CmoCh02G018590 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G018590
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 10490351 .. 10491167 (+)
RNA-Seq ExpressionCmoCh02G018590
SyntenyCmoCh02G018590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGAAATGGTCGCCCGGTTTGTGGCCAGATTCTCTTCTCAACCTTTTTCTAATTTCTTCGGAATCAGTACTGATTTGGATGCTTTCAAAGTTCTGAAAACAGCTATTAAGTTGCATTAATTGGACTATCTCCGAAGAAAATTTGGCAGAAACCAAAGCTTGGAATATGATTCTCCTCTCTGAATGTCATATCAATTGGAAAACACTCACAAAAAGCACCCTCTTTTAGATTTCTTGAACTCTGTAATAATTAATCAAGTTTCAAACTAGGTAGGATCCACGAAGCATCCCTGTGGTATCTTTTAATAATCAAGTTCCGTTCTCACTTAATATAAATAGAATACCAGGCGTGTTTCTTCCCCAATACCAACACCCACCACACTGTCAATCCCAATCATAGTCTCGTAACACCACATCAGTACGCAATGGGAAGGAACTCCAAATCCTCCAAGCGCAACCCCGTGTGCGAGAAGCTTCTCAAGGCTCTTGGCTTGTATCCTAGAATCCTCAAATTTGGCCCTCCGCCAAACCGCCAGGAAGAACCCAAACCGGCTGCCCTGGCTCACTCATATTCTCTGCAAATTCAGGATGATGAAGTTGAGAAAGAACAAAAGCCCAGCGAAGATGTAAACGACGTGTTTAGCGATTACATCAGTCGGGCTAAACGTAGGCTGGGAAGCATATCAAGCAAGCGACATGATTGGAGTAGCAGAGGAAAGGAGAACGTCAAAGAAGATAATCGCTTTTCGGACTATATCGTTCGAGCTAGGAATAAGCTGAAGGCTACGTCCTCAAGTGTAAAGCGAGAATAG

mRNA sequence

ATGGAATGGAAATGGTCGCCCGAATACCAGGCGTGTTTCTTCCCCAATACCAACACCCACCACACTGTCAATCCCAATCATAGTCTCGTAACACCACATCAGTACGCAATGGGAAGGAACTCCAAATCCTCCAAGCGCAACCCCGTGTGCGAGAAGCTTCTCAAGGCTCTTGGCTTGTATCCTAGAATCCTCAAATTTGGCCCTCCGCCAAACCGCCAGGAAGAACCCAAACCGGCTGCCCTGGCTCACTCATATTCTCTGCAAATTCAGGATGATGAAGTTGAGAAAGAACAAAAGCCCAGCGAAGATGTAAACGACGTGTTTAGCGATTACATCAGTCGGGCTAAACGTAGGCTGGGAAGCATATCAAGCAAGCGACATGATTGGAGTAGCAGAGGAAAGGAGAACGTCAAAGAAGATAATCGCTTTTCGGACTATATCGTTCGAGCTAGGAATAAGCTGAAGGCTACGTCCTCAAGTGTAAAGCGAGAATAG

Coding sequence (CDS)

ATGGAATGGAAATGGTCGCCCGAATACCAGGCGTGTTTCTTCCCCAATACCAACACCCACCACACTGTCAATCCCAATCATAGTCTCGTAACACCACATCAGTACGCAATGGGAAGGAACTCCAAATCCTCCAAGCGCAACCCCGTGTGCGAGAAGCTTCTCAAGGCTCTTGGCTTGTATCCTAGAATCCTCAAATTTGGCCCTCCGCCAAACCGCCAGGAAGAACCCAAACCGGCTGCCCTGGCTCACTCATATTCTCTGCAAATTCAGGATGATGAAGTTGAGAAAGAACAAAAGCCCAGCGAAGATGTAAACGACGTGTTTAGCGATTACATCAGTCGGGCTAAACGTAGGCTGGGAAGCATATCAAGCAAGCGACATGATTGGAGTAGCAGAGGAAAGGAGAACGTCAAAGAAGATAATCGCTTTTCGGACTATATCGTTCGAGCTAGGAATAAGCTGAAGGCTACGTCCTCAAGTGTAAAGCGAGAATAG

Protein sequence

MEWKWSPEYQACFFPNTNTHHTVNPNHSLVTPHQYAMGRNSKSSKRNPVCEKLLKALGLYPRILKFGPPPNRQEEPKPAALAHSYSLQIQDDEVEKEQKPSEDVNDVFSDYISRAKRRLGSISSKRHDWSSRGKENVKEDNRFSDYIVRARNKLKATSSSVKRE
Homology
BLAST of CmoCh02G018590 vs. ExPASy TrEMBL
Match: A0A5D3CQZ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00660 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 69/145 (47.59%), Postives = 85/145 (58.62%), Query Frame = 0

Query: 37  MGRNSKSSKRN-PVCEKLLKALGL--YPRILKFGPPPNRQEEPKPAALAHSYSLQIQDDE 96
           MGRN KSS  N P CEKLLKA G+   P+I K  P  +  E+        S  + +  + 
Sbjct: 1   MGRNPKSSTPNTPFCEKLLKAFGISHRPKINKLSPSTSHHEQQHQQQNNSSQHIYVHHEP 60

Query: 97  VEKEQK------------PSEDVNDVFSDYISRAKRRLGSISSKRH---DWSSRGKEN-- 156
              E K              + VNDVFS+YI+RAKRRLG+I+SK+H   D S +GKEN  
Sbjct: 61  AIMEIKTHSSKSNKYGGGDEDSVNDVFSNYINRAKRRLGNIASKKHSNNDSSGKGKENSL 120

Query: 157 VKEDNRFSDYIVRARNKLKATSSSV 162
             ED RFSDYI RAR+KL+ATSSSV
Sbjct: 121 KAEDRRFSDYIARARDKLRATSSSV 145

BLAST of CmoCh02G018590 vs. ExPASy TrEMBL
Match: A0A0A0KG94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.2e-15
Identity = 67/144 (46.53%), Postives = 82/144 (56.94%), Query Frame = 0

Query: 37  MGRNSKSSKRN-PVCEKLLKALGL--YPRILKFGPP--------PNRQEEPKPAALAHSY 96
           MG+NSKSS  N P CEKLLKA G+   P+I K              +Q         H  
Sbjct: 1   MGKNSKSSTPNTPFCEKLLKAFGMSHRPKINKLSSSISHHEHHHHQQQRNSSQHIYVHHE 60

Query: 97  SLQIQDDEVEKEQK----PSEDVNDVFSDYISRAKRRLGSISSKRH--DWSSRGKEN--V 156
              ++     K  K      + VN  FS+YI+RAKRRL +++SK+H  D SSRGKEN   
Sbjct: 61  PAVMEKTHSSKNNKYAGGDEDSVNAAFSNYINRAKRRLENMASKKHSNDSSSRGKENNLK 120

Query: 157 KEDNRFSDYIVRARNKLKATSSSV 162
            ED RFSDYIVRARNKL++TSSSV
Sbjct: 121 AEDRRFSDYIVRARNKLRSTSSSV 144

BLAST of CmoCh02G018590 vs. ExPASy TrEMBL
Match: A0A314UC87 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31712 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.3e-04
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 0

Query: 20  HHTVNPNH--SLVTPHQYAMGRNSKSSKRNPVCEKLLKALGLYPRI-LKFGPPPNRQEEP 79
           H   +P H   L+T  Q A    ++  K+ P   +       Y +   +    P   E P
Sbjct: 117 HDQGSPKHKAELLTQPQKATYPKAEEEKQKPKYSEAQPHKANYSKAEEQEKQKPKHSESP 176

Query: 80  KPAALA---HSYSLQIQDDEVEKE-QKPSE-DVNDVFSDYISRAKRRLGSISS---KRHD 139
              A+    H+++  ++  +V+ E +KP E D+ND FS+YI++AK ++ ++SS      D
Sbjct: 177 LKGAVGEALHNHNAAVKAPQVKNEGKKPGELDINDTFSEYINQAKIKIRTMSSNNISESD 236

Query: 140 WSSRGKENVKEDNRFSDYIVRARNKLKATSSSV 162
             ++ KE+VK+   FSDYI RA+NK K+T S++
Sbjct: 237 DDAKKKESVKD--HFSDYIHRAKNKFKSTPSNL 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQZ72.0e-1747.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KG949.2e-1546.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409360 PE=4 SV=1[more]
A0A314UC874.3e-0431.37Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_317... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..142
NoneNo IPR availablePANTHERPTHR36746:SF3BNAC04G51760D PROTEINcoord: 82..163
NoneNo IPR availablePANTHERPTHR36746BNAC04G51760D PROTEINcoord: 82..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G018590.1CmoCh02G018590.1mRNA