CmoCh02G018600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G018600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	exosome complex component RRP4 homolog
Location	Cmo_Chr02: 10492044 .. 10495991 (+)
RNA-Seq Expression	CmoCh02G018600
Synteny	CmoCh02G018600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAACTCATTTATTTTCTTCTCCCTCTCTTTTTTTTCCTATGAACCCTAGATTTACGCTGTCGCTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCAACCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTCCACTGCCGCCTTCCTTACGTTCAACTTCGCTGATTCCCCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCATTTTGTATTTTTTCGTTTGCAGATCGCCTCGTTCCAGGGTCACTGCCGTCGTTGCATAGACGGCACCTGGTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGGTTTGCTCGTCCACCTCTTTTCCTTTTATTCATTTTTTCCTCTATCTTCAGCAACCGGCGGCAACCTGTTGCCTCATTTGCACATTGTTCCATGTCCATAATTGATTGTTTTTTTGCACAGTCGTGACTCGAAGAAATGATTTTGTTGCGACGTTGCTAGTCCTTATTTGTGTAATTTTTTCATCACGTACCAAATTATTACCGGATATCTGTACAAATATTTTGTTCCAGTACGTCGATTTTGGTGATCAGCATCCTGCAGCACCCCTATTTTCTAATTTAGTAATTTTCTAAATGCAGATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCCAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTCACTATCTTTATACAATAGATATTTGGTTTGTGTACTTGCCTGGGGGTTATTGCATTGAGGTTTAATTGAAATGTGTATACAGGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGTTGTCCATGAATCTTTATAATTTGATTTTTCTTGATGATAGTTTAATGTTTCCCTTCTTTTGGTTTCTTGTTAGGGCGTCTTTTCTGATGCATTTGTCTGTATTGTTTATTAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTAAAACCAAATGCTTTTTATTAGGTTTAAGTTGGTGAGTAAAACTTATTGCTGAGTCATGGTTATGCTGTTCAAATCTGAAAAACGTGTTACAATGCAACCCCCCCAAATCTCTCCTATCTCATTCAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGGTACTGGAGAAATCCCTTTTTTTTTATGTACATAATGGTGTCTTGCACCAGACGATGAATTACTGCTGAATTTTGTAGATTACTCTACTGCAAACTTGCTGCAGTTTATCTTTTATAGAGTGATTGCGTTTGTGGATTATTGTTTGAACTTTGGTATATTCTTTTTTTTTTTTTTTCCTAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGTAAGTTTTTAGTTCCATTTTCACCTAGCACCATCAGAAAGAATACGTGCTACCAATTTTCTCATGTGACATACATCTAAGTGGGTTTGTTCCATGTTTTGAATATTTTGAAGCATTAAAATTTTATTAGTTTTTTTGGTTAGATAATTGTTTGATCCTAGGATATTTGATTGTTAAGAAACTTGTAGGATTTTAATATCATAGGAGAGTACCGTGGTACCATGGAGTTCGAACCATAACTTTAAGTTATACTGCCTTGACCTTTTGGCCAAAACACGATGGCCATGAATTTTTTTTATTTAACTCACAACGCCTTCGTAAAAGGTATGGAGCATAGGCTCCAGCACATTAGATTGATAGATGCATCTTTGGCACCTTGCTTGGTTTTGGGCCAGGTGTCTTAACTCAAGGGCCCTTTTGTGGCTTGTTGCTCTTCACTAAGGTCCCATTATTATTTTTTTGACAGTCTAATGTTGTAGGTTCTTAACTCAAGAGCCTTGTTGTGCCTCTTGCCCATAAGTGTCATTCTTTAATTTTCTCTACTTTTCTCGCCTATAATTAAACACCACTCTCATCATTGATTGTTTCACATGCTTCATTTTCCAGTCAAGAAAAAATAAAAAATAAATAACATCACCATAACTTTTCTCAGGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGGTGAAATGAGTCCTTTTTTTTAAGCTTCTGGATGTTGATGTAATAACAAAATAAGCTTTTGAAACAAATCTCCATACACATCTTCCCTAGTTTCTTAGGAGAGATTCTGTAAAAAGATTCTTGAAAGAATGTGAGTACTAATTTATAGAAGAACCTCCTGGGTAAATTCTAGTGATTAAAACAAATTGTAAAGATGGGTTTGTTTGTTGCCCAGGAATAAGGGAAAAAGGGCTGTGATTAATAATGTGAAAAGAGTGACGGGTAGAAATCATTGAGTGAATGTAAGAACCAGCTAGCAGATGTGCCGAGGTAAGACAAAATGTAAGAGATGGTAAAAGAAAAGTTATTGTGCGAATGCGAAAAAACCAATCCACCGCTAAGGCGTGAATAGCTATAATGCAAAATCTCGACACAGAAATTATGTTTACTTCTGATTGTTATATTTTCCTTTTATGCTTAAGCGTGATAAGTTCACAATCTTGGGAGGATTGTATTTGAATAAGATTTCTTCGTTGCAATGGTTATTATGTTCCTGACAACTTTTCTTAGTGACCGTTTTAAATATTGTTTTTCTTGATCAATAAGATTACTGCATTTGTATCCAGCTTGAAAGAGGTCAGCTGCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAGTAAGAAGGGATGATTTGGTTTTCAAAATTGTGTAATTCACTCTTGATGGAAATTTTGCTACGAACAACTTGATTTTCTGAGGATCTCACTATGAGATCTTAGTTTGTGGAATTTTATGATGCCGACGATTGGTCTGCTACTAGTGTTAACATTATAGAAAGCAATATTTGCTTAATTATTCTGTAGTAAGTGGTTTCATAAATTCACTAAACTTTATAAAATGTAGTATTTTCGCGGATGATATTTTTATTTGCCTACTCATTTGTATTACCGTAAAGGAATCGTTCATTCTGCGGTGTCTGTGACCAACCCAATGTAAGCTCTGTGGAAGTTGATCAATTCTCTAAGATACCAGGCAATGGAACAACGTCCGAGCAGACCACTTTCTTATTTCACAACTTTAACAATTTTCCAATGTTAATTAAATAGATGGAAAAGGAAATGCGGAGTTTAGTCCGGAAGCACTGAGCAAAGCAAGATGCGGAAGTAGTGCTAATGACAGAAATTTTCAAAAGACTATCCATTAA

mRNA sequence

CAAAAACTCATTTATTTTCTTCTCCCTCTCTTTTTTTTCCTATGAACCCTAGATTTACGCTGTCGCTCTGCTAAGAAGCCGCCGTCCACGTCCATCGTCGCCGTCGCACCACTTTGTCAAGACCCACCGTGTTTCAACCCCCTCCCCGTTCTCTTCGACGGAATCCTAGATCTCCACTGCCGCCTTCCTTACGTTCAACTTCGCTGATTCCCCACGTTCTCCATTTCTTTCCCTCTCTCCTCTGCAACCATTGACGCTGTTTGCCGTCCGCATTTTGTATTTTTTCGTTTGCAGATCGCCTCGTTCCAGGGTCACTGCCGTCGTTGCATAGACGGCACCTGGTTGGCCTGTTGTACCTTTCGCCGTCGCACCTGTCGTGACTCGAAGAAATGATTTTGTTGCGACGTTGCTAGTCCTTATTTGTATATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCCAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGCTTGAAAGAGGTCAGCTGCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAATGGAAAAGGAAATGCGGAGTTTAGTCCGGAAGCACTGAGCAAAGCAAGATGCGGAAGTAGTGCTAATGACAGAAATTTTCAAAAGACTATCCATTAA

Coding sequence (CDS)

ATGAGAGGATTACAAGTTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAAACGCTCGAGTCTATCTCTTCGAAAGCCAATTCCGATGCTTCAGTTGTAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGAACCCTTGACTTGAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCAGAGGTTGGTGATATCATAGTGGGGCGTGTTACGGAGGTTGCTCCCAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCTATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTGGATGAACTCAACATGCGGACCATTTTTGAAGAAAATGATGTTATTTGCGCAGAAGTTCGTGGTTTCCAGCATGATGGCCTACACCTTCAAGCAAGAAGCCAGAAATATGGGAAGCTTGAAAGAGGTCAGCTGCTCACAGTTTCACCGTATCTAGTAAAGAGACGCAAACAGCACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCTACAGAGGATATGATGGTAGAAGATCCAATTAATAAATCTGAACAGAAGGGTTCAAAATTTGAAGGAAGTTTTGGTAACCAAGTGCAAGAAAGAATATATACTCCATTGGAGACACGTCAGAATATATGCAGAACTGCAAACGCCATTCGAGTATTGTCTATCTTAGGTTTCATAATGTCAGTAGAAGTCATAATGGAGACAGTAAGTCTAAGTATTTCTCTGAACATCGATGTGCATGAAATGCTTGGGTCGGAGTTCTGTGTTCTCACTGCAGAAAAAGAGGCTGAGCGGCGGACTTCGAATGGAAAAGGAAATGCGGAGTTTAGTCCGGAAGCACTGAGCAAAGCAAGATGCGGAAGTAGTGCTAATGACAGAAATTTTCAAAAGACTATCCATTAA

Protein sequence

MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGSKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDVHEMLGSEFCVLTAEKEAERRTSNGKGNAEFSPEALSKARCGSSANDRNFQKTIH

Homology

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BLAST of CmoCh02G018600 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 3.7e-119
Identity = 217/326 (66.56%), Postives = 268/326 (82.21%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+      V DP+   +QK 
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE------VRDPMAIDDQKD 242

Query: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
            +   S  +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVIMETV+LS S NID
Sbjct: 243 EEMISS-SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSNGK 326
           +H+MLGSEF V+ AE EAERR +  K
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRK 321

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BLAST of CmoCh02G018600 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-45
Identity = 110/257 (42.80%), Postives = 156/257 (60.70%), Query Frame = 0


Query: 51  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLD 110
           ++GHGT   +G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MR+ F+E D++ AEV+ +  DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVE 230
           S KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H    E+    
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSS 250

Query: 231 DPINKSEQKGSKFEGSFGNQVQE-RIYTPLE-TRQNICRTANAIRVL-----SILGFIMS 290
             I + E++ S  E  + N+  E   YT L  +R +IC    A R L     SI  F  S
Sbjct: 251 VSITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYES 310

Query: 291 VEVIMETVSLSISLNID 300
             V      L++  N+D
Sbjct: 311 SLVFSNLQDLTVPKNMD 321

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BLAST of CmoCh02G018600 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-45
Identity = 107/213 (50.23%), Postives = 139/213 (65.26%), Query Frame = 0


Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

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BLAST of CmoCh02G018600 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-45
Identity = 105/214 (49.07%), Postives = 138/214 (64.49%), Query Frame = 0


Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     + +    VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTED 226
           +K HFH L   G  +ILG NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

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BLAST of CmoCh02G018600 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-44
Identity = 104/205 (50.73%), Postives = 134/205 (65.37%), Query Frame = 0


Query: 13  KIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     +      VV  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+    DG + L  RS KYGKL +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI 217
           +K HFH L   G  +ILG NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

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BLAST of CmoCh02G018600 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 2.2e-178
Identity = 324/326 (99.39%), Postives = 325/326 (99.69%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSNGKG 327
           HEMLGSEFCVLTAEKEAERRTS+ KG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKG 326

[Close]

BLAST of CmoCh02G018600 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 9.1e-177
Identity = 322/325 (99.08%), Postives = 323/325 (99.38%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSNGK 326
           HEMLGSEFCVLTAEKEAERRTS+ K
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of CmoCh02G018600 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 3.7e-170
Identity = 306/325 (94.15%), Postives = 318/325 (97.85%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS SLNI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSNGK 326
           HEMLGSEFCVLTAEKEAERRTS+ K
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of CmoCh02G018600 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 9.4e-166
Identity = 299/325 (92.00%), Postives = 316/325 (97.23%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+SLNQTQ+IRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRR+TA DELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGK+ERGQ
Sbjct: 121 LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFI IGE VDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS+SLNI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSNGK 326
           HEMLGSEFCVLTAEKEAERRTS+ K
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of CmoCh02G018600 vs. ExPASy TrEMBL
Match: A0A6J1DNK7 (exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 3.5e-160
Identity = 287/326 (88.04%), Postives = 308/326 (94.48%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLNQTQKIRLQ ALE+LESIS KANSDASV+VADTIP+NYEDG+LKGHGT DL+
Sbjct: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVAT+CGVVERVNKLIYVRALRARYKPEVGDI+VGRV EVAPKRWRLDINYSQ AVLM
Sbjct: 61  GEVVATVCGVVERVNKLIYVRALRARYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +NK EQKG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGP 240

Query: 241 KFEGSFGN-QVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
           K EG+FGN + QER+YTPLETR+NICR ANA+RVLS LGFI++VEVIMETV+LS+SLNID
Sbjct: 241 KSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNID 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSNGK 326
           VHEMLGSEFCVL AE E ERRTS+ K
Sbjct: 301 VHEMLGSEFCVLVAENEVERRTSSKK 326

[Close]

BLAST of CmoCh02G018600 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 429.5 bits (1103), Expect = 2.6e-120
Identity = 217/326 (66.56%), Postives = 268/326 (82.21%), Query Frame = 0


Query: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+QTQK+R +RA+E L+S+SS ANSDASV+V D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR IF E+DV+CAEVR FQHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+      V DP+   +QK 
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVE------VRDPMAIDDQKD 242

Query: 241 SKFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNID 300
            +   S  +  +E+ + PLETRQ ICR  NAIRVLS LGF +++EVIMETV+LS S NID
Sbjct: 243 EEMISS-SSTGKEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSNGK 326
           +H+MLGSEF V+ AE EAERR +  K
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRK 321

The following BLAST results are available for this feature:

BLAST of CmoCh02G018600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	3.7e-119	66.56	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q09704	1.2e-45	42.80	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q8VBV3	1.6e-45	50.23	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q2KID0	4.6e-45	49.07	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q13868	3.0e-44	50.73	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of CmoCh02G018600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXY1	2.2e-178	99.39	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1K7S0	9.1e-177	99.08	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1HGD9	3.7e-170	94.15	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HVC7	9.4e-166	92.00	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1DNK7	3.5e-160	88.04	exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673...	[more]

BLAST of CmoCh02G018600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	2.6e-120	66.56	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..169 e-value: 1.3E-4 score: 31.3
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 179..219 e-value: 2.5E-12 score: 47.1
None	No IPR available	GENE3D	2.40.50.140		coord: 88..177 e-value: 1.3E-18 score: 68.7
None	No IPR available	GENE3D	2.40.50.100		coord: 36..87 e-value: 3.3E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..354
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 10..322
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 86..176 e-value: 3.16108E-34 score: 119.191
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 44..82
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 10..322
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 179..322
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 85..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G018600.1	CmoCh02G018600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding