTTTTGTTGACTTTAACGGAATAGTTTTACATTGATTTGTTTCTCTTTTACATTCTTTTTTTCCTCTCATATGTTCTTTCTGTTTTGGATTAAGCTGTTAGATATTCTGCTGTTAGTGAAGTAAAAGATTCCGCCAAGACTGCCTTTAGTTGA

mRNA sequence

CAAACCCAAAAATGATTATTTTCTTTCCGCGTCTAGAACGGCGGCTAGGAGTGGCTGAATGCCATTTGCCGACGAGAACAGTGTTTGGTGGGGGGCACAGCGGTTTTAAATCTCCCAGAATCTCTAAAATCTCCATTCCATTCGACGCCAATTCCAAGAAAGGAGACGGACAGAAGAGCCTTAGATATTCTGCTGTTAGTGAAGTAAAAGATTCCGCCAAGACTGCCTTTAGTTGA

Coding sequence (CDS)

ATGATTATTTTCTTTCCGCGTCTAGAACGGCGGCTAGGAGTGGCTGAATGCCATTTGCCGACGAGAACAGTGTTTGGTGGGGGGCACAGCGGTTTTAAATCTCCCAGAATCTCTAAAATCTCCATTCCATTCGACGCCAATTCCAAGAAAGGAGACGGACAGAAGAGCCTTAGATATTCTGCTGTTAGTGAAGTAAAAGATTCCGCCAAGACTGCCTTTAGTTGA

Protein sequence

MIIFFPRLERRLGVAECHLPTRTVFGGGHSGFKSPRISKISIPFDANSKKGDGQKSLRYSAVSEVKDSAKTAFS
Homology
[Close]
BLAST of CmoCh03G001280 vs. NCBI nr
Match: KAG7033568.1 (hypothetical protein SDJN02_03290, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.1e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MIIFFPRLERRLGVAECHLPTRTVFGGGHSGFKSPRISKISIPFDANSKKGDGQKSLRYS 60
          MIIFFPRLERRLGVAECHLPTRTVFGGGHSGFKSPRISKISIPFDANSKKGDGQKSLRYS
Sbjct: 1  MIIFFPRLERRLGVAECHLPTRTVFGGGHSGFKSPRISKISIPFDANSKKGDGQKSLRYS 60

Query: 61 AVSEVKDSAKTAFS 75
          AVSEVKDSAKTAFS
Sbjct: 61 AVSEVKDSAKTAFS 74

[Close]
BLAST of CmoCh03G001280 vs. NCBI nr
Match: KAG6603279.1 (hypothetical protein SDJN03_03888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1  MIIFFPRLERRLGVAECHLPTRTVFGGGHSGFKSPRISKISIPFDANSKKGDGQKSL 58
          MIIFFPRLERRLGVAECHLPTR VFGGGHSGFKSPRISKISIPFDANSKKGDGQKSL
Sbjct: 1  MIIFFPRLERRLGVAECHLPTRKVFGGGHSGFKSPRISKISIPFDANSKKGDGQKSL 57

The following BLAST results are available for this feature:
BLAST of CmoCh03G001280 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001280 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033568.19.1e-33100.00hypothetical protein SDJN02_03290, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6603279.13.8e-2398.25hypothetical protein SDJN03_03888, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh03G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001280.1CmoCh03G001280.1mRNA