CmoCh03G000840 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G000840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NADH:ubiquinone oxidoreductase, ESSS subunit
Location	Cmo_Chr03: 1279739 .. 1280065 (+)
RNA-Seq Expression	CmoCh03G000840
Synteny	CmoCh03G000840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGGCACCGCCTTCTCTCTTCTCTCCGGACCCGCGGTGGAGCCGCCGCCGGTCAGAGTCGGTGGACCAGTCCTGGCCATGAGGATCGGCCGAAGGGCTATCTTTTCAATCGGACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTCGAGATGGAGAACCTAGGTATCTCTGGCTCTGTATCATCTGAATCTGATTGA

mRNA sequence

ATGCTCCGGCACCGCCTTCTCTCTTCTCTCCGGACCCGCGGTGGAGCCGCCGCCGGTCAGAGTCGGTGGACCAGTCCTGGCCATGAGGATCGGCCGAAGGGCTATCTTTTCAATCGGACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTCGAGATGGAGAACCTAGGTATCTCTGGCTCTGTATCATCTGAATCTGATTGA

Coding sequence (CDS)

ATGCTCCGGCACCGCCTTCTCTCTTCTCTCCGGACCCGCGGTGGAGCCGCCGCCGGTCAGAGTCGGTGGACCAGTCCTGGCCATGAGGATCGGCCGAAGGGCTATCTTTTCAATCGGACGCCGCCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTCGAGATGGAGAACCTAGGTATCTCTGGCTCTGTATCATCTGAATCTGATTGA

Protein sequence

MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD

Homology

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BLAST of CmoCh03G000840 vs. ExPASy TrEMBL
Match: A0A6J1EKL9 (uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC111435525 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.4e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

[Close]

BLAST of CmoCh03G000840 vs. ExPASy TrEMBL
Match: A0A5D3BP74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00110 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.3e-53
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CmoCh03G000840 vs. ExPASy TrEMBL
Match: A0A6J1DCT8 (uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019565 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.5e-53
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL +LRTRGGAAAGQSRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+GIS S SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of CmoCh03G000840 vs. ExPASy TrEMBL
Match: A0A6J1HPH2 (uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL SLRTRGGAA GQSRWTSPGHE++PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENL ISGS SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of CmoCh03G000840 vs. ExPASy TrEMBL
Match: A0A5A7VJ63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00220 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+ PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CmoCh03G000840 vs. NCBI nr
Match: XP_022928682.1 (uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 uncharacterized protein LOC111803776 [Cucurbita pepo subsp. pepo] >KAG6603240.1 hypothetical protein SDJN03_03849, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033542.1 hypothetical protein SDJN02_03264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

[Close]

BLAST of CmoCh03G000840 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 1.8e-53
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL SLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LG+SGS SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

[Close]

BLAST of CmoCh03G000840 vs. NCBI nr
Match: TYK00850.1 (uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 216.9 bits (551), Expect = 8.8e-53
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CmoCh03G000840 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 215.7 bits (548), Expect = 2.0e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL +LRTRGGAAAGQSRWTSPGHE+RPKGYLFNRTPPPPGQSRKWEDWELPCY+T
Sbjct: 13  MLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYIT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEN+GIS S SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of CmoCh03G000840 vs. NCBI nr
Match: XP_022966491.1 (uncharacterized protein LOC111466129 [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-52
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60
           MLRHRLL SLRTRGGAA GQSRWTSPGHE++PKGYLFNRTPPPPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENL ISGS SSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of CmoCh03G000840 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-41
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 2   LRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVTS 61
           LR+R+ S     G  +AG SRW +PGHE+RPKGY  NRTPP PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFS---RSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEME L  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of CmoCh03G000840 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-41
Identity = 73/91 (80.22%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 14  GGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHE+RPKGY  NRTPPPPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMENLGISGSVS 105
           AKPDL+IETWAHQKALERLEME L  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:

BLAST of CmoCh03G000840 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G000840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKL9	5.4e-56	100.00	uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]
A0A5D3BP74	4.3e-53	95.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DCT8	9.5e-53	93.52	uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1HPH2	1.6e-52	94.44	uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129...	[more]
A0A5A7VJ63	1.6e-52	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CmoCh03G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928682.1	1.1e-55	100.00	uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 unchar...	[more]
XP_038881129.1	1.8e-53	96.30	uncharacterized protein LOC120072731 [Benincasa hispida]	[more]
TYK00850.1	8.8e-53	95.37	uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa]	[more]
XP_022151653.1	2.0e-52	93.52	uncharacterized protein LOC111019565 [Momordica charantia]	[more]
XP_022966491.1	3.4e-52	94.44	uncharacterized protein LOC111466129 [Cucurbita maxima]	[more]

BLAST of CmoCh03G000840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42310.1	2.2e-41	74.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57785.1	2.8e-41	80.22	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	PANTHER	PTHR40637	ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN	coord: 3..98
None	No IPR available	PANTHER	PTHR40637:SF3	BNAA03G19790D PROTEIN	coord: 3..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G000840.1	CmoCh03G000840.1	mRNA