CmoCh02G018570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G018570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA exonuclease 4
Location	Cmo_Chr02: 10481547 .. 10486272 (-)
RNA-Seq Expression	CmoCh02G018570
Synteny	CmoCh02G018570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGATTAGAAATTCATTTTTATGTTTCTTTCTGAAATAAATGGACCTTTTCCCTTCCATTTTCCCCCTCCCCAATCTCAGAGCCTCGGCACCCCGTTCCCCCGTCAGCCACCCAAAGCACCCGTCGCTGCTGGCCTTCCTTTCCCCCCCACCATTTCCCTCCTACTTTCTCTTATTTGAAAACTTTCAGATCTGTAAAAAGTTTAGAATATTGAGCTCTCGGCAAGCGGCGGACGTGAGAAAGTGCTATTTGATCTATTTTTTCCCTTTTTACATTTAATTTAAAATTAATCAGATATTTATTTTTTCGAAATTTTAATAACTAACTAAAATCTTACAAAATTCTTCCCACCCCTTGTAATTTTCAACCTGGGTGTTTTTGCTCGTTTAAAACTTCCTCTCTTGTTCGTATTTCTTTCCTTCAATCCATACAGAGTCTCCATTGCAGTAGGGTTTTCGAAAAAGCTTGTGAGAATGTGGGCCTGGGGCGGGAAACAACTCTTCCACTGCGTCTTCTAGCCAAACTATCACCACTAGCAGCTCTGCAGCGATCACGAACGATCTATTCAGGTGCGCTTCCACCAGTTTAATAATCCTTTGTCAAATTCGCTGGAGAGAGATTTATTTTCGATTTTTCTCGTAGTTCTTCTCTCAGCCATCCTTCGCTTTTCTATCGTCTGAAGTTTGATCATTAATTCTTTTAAGATTTACTTTACATTCTTGCAAAAAAAATAGCAACGTATTTAGTTATATTCCAAGTATTTTGTAATTTGTACATCTCTTCTCTTATCTGCGAAATTTCCTTTTGTAGTCCAACCAAAGAGTTCATGATAAGGTGGAGCTCGGAAATGACGCATTCCCCCAAACATCTTTTCCTTTTTAGCAATATCACTCCCATAAACCAATAAGCAGACACGGTTCTTAGGAGAGGGTTTCACTTTGTTGTTGTAGTATCTCTACGGTATATAATATTGTTGACTGACCATTCATAATGAGACTGTACTGCTATTTTACCTGAATTGAATTTGATTGTCTTCTTATTAGAAAAGAAGAAACTATCATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGGTTGGCATCTTTTCATTTAACCCTCTGCAATTGTTTCCAATTTTTGTCTTATTGAGTACTTGACGTTGACGATGGAAATTATAGTGTATATTTGTTTACAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTGAGATATTTTGTGTATTTTTTGTGGTAATATATCATAACACCATCTTATTATAATCCAATCTCTTAGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGAGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGTCAGTCGCCTGTGCTCTATGCATCATATATGAAAATTAATAAAGTTACTGATAGTTCTCTTAAAAAAATAAGGTTACTGGTAGTATATATTTCTGGATCAATCTTGAAATTGAACCATTTATTATCAGTTTTTTTTTCTTAATGCGGAACCTACTTTCATGGAGAGAAATGAAAGAATATATACGTCCATACAAAACAAGAAAAAAAGAAAAAAAGAAGAAGAAAACAGCCCCAAAAAGGAGTCCAACACTAATTAAGAAAAGGACTCCGATCCAAAAGAGCAAGATCTAGTTGATATATATATATATATATATATATATATATATATATATATAAAGAGAAGCAAAGACCGATGCCCACAACGAGATATTAATGCTCAATATACCAAGCCTCACTTGCAGGTCTCATCAAGCCCCTAAAAAGCATTTGAACTTTTATTGAAAACGACCTCGATTAAGATTATTATTTATTAAAGTGCACAATATCTGAGCTTATGATATCATACATGCATTTCAAAATTTGATTGGGGTTCTGTTGTAGGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACATATACCAATCACGAATTACAGGTATTTGTCTGTGTCTTTGTCTTGCTCTTGAAGGAAAGTTTTAGCTTTTAGAAACCAGCCTGTTAGATGCTCATATCCTGGTAATGTTGTAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGATTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGTGAATTTTCTCTAACTTGGGTTGTAATTATGCGTAGATTAGTTTCACTTTTATTGAAAATGAGATGCATTCGAACTTTTAAGTGATCTGCATTTGATAACATGATTTTTTCTGGCAATAAATCCTGTCGTAGGGGGTTAATAATGTGTTTTTGCTCTGAATTTTACACGACATGCTTCTCTTTTTTTGTGCACATTATACTTGCACATTCACCTTTTGGCTGAAACATTTTCTGCAGGGACACTGCCAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTAATATTCTTTGGTTCATATTGATTTAAAGAATGATAGAGTAATTTTTCGTTTCTTTCCAACTGAAGCAAGTATTTTATAAATAAACAAACATAAAAACTTAATTATTCTCTACAAAATGGAGGACGAGGGAAGTAAGATATCACCCAGCCAAAAACCTAAACCCCAGGAGTATGTGAAAAGCGACCTCTATCAAAATTATTATTTATTGATACAAAAAGGGAAAAGTTATGTAAAACTCTAAACAAATTACTCCAAGTGGGTGTTAGTCCCAGACTGGTCTTTAAAGTTTTTTTTGTTCCTCTCAAGACTGATCTAAAAGCCAACTTAAAGCTCTTGTAAGCTTGTAGGATTCCTCCATGGTATTTTTGCTAGACTATAAACCCGCCATCCAGAGAGGATCTAAGCGAGCAGGAAGGAATTTCACAACACCAACGAAATTATTGCGATTGCACATACATTTTTTCATCAACTCTTTTATGTTTATTCTTAATGCTTATCATTGTGCTCTAATACCTCACGGTCTGTCCATATCTGTTACGCTAGGTATTAGGTTGGGCTTAAAGATTAAATGCGTTCTTTATTAAATCTTAGATTTGTTCTTAATGCTTATCATTGTGCTCTGGGACCTCACGGACTCTCCATATTTGTTACTATAGGTATTAGGCTTGTTCAATGCTTAAAAAGTAACTATACTTTTAAAATGCTTTGGAAGACGTGTTCTAGTGCCGGTAATCAAACCGAGCCTTAGATATCAATAAGAATGAAAAAACTGTATCCAACACATCATCCTAGAATGTTTCTAGTTGAATATGAATTCCTTATTATTTTTTAATAAACTCCGTAAGGGTCAAGAAAATGAACTTGAAACCGGCTAAGCTAAGGCTAAGAAGAGCCGCCAAAGGCCAGCTGGCCGTTTTCCGCTTCATTGCTAACTCATGAGCAAATCCAATGTTCTGCATCTTCCATATTGAAGAATCAAATTCATTTGGCCTTGTATAGTGTGGTATTTTACACATAAAATTTGATCATGTGGGTGGAAAATGAGAGAATGTTGTCTTGGTAGGTGGTAGCATGTTTTTCTCTTTAATCTTGTTTTTAGCTTGTGAAGGATGATCTGTGAGGGCCATGGTTTTGCAGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACTAGTTACGACACTGTTGATTGCTCCTCCCCTTGCTCAGTATGTTGCTCACAGTATTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATACACTTTATGAGCTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGACGAGTAATGCAGACTTAGGATCAGATCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGGGAAGGTTGACCTGCTCTTTTGTATCTAGCCTTTCAAGACTTGAAACGATTAAAATGCACCTGTTCTATCGTATATTGGCGTCTTGCCAATTTATGGTTGTGTTTTAGGTCTCTGTTGGTGTTTGTTTCTTGATACAGACGTGTGTCGGAATGGAACGGACTTTAGAGGCATCTTTAGAAGTGTTAAATCAAATATGAAAATGATTCAATATTATTTACACTTTTCTTCGGGGGGAAAATTTGATTCTGAGGTTGGCAAGGTCTCTTATGAAAATTTTCTCTACGAACTGGG

mRNA sequence

TATTGATTAGAAATTCATTTTTATGTTTCTTTCTGAAATAAATGGACCTTTTCCCTTCCATTTTCCCCCTCCCCAATCTCAGAGCCTCGGCACCCCGTTCCCCCGTCAGCCACCCAAAGCACCCGTCGCTGCTGGCCTTCCTTTCCCCCCCACCATTTCCCTCCTACTTTCTCTTATTTGAAAACTTTCAGATCTGTAAAAAGTTTAGAATATTGAGCTCTCGGCAAGCGGCGGACGTGAGAAAGTGCTATTTGATCTATTTTTTCCCTTTTTACATTTAATTTAAAATTAATCAGATATTTATTTTTTCGAAATTTTAATAACTAACTAAAATCTTACAAAATTCTTCCCACCCCTTGTAATTTTCAACCTGGGTGTTTTTGCTCGTTTAAAACTTCCTCTCTTGTTCGTATTTCTTTCCTTCAATCCATACAGAGTCTCCATTGCAGTAGGGTTTTCGAAAAAGCTTGTGAGAATGTGGGCCTGGGGCGGGAAACAACTCTTCCACTGCGTCTTCTAGCCAAACTATCACCACTAGCAGCTCTGCAGCGATCACGAACGATCTATTCAGTCCAACCAAAGAGTTCATGATAAGGTGGAGCTCGGAAATGACGCATTCCCCCAAACATCTTTTCCTTTTTAGCAATATCACTCCCATAAACCAATAAGCAGACACGGTTCTTAGGAGAGGGTTTCACTTTGTTGTTGTAGTATCTCTACGAAAAGAAGAAACTATCATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGAGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACATATACCAATCACGAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGATTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCCAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACTAGTTACGACACTGTTGATTGCTCCTCCCCTTGCTCAGTATGTTGCTCACAGTATTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATACACTTTATGAGCTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGACGAGTAATGCAGACTTAGGATCAGATCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGGGAAGGTTGACCTGCTCTTTTGTATCTAGCCTTTCAAGACTTGAAACGATTAAAATGCACCTGTTCTATCGTATATTGGCGTCTTGCCAATTTATGGTTGTGTTTTAGGTCTCTGTTGGTGTTTGTTTCTTGATACAGACGTGTGTCGGAATGGAACGGACTTTAGAGGCATCTTTAGAAGTGTTAAATCAAATATGAAAATGATTCAATATTATTTACACTTTTCTTCGGGGGGAAAATTTGATTCTGAGGTTGGCAAGGTCTCTTATGAAAATTTTCTCTACGAACTGGG

Coding sequence (CDS)

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGAGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACATATACCAATCACGAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGATTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCCAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACTAGTTACGACACTGTTGATTGCTCCTCCCCTTGCTCAGTATGTTGCTCACAGTATTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATACACTTTATGAGCTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGACGAGTAATGCAGACTTAG

Protein sequence

MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT

Homology

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BLAST of CmoCh02G018570 vs. ExPASy Swiss-Prot
Match: Q4IEV5 (RNA exonuclease 4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=REX4 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.4e-19
Identity = 55/170 (32.35%), Postives = 97/170 (57.06%), Query Frame = 0


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVRY 191
           IA+DC M G G  G       + +VD     I++++V+P   +TN+R  V+G++++ +R+
Sbjct: 134 IAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRF 193

Query: 192 AMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A   +EVQ ++ K+L              + R+LVGHDL+HDL+ L +++P   +RDTA+
Sbjct: 194 ARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDTAK 253

Query: 252 YTPLMK-TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 301
           ++   K  N    SL+ L +  LG +I+ G H   E+  + M L+++ +S
Sbjct: 254 FSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHKS 289

[Close]

BLAST of CmoCh02G018570 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.2e-18
Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 0


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVRY 191
           IAMDC   G G +G       I +V+    ++ + FV+P   +  +R  V+G+  E ++ 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 192 AMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A+  KE Q+K   IL              + R+LVGH L+HDL+ L +++P  +LRDT+R
Sbjct: 182 AITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDTSR 241

Query: 252 YTPLMK--TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 301
           + P  K      + SLK LTR  L   I++G H   E+  + M LYK+ ++
Sbjct: 242 HLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKT 278

[Close]

BLAST of CmoCh02G018570 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-17
Identity = 54/167 (32.34%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 131 AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVR 190
           A+A+DC M G G  G   +   + +V++  K +++ +V+P  P+T+YR  V+G+  E ++
Sbjct: 243 ALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK 302

Query: 191 YAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTA 250
               L+ VQ++V ++L              K R+LVGH L +DL  L +++P   +RDT 
Sbjct: 303 QGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDTQ 362

Query: 251 RYTPLMKTNLVS--HSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLY 296
           +Y P  K+ + S   SL+ L+   LG  ++Q  H   ++  +AMRLY
Sbjct: 363 KYKP-FKSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLY 394

[Close]

BLAST of CmoCh02G018570 vs. ExPASy Swiss-Prot
Match: Q6CMT3 (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=REX4 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-17
Identity = 52/167 (31.14%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVRY 191
           ++MDC   G G DG       + +V+    ++ + FV+P  P+T++R  V+G+    +  
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179

Query: 192 AMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A+  ++ Q++V  +L              K R+LVGH + HDL  L +++P  M+RDT+R
Sbjct: 180 AVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIRDTSR 239

Query: 252 YTPLMK--TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYK 297
           + P  +  +   + SLK LT+  L  DI+ G H   E+  + M LYK
Sbjct: 240 HMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272

[Close]

BLAST of CmoCh02G018570 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-17
Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 0


Query: 122 EDRSDRGL-GAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE 181
           ++R+  GL   +AMDC M G G DG   I   + +V+   K +++ +V+P   +T+YR  
Sbjct: 224 KERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTA 283

Query: 182 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN 241
           V+G+  E V+   P K VQ++V +IL              + R LVGH + +DL  L ++
Sbjct: 284 VSGIRPEDVKKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLD 343

Query: 242 YPDHMLRDTARYTPL-MKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLY 296
           +P   +RDT +Y P   K      SLK L    L   ++ G H   ++  +AMRLY
Sbjct: 344 HPKKAIRDTQKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 385

[Close]

BLAST of CmoCh02G018570 vs. ExPASy TrEMBL
Match: A0A6J1EYI8 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111437384 PE=3 SV=1)

HSP 1 Score: 749.2 bits (1933), Expect = 8.0e-213
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0


Query: 1   MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH 60
           MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH
Sbjct: 1   MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH 60

Query: 61  LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY 120
           LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY
Sbjct: 61  LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY 120

Query: 121 DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE 180
           DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE
Sbjct: 121 DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE 180

Query: 181 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN 240
           VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN
Sbjct: 181 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN 240

Query: 241 YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 300
           YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS
Sbjct: 241 YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 300

Query: 301 LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ 360
           LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ
Sbjct: 301 LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ 360

Query: 361 T 362
           T
Sbjct: 361 T 361

[Close]

BLAST of CmoCh02G018570 vs. ExPASy TrEMBL
Match: A0A6J1ETD0 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111437384 PE=3 SV=1)

HSP 1 Score: 749.2 bits (1933), Expect = 8.0e-213
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0


Query: 1   MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH 60
           MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH
Sbjct: 9   MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH 68

Query: 61  LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY 120
           LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY
Sbjct: 69  LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY 128

Query: 121 DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE 180
           DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE
Sbjct: 129 DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE 188

Query: 181 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN 240
           VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN
Sbjct: 189 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN 248

Query: 241 YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 300
           YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS
Sbjct: 249 YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 308

Query: 301 LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ 360
           LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ
Sbjct: 309 LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ 368

Query: 361 T 362
           T
Sbjct: 369 T 369

[Close]

BLAST of CmoCh02G018570 vs. ExPASy TrEMBL
Match: A0A6J1K8M7 (RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111491129 PE=3 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 2.1e-205
Identity = 349/361 (96.68%), Postives = 352/361 (97.51%), Query Frame = 0


Query: 1   MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH 60
           MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH
Sbjct: 1   MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREH 60

Query: 61  LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCY 120
           LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSL GHQDICRLTAPVRQGTSLLPTDLSDCY
Sbjct: 61  LNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCY 120

Query: 121 DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHE 180
           DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQP IPI NYRHE
Sbjct: 121 DEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHE 180

Query: 181 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMN 240
           VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLR+NGGKARLLVGHDLEHDLDCLRMN
Sbjct: 181 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMN 240

Query: 241 YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 300
           YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS
Sbjct: 241 YPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 300

Query: 301 LNHHGLVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQ 360
           LNHHG V T LIAPPL QYV+HS+DSYSAKDLEKMTPD LYELSRSNFKCWCLDSR VMQ
Sbjct: 301 LNHHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQ 360

Query: 361 T 362
           T
Sbjct: 361 T 361

[Close]

BLAST of CmoCh02G018570 vs. ExPASy TrEMBL
Match: A0A6J1DNJ6 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111022742 PE=3 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 2.8e-181
Identity = 305/350 (87.14%), Postives = 327/350 (93.43%), Query Frame = 0


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           RHKCSACYKQYKKKEHLIEHM+VSYHS+HQPRCGVC KHCKSFESLREHL GPLSKSNCS
Sbjct: 14  RHKCSACYKQYKKKEHLIEHMKVSYHSIHQPRCGVCGKHCKSFESLREHLQGPLSKSNCS 73

Query: 72  KIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLGA 131
           KIF+EQGCGLCLRVLD R SL  H+DIC LTAPV QGTSLLPTDLSDCYDEDRSDR LGA
Sbjct: 74  KIFIEQGCGLCLRVLDGRRSLNEHRDICCLTAPVHQGTSLLPTDLSDCYDEDRSDRVLGA 133

Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVRY 191
           IAMDCVMAGGGSDGTLD+C+G+CLVDE+EKLIFNTFV+P IPITNYRHEVTGLTEE +RY
Sbjct: 134 IAMDCVMAGGGSDGTLDLCVGVCLVDEEEKLIFNTFVRPQIPITNYRHEVTGLTEEHMRY 193

Query: 192 AMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           AMPLKEVQEKVL+IL+NGE+I RLRLNGG+ARLLVGHDLEHDLDCLRMNYPDHMLRDTAR
Sbjct: 194 AMPLKEVQEKVLRILINGESIGRLRLNGGRARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 253

Query: 252 YTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGLVTTLL 311
           Y PLMKTNLVSHSLKYLTRTYLGYDI+QGVHDPYENCVS MRLYKRMR+L+HHG V    
Sbjct: 254 YHPLMKTNLVSHSLKYLTRTYLGYDIQQGVHDPYENCVSVMRLYKRMRNLDHHGQVMIPT 313

Query: 312 IAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDSRRVMQT 362
           +AP  AQYVAH++DS+S KDLEKMTPD LYE+SRSNFKCWCLDSRRVMQT
Sbjct: 314 VAPH-AQYVAHNLDSHSVKDLEKMTPDKLYEMSRSNFKCWCLDSRRVMQT 362

[Close]

BLAST of CmoCh02G018570 vs. ExPASy TrEMBL
Match: A0A6J1DN23 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111022742 PE=3 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 2.7e-168
Identity = 285/330 (86.36%), Postives = 307/330 (93.03%), Query Frame = 0


Query: 32  MRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCSKIFLEQGCGLCLRVLDDRTS 91
           M+VSYHS+HQPRCGVC KHCKSFESLREHL GPLSKSNCSKIF+EQGCGLCLRVLD R S
Sbjct: 1   MKVSYHSIHQPRCGVCGKHCKSFESLREHLQGPLSKSNCSKIFIEQGCGLCLRVLDGRRS 60

Query: 92  LRGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLGAIAMDCVMAGGGSDGTLDICI 151
           L  H+DIC LTAPV QGTSLLPTDLSDCYDEDRSDR LGAIAMDCVMAGGGSDGTLD+C+
Sbjct: 61  LNEHRDICCLTAPVHQGTSLLPTDLSDCYDEDRSDRVLGAIAMDCVMAGGGSDGTLDLCV 120

Query: 152 GICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGET 211
           G+CLVDE+EKLIFNTFV+P IPITNYRHEVTGLTEE +RYAMPLKEVQEKVL+IL+NGE+
Sbjct: 121 GVCLVDEEEKLIFNTFVRPQIPITNYRHEVTGLTEEHMRYAMPLKEVQEKVLRILINGES 180

Query: 212 IERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRT 271
           I RLRLNGG+ARLLVGHDLEHDLDCLRMNYPDHMLRDTARY PLMKTNLVSHSLKYLTRT
Sbjct: 181 IGRLRLNGGRARLLVGHDLEHDLDCLRMNYPDHMLRDTARYHPLMKTNLVSHSLKYLTRT 240

Query: 272 YLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGLVTTLLIAPPLAQYVAHSIDSYSAKD 331
           YLGYDI+QGVHDPYENCVS MRLYKRMR+L+HHG V    +AP  AQYVAH++DS+S KD
Sbjct: 241 YLGYDIQQGVHDPYENCVSVMRLYKRMRNLDHHGQVMIPTVAPH-AQYVAHNLDSHSVKD 300

Query: 332 LEKMTPDTLYELSRSNFKCWCLDSRRVMQT 362
           LEKMTPD LYE+SRSNFKCWCLDSRRVMQT
Sbjct: 301 LEKMTPDKLYEMSRSNFKCWCLDSRRVMQT 329

[Close]

BLAST of CmoCh02G018570 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 372.1 bits (954), Expect = 5.1e-103
Identity = 180/349 (51.58%), Postives = 240/349 (68.77%), Query Frame = 0


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L  H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+T+YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH-- 311

Query: 308 LVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLD 355
                 +    A+   + ++S    DLEKM  + LY+ S S ++CWCLD
Sbjct: 312 ------VCSGKAE--GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of CmoCh02G018570 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 372.1 bits (954), Expect = 5.1e-103
Identity = 180/349 (51.58%), Postives = 240/349 (68.77%), Query Frame = 0


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L  H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+T+YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH-- 311

Query: 308 LVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLD 355
                 +    A+   + ++S    DLEKM  + LY+ S S ++CWCLD
Sbjct: 312 ------VCSGKAE--GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of CmoCh02G018570 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 372.1 bits (954), Expect = 5.1e-103
Identity = 180/349 (51.58%), Postives = 240/349 (68.77%), Query Frame = 0


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L  H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+T+YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH-- 311

Query: 308 LVTTLLIAPPLAQYVAHSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLD 355
                 +    A+   + ++S    DLEKM  + LY+ S S ++CWCLD
Sbjct: 312 ------VCSGKAE--GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of CmoCh02G018570 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 365.2 bits (936), Expect = 6.2e-101
Identity = 177/361 (49.03%), Postives = 248/361 (68.70%), Query Frame = 0


Query: 3   ASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLN 62
           +S+ + E LR+KC+ACY+Q+ K EHL+EHM++SYHS H+P CGVC+KHC+SFESLREHL 
Sbjct: 5   SSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLI 64

Query: 63  GPLSKSNCSKIFLEQGCGLCLRVLDDRTSLRGHQDICRLTAPVRQG--TSLLPTDLSD-- 122
           GPL K  C  IF  +GC  C+ +L+   S R HQ+ C+ ++ V  G  T +    L D  
Sbjct: 65  GPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGLRDKA 124

Query: 123 --CYDEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITN 182
              Y   RS R    +A+ C M GGGSDG+LD+C  +C+ DE + +IF+T+V+P + +T+
Sbjct: 125 MIDYTSSRSPR---VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTS 184

Query: 183 YRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDC 242
           YR+E TG+  E +R AMPLK+VQ K+ + L NGE + ++R  GGKAR+LVGH L+HDLD 
Sbjct: 185 YRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDR 244

Query: 243 LRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYK 302
           L++ YP  M+RDTA+Y PLMKT+ +S+SLKYLT+ YLGYD+  G+ DPYE+CV+ MRLY 
Sbjct: 245 LQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYT 304

Query: 303 RMRSLNHHGLVTTLLIAPPLAQYVAHSID--SYSAKDLEKMTPDTLYELSRSNFKCWCLD 356
           RMR   H       + A PLA    +  +  ++   + E+M+PD +  +SRS++ CWCLD
Sbjct: 305 RMRYQKHK------IEAYPLAADAQNRSNQVAWRQSEAERMSPDEMLSISRSDYYCWCLD 355

[Close]

BLAST of CmoCh02G018570 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 357.5 bits (916), Expect = 1.3e-98
Identity = 172/351 (49.00%), Postives = 236/351 (67.24%), Query Frame = 0


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           R+KC  CY+Q+ KKEHL+EHMR+SYHSVH+P CG+C KHC+SF+SLREHL GPL K  C 
Sbjct: 5   RNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQECK 64

Query: 72  KIFLEQGCGLCLRVLDDRTSLRGHQDICRLT-----APVRQGTSLLPTDLSDCYDEDRSD 131
            IF  +GC  CL +L+   + R HQ+ C+L+       +R     L  + +  Y   RS 
Sbjct: 65  NIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNNSTIDYTSSRSP 124

Query: 132 RGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPHIPITNYRHEVTGLTE 191
           R    +A+ C M GGGSDG+LD+C  +C+ DE E ++F+T+V+P IP+TNYR+E+TG+  
Sbjct: 125 R---VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRP 184

Query: 192 ERVRYAMPLKEVQEKVLKILLNGETIERLRLNGGKARLLVGHDLEHDLDCLRMNYPDHML 251
           E +R AM LK  Q KV + L NGE + ++R   GKAR+LVGH L++ LD L++ Y   M+
Sbjct: 185 ENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMI 244

Query: 252 RDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGL 311
           RDTA Y PLMK++ +S+SLKYLT+ YLGYDI  G+ DPYE+CV+ MRLY RMR   H   
Sbjct: 245 RDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRA- 304

Query: 312 VTTLLIAPPLAQYVA--HSIDSYSAKDLEKMTPDTLYELSRSNFKCWCLDS 356
                 A PLA      ++  ++   +LE+M+P+ L +LSRS++ CWCLDS
Sbjct: 305 -----EAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDS 346

The following BLAST results are available for this feature:

BLAST of CmoCh02G018570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4IEV5	3.4e-19	32.35	RNA exonuclease 4 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9...	[more]
Q08237	2.2e-18	33.33	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]
Q9GZR2	1.1e-17	32.34	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6CMT3	5.5e-17	31.14	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]
Q91560	5.5e-17	32.95	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]

BLAST of CmoCh02G018570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYI8	8.0e-213	100.00	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111437384 PE=3 SV=1	[more]
A0A6J1ETD0	8.0e-213	100.00	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111437384 PE=3 SV=1	[more]
A0A6J1K8M7	2.1e-205	96.68	RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111491129 PE=3 SV=1	[more]
A0A6J1DNJ6	2.8e-181	87.14	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111022742 PE=3 SV=1	[more]
A0A6J1DN23	2.7e-168	86.36	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111022742 PE=3 SV=1	[more]

BLAST of CmoCh02G018570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G48100.1	5.1e-103	51.58	Exonuclease family protein	[more]
AT2G48100.2	5.1e-103	51.58	Exonuclease family protein	[more]
AT2G48100.3	5.1e-103	51.58	Exonuclease family protein	[more]
AT3G27970.1	6.2e-101	49.03	Exonuclease family protein	[more]
AT5G40310.1	1.3e-98	49.00	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 130..304 e-value: 3.1E-30 score: 116.5
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 147..284 e-value: 2.3E-5 score: 25.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 130..313 e-value: 9.5E-42 score: 144.6
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 9..358
None	No IPR available	PANTHER	PTHR12801:SF123	EXONUCLEASE FAMILY PROTEIN	coord: 9..358
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 15..37
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 13..42 score: 11.593128
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 132..296 e-value: 7.66562E-68 score: 208.524
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 132..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G018570.1	CmoCh02G018570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding