CmoCh02G018530 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G018530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH69-like
LocationCmo_Chr02: 10464025 .. 10467870 (+)
RNA-Seq ExpressionCmoCh02G018530
SyntenyCmoCh02G018530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAATAAAAAAACATCGATGATGAAGTTCGATTGGAACTTAGTCATATGTAGCTTGACTTTACATTTACAATGGCTTGCCGCTCCGACAGCATATTTCCCCCAGCTTTGTCGTGCTTCAATCAGACTAGCATTTTTTTTTTTCTCTCTGTTTATGTTCTCCGTTTTCCCTATCGAGACATTCGACAAAATAAAGTCCTGATGCTTTGTTTAATTTTGTTTCGCTTCAGTTCCAGATGAAGATCTGTTACTTAGAACCTGTCGCTCTTTCTGTACTATCATTATGTTTTTCCCTCTGGGCACTGTTTTTTTCTTTTTTTACTGACTTATTTTTCCATATAACGGTGTTTAACATCCTTCGCCATACATGTATTGGTATTCTGTCTGTTTTTCCTCTCGATCTTCTATTTTCTTAAGGCTTCTATGCTCCCTTATTGCTGTTTAGTGGTGCTTTTCGTTTCCCAGTAGCTTCTTTTACTTATTTATTGGTCCTGCCCTTTTTCTTCATGAAAACCCAGGAATGCTTTTCCTGTTTCGACAATTTGTTGTTTACAAAACATAGCTAGTACTTTTTAACATCGTATTTTCAAAAACAAATGGAAAATATGGGGAAATGCCCATTTCATGTGCTAGTAGGCGTTGGGTTTTCAAATGTCCCTTGGGTATGCTCAGGTAAATCGATATATTGGATGCCCCGGGAGAGATGTTCTAGGAATTTTCGATTTATGTTTCTGATTTTTTTTTAAGGAGTTATTTGGTAGGTGACTTAGAGTTACTCTCAAGAAATCTGTAATCGAGTACTAGTTCCCTCTCAATTGTTCTAACAACGGTGACTTCGGCCGATTCTTTCTTCCAGGTTCGTATTTGATTTTTGGGGTGATTTGACGCTTTGGAGCAGCTCTAGCTTATTCTAAGCAAATTTTAGCTTCCTCATAAGTTGTAGCAATGCTAAGAATAGCCAGTCATTTTTTAGTTCTTATCGTTAAGTGTTTCAGTTTGAGGACTGATTCCTTTTGAACTATTAAGGTTTAGAAAGTTGCAATGCAGGAAAAATGGAAGGACAAAATGGCTGCAATGGCTCTGTACAAATGCTCTCTCTGAATTTTGGTGCGAATGTCAACATTGTTTCCCAAGTACCTGGAGATTGTACTAACCACCACCATGTTTCGGCTGCTGATAGGAATCTAAACCAAACTAACTTCCCCCACATAATTGAGTGGACTCAAACTGCAAAAATGTCTCCGACCTTTGTTGAGTTTATTGCTGAAACTTCAAACTTTCCTAGAAAGGAATCTACCAAAGATATGATAGCAGTTGTTCCTGTCAGTTCCATTCAAACTATTGATGGAGTCTCTGAGATTCATGGAGAAATTTCATACAATCATCCCGCAGGTTCATACACTTCAAAACCTACTGATTCACGCAAGGTAAAGCCAATCTATACCAAGCCTAACATATGTGAAATAGTTATGGTCGTTACTGTGCTTTAGGCAATCTAGATCTTGTAAATATAAGGATATAGGCATATTCTCTGCTCTCAGTTTTGGGAACAATGTATATTAGCCATATTTATTGCTTAATCAACATTTATTACTAAATTACACCACTTTCTGGATCTTTTCATGTAATCCTAATATGTGACTTTCGGATCAGGACAATATGTCAGGTAGTCTATCCAAGCCACGTACCAGTTCATCAAGTAGACGAGGCTATTCAACTGACCGTGTAAGCGAAGCACCTTACCACTTGCAAAAATAAGAAATTAAATAAATAAAATCTATTACTATGCTTTACAAAAGAGCAGAAATGTGGTGGCATTAGTTTGAATTGTGAAATATACTCAAATTAGGTTATTTTGTCATCCAAAGTGAAGACAAAAATTAGTGGTGATTCCATATTTTATATTTAATAATCTATATGTTTACTTTTAACTAAGAACTAGCAAGATTGGATGTTATCTGTTGGGGCCAAATTTAACTTGTTTAACATGTCTTCTCATTTCAGCAACGCAGGATAAGGATAGCTGAAAGACTCGAAGCATTGCAGGCACTACTGCCTCTGGCTTCAAAGGTAAACTCGTGTGTCATTATGCCACAGAGAGGCATGAACTTTTATAAAATCTTCTAAGCACTAGATTGACTGATACCGTTCAATATATATCATTATAATAATGCATTGAGTAAGCGTGCTTGAGCCATTCTGCTGTCATAAATTTCCTGAATTTTATTGAGGATAAAACTATAAACGTACTTGAATGCATTATCTTTTGAACTTTCCATTTCTTTACCTGCAGCATAGGATAAATATCTTCTTTAAATCCATTTTAATTTTGGTTTCGCAAGGGAAATCAAGCATCTGCTCTAGATGATGTCATTGACCACATCAAGTACTTACAGCTTCAAATAAAGGTGGGCATCTTCGCCCTTGCTCTGTTTTGTACGTTTCTTTATAGGGTACTTTACAGTTTTGATCCATATGTGCTTGTAGCTTGTTGGCTTCATGGGTCTTCCTAACCACTGCTGGTGTTTTGCCGTCAATTGATTCCCACACTCGGGAAAAATGCTTTCGACGGCTTTCCGTCAATCTATACATAGCTCATTTCCTTCATAGTCTTAAACACACGAGATTTTGAGAGAGTTTTCAATCATTCTCTTTTAGTTAAAATATTTGATAAAGAAATTAATTTTGGTGGGTTTTAAATATTTGAGTGTATGAGGTACTTGGTGAGTTGAGTGTGCTCTTTTGTAATCTCATCTTTTGGAACATTAGTGGAAACATTCTCGTCATCTTTGCATGTGGATGTAGGCATAGTCTGAATGACACAAGTTCTTTTAATTTTTTTCTTCTCTCTTTTTACATTTGTTATTCAGATTATTTTCACTGTACATTTTAGCCTCTGCTCAGGTTTGAAGGGATGTTGGCGTGAGAGAGAGAGATCCATATGCTGGTAATGTAGATAAGAATTTGGCTCATCGAGCCCATACGCTGCTGATTATCTCAAATTGTATAAGCATTGATCCAAAATATTGGAGACTTGTAAAGAAATATAGTAAGCTAGTAGCAAAAACTTGGGCATGTTCTTGAGCAATAAGGGCCCATAGTCATAATGAATAAAATTGTTTCAATAAGCAGGCGACCTGCCAATACTTCGAAATATCTTAACGTACATTATGGTGTTATGGGTGAAGTTGCTTTAAAATGATTTTAAGGGTGTAGATGAAACTGAGGCATCTATGTGGCTGCGCAGGACTTGAGTCAGAGTAAAATAGGCGGAGAATCCTCTTCTGAGCCTTTCCTATTCGTTGAGGTATCATCACATGTTTGATTTTAGCATTTCACTACTTTCTTTTGGAAAGTTCATGCAATTCTCATGTACGGCTTTCTACTATTATTTCCATACTTAGAAATTTGGGGATGGAAAATAGAAGCTCCTTTATTATTGCTTTTGGTAGGGATATGGCCATTACATGAGCCATCACGAGATGCAGGGCGAGCCACTTGAAGAGATGGTAGGAAAATTGCTGGAAGTTGACCCGTTAGCTGCTGCTCAGCTGCTGGAGAACAAGGGTCTATTCGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGAACCATTTAATCAACCATGGAGCTTCCTGTATGAAACAGTTCTCTCTCGGTTAATGCTTCTGCTTTATTAAAGTACCTACGGCTTGTCAATCACCTCACTTGAAAGTAAAGATACCTGGGTAACACTGAAAAATGATAGTTTTGTTTGTCCGTAGCATCATTCCATTTTGGGGAAAAAAAAATCTCACTACGTTTGACAATCATTCTTATTTTTCCTCATGATTTCTGGGTTTTGTTA

mRNA sequence

TAAATAAAAAAACATCGATGATGAAGTTCGATTGGAACTTAGTCATATGTAGCTTGACTTTACATTTACAATGGCTTGCCGCTCCGACAGCATATTTCCCCCAGCTTTGTCGTGCTTCAATCAGACTAGCATTTTTTTTTTTCTCTCTGTTTATGTTCTCCGTTTTCCCTATCGAGACATTCGACAAAATAAAGTCCTGATGCTTTGTTTAATTTTGTTTCGCTTCAGTTCCAGATGAAGATCTGTTACTTAGAACCTGTCGCTCTTTCTGTACTATCATTATGTTTTTCCCTCTGGGCACTGTTTTTTTCTTTTTTTACTGACTTATTTTTCCATATAACGGTGTTTAACATCCTTCGCCATACATGTATTGGTATTCTGTCTGTTTTTCCTCTCGATCTTCTATTTTCTTAAGGCTTCTATGCTCCCTTATTGCTGTTTAGTGGTGCTTTTCGTTTCCCAGTAGCTTCTTTTACTTATTTATTGGTCCTGCCCTTTTTCTTCATGAAAACCCAGGAATGCTTTTCCTGTTTCGACAATTTGTTGTTTACAAAACATAGCTAGTACTTTTTAACATCGTATTTTCAAAAACAAATGGAAAATATGGGGAAATGCCCATTTCATGTGCTAGTAGGCGTTGGGTTTTCAAATGTCCCTTGGGTATGCTCAGGTAAATCGATATATTGGATGCCCCGGGAGAGATGTTCTAGGAATTTTCGATTTATGTTTCTGATTTTTTTTTAAGGAGTTATTTGGTAGGTGACTTAGAGTTACTCTCAAGAAATCTGTAATCGAGTACTAGTTCCCTCTCAATTGTTCTAACAACGGTGACTTCGGCCGATTCTTTCTTCCAGGAAAAATGGAAGGACAAAATGGCTGCAATGGCTCTGTACAAATGCTCTCTCTGAATTTTGGTGCGAATGTCAACATTGTTTCCCAAGTACCTGGAGATTGTACTAACCACCACCATGTTTCGGCTGCTGATAGGAATCTAAACCAAACTAACTTCCCCCACATAATTGAGTGGACTCAAACTGCAAAAATGTCTCCGACCTTTGTTGAGTTTATTGCTGAAACTTCAAACTTTCCTAGAAAGGAATCTACCAAAGATATGATAGCAGTTGTTCCTGTCAGTTCCATTCAAACTATTGATGGAGTCTCTGAGATTCATGGAGAAATTTCATACAATCATCCCGCAGGTTCATACACTTCAAAACCTACTGATTCACGCAAGGACAATATGTCAGGTAGTCTATCCAAGCCACGTACCAGTTCATCAAGTAGACGAGGCTATTCAACTGACCGTCAACGCAGGATAAGGATAGCTGAAAGACTCGAAGCATTGCAGGCACTACTGCCTCTGGCTTCAAAGGTAAACTCGCGACCTGCCAATACTTCGAAATATCTTAACGACTTGAGTCAGAGTAAAATAGGCGGAGAATCCTCTTCTGAGCCTTTCCTATTCGTTGAGGGATATGGCCATTACATGAGCCATCACGAGATGCAGGGCGAGCCACTTGAAGAGATGGTAGGAAAATTGCTGGAAGTTGACCCGTTAGCTGCTGCTCAGCTGCTGGAGAACAAGGGTCTATTCGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGAACCATTTAATCAACCATGGAGCTTCCTGTATGAAACAGTTCTCTCTCGGTTAATGCTTCTGCTTTATTAAAGTACCTACGGCTTGTCAATCACCTCACTTGAAAGTAAAGATACCTGGGTAACACTGAAAAATGATAGTTTTGTTTGTCCGTAGCATCATTCCATTTTGGGGAAAAAAAAATCTCACTACGTTTGACAATCATTCTTATTTTTCCTCATGATTTCTGGGTTTTGTTA

Coding sequence (CDS)

ATGGAAGGACAAAATGGCTGCAATGGCTCTGTACAAATGCTCTCTCTGAATTTTGGTGCGAATGTCAACATTGTTTCCCAAGTACCTGGAGATTGTACTAACCACCACCATGTTTCGGCTGCTGATAGGAATCTAAACCAAACTAACTTCCCCCACATAATTGAGTGGACTCAAACTGCAAAAATGTCTCCGACCTTTGTTGAGTTTATTGCTGAAACTTCAAACTTTCCTAGAAAGGAATCTACCAAAGATATGATAGCAGTTGTTCCTGTCAGTTCCATTCAAACTATTGATGGAGTCTCTGAGATTCATGGAGAAATTTCATACAATCATCCCGCAGGTTCATACACTTCAAAACCTACTGATTCACGCAAGGACAATATGTCAGGTAGTCTATCCAAGCCACGTACCAGTTCATCAAGTAGACGAGGCTATTCAACTGACCGTCAACGCAGGATAAGGATAGCTGAAAGACTCGAAGCATTGCAGGCACTACTGCCTCTGGCTTCAAAGGTAAACTCGCGACCTGCCAATACTTCGAAATATCTTAACGACTTGAGTCAGAGTAAAATAGGCGGAGAATCCTCTTCTGAGCCTTTCCTATTCGTTGAGGGATATGGCCATTACATGAGCCATCACGAGATGCAGGGCGAGCCACTTGAAGAGATGGTAGGAAAATTGCTGGAAGTTGACCCGTTAGCTGCTGCTCAGCTGCTGGAGAACAAGGGTCTATTCGTGATGCCCATGGATTTTGTTGAAGGATTATGCTGA

Protein sequence

MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTAKMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKPTDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPANTSKYLNDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVDPLAAAQLLENKGLFVMPMDFVEGLC
Homology
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BLAST of CmoCh02G018530 vs. ExPASy Swiss-Prot
Match: Q9ZUG9 (Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-04
Identity = 51/168 (30.36%), Postives = 76/168 (45.24%), Query Frame = 0 

Query: 118 SKPTDSRKDNMSGSLSKP---RTSSSSRRGYSTD------RQRRIRIAERLEALQALLPL 177
           ++P  S      G+++ P   RT   +RRG +TD      R RR RIAER++ALQ L+P 
Sbjct: 114 TQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPN 173

Query: 178 ASKVNSRP-----ANTSKYL----NDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQG-- 237
            +K +         +  K+L      LS S++GG +S    +   G  H  +   M G  
Sbjct: 174 GNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISEAGGSHGNASSAMVGGS 233

Query: 238 ----------EPLEEMVGKLLEVDPLAAAQLLENKGLFVMPMDFVEGL 256
                        E  V KL+E D  +A Q L+ KGL +MP+     +
Sbjct: 234 QTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 281

[Close]
BLAST of CmoCh02G018530 vs. ExPASy TrEMBL
Match: A0A6J1ESR3 (transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111437381 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.3e-129
Identity = 248/265 (93.58%), Postives = 249/265 (93.96%), Query Frame = 0 

Query: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA 60
           MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA
Sbjct: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA 60

Query: 61  KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP 120
           KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP
Sbjct: 61  KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP 120

Query: 121 TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPA--- 180
           TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASK N   A   
Sbjct: 121 TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKGNQASALDD 180

Query: 181 --NTSKYL----NDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD 240
             +  KYL     DLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD
Sbjct: 181 VIDHIKYLQLQIKDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD 240

Query: 241 PLAAAQLLENKGLFVMPMDFVEGLC 257
           PLAAAQLLENKGLFVMPMDFVEGLC
Sbjct: 241 PLAAAQLLENKGLFVMPMDFVEGLC 265

[Close]
BLAST of CmoCh02G018530 vs. ExPASy TrEMBL
Match: A0A6J1K067 (transcription factor bHLH69-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111491266 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.1e-126
Identity = 241/265 (90.94%), Postives = 246/265 (92.83%), Query Frame = 0 

Query: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA 60
           MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVS ADRN+NQTNFPHIIEWTQTA
Sbjct: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSPADRNINQTNFPHIIEWTQTA 60

Query: 61  KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP 120
           K SPTFVEFIAETSNFPRKESTKDMIAVVPVSS+QTIDGVSEIHGEISYNHPAGSYTSKP
Sbjct: 61  KTSPTFVEFIAETSNFPRKESTKDMIAVVPVSSVQTIDGVSEIHGEISYNHPAGSYTSKP 120

Query: 121 TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPA--- 180
           TDSRKDN+SGSLSKPRT+SSSRRGYSTDRQRRIRIAERLEALQALLPLASK N   A   
Sbjct: 121 TDSRKDNISGSLSKPRTTSSSRRGYSTDRQRRIRIAERLEALQALLPLASKGNQASALDD 180

Query: 181 --NTSKYL----NDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD 240
             +  KYL     DLSQSKIGGESSSEPFLFVEGYGHYMSH EMQGEPLEEMVGKLLEVD
Sbjct: 181 VIDHIKYLQLQIKDLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVD 240

Query: 241 PLAAAQLLENKGLFVMPMDFVEGLC 257
           PLAAAQLLENKGLFVMPMDFVEGLC
Sbjct: 241 PLAAAQLLENKGLFVMPMDFVEGLC 265

[Close]
BLAST of CmoCh02G018530 vs. ExPASy TrEMBL
Match: A0A6J1K988 (transcription factor bHLH69-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491266 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.1e-126
Identity = 241/265 (90.94%), Postives = 246/265 (92.83%), Query Frame = 0 

Query: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA 60
           MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVS ADRN+NQTNFPHIIEWTQTA
Sbjct: 28  MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSPADRNINQTNFPHIIEWTQTA 87

Query: 61  KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP 120
           K SPTFVEFIAETSNFPRKESTKDMIAVVPVSS+QTIDGVSEIHGEISYNHPAGSYTSKP
Sbjct: 88  KTSPTFVEFIAETSNFPRKESTKDMIAVVPVSSVQTIDGVSEIHGEISYNHPAGSYTSKP 147

Query: 121 TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPA--- 180
           TDSRKDN+SGSLSKPRT+SSSRRGYSTDRQRRIRIAERLEALQALLPLASK N   A   
Sbjct: 148 TDSRKDNISGSLSKPRTTSSSRRGYSTDRQRRIRIAERLEALQALLPLASKGNQASALDD 207

Query: 181 --NTSKYL----NDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD 240
             +  KYL     DLSQSKIGGESSSEPFLFVEGYGHYMSH EMQGEPLEEMVGKLLEVD
Sbjct: 208 VIDHIKYLQLQIKDLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVD 267

Query: 241 PLAAAQLLENKGLFVMPMDFVEGLC 257
           PLAAAQLLENKGLFVMPMDFVEGLC
Sbjct: 268 PLAAAQLLENKGLFVMPMDFVEGLC 292

[Close]
BLAST of CmoCh02G018530 vs. ExPASy TrEMBL
Match: A0A6J1K740 (transcription factor PIF7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491266 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.1e-110
Identity = 219/265 (82.64%), Postives = 222/265 (83.77%), Query Frame = 0 

Query: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA 60
           MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVS ADRN+NQTNFPHIIEWTQTA
Sbjct: 28  MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSPADRNINQTNFPHIIEWTQTA 87

Query: 61  KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP 120
           K SPTFVEFIAETSNFPRKESTKDMIAVVPVSS+QTIDGVSEIHGEISYNHPAGSYTSKP
Sbjct: 88  KTSPTFVEFIAETSNFPRKESTKDMIAVVPVSSVQTIDGVSEIHGEISYNHPAGSYTSKP 147

Query: 121 TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPA--- 180
           TDSRK                        QRRIRIAERLEALQALLPLASK N   A   
Sbjct: 148 TDSRK------------------------QRRIRIAERLEALQALLPLASKGNQASALDD 207

Query: 181 --NTSKYL----NDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD 240
             +  KYL     DLSQSKIGGESSSEPFLFVEGYGHYMSH EMQGEPLEEMVGKLLEVD
Sbjct: 208 VIDHIKYLQLQIKDLSQSKIGGESSSEPFLFVEGYGHYMSHQEMQGEPLEEMVGKLLEVD 267

Query: 241 PLAAAQLLENKGLFVMPMDFVEGLC 257
           PLAAAQLLENKGLFVMPMDFVEGLC
Sbjct: 268 PLAAAQLLENKGLFVMPMDFVEGLC 268

[Close]
BLAST of CmoCh02G018530 vs. ExPASy TrEMBL
Match: A0A6J1DMR9 (transcription factor bHLH69-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022673 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.3e-102
Identity = 197/265 (74.34%), Postives = 217/265 (81.89%), Query Frame = 0 

Query: 1   MEGQNGCNGSVQMLSLNFGANVNIVSQVPGDCTNHHHVSAADRNLNQTNFPHIIEWTQTA 60
           MEGQNGCN SVQ+LS+  GANVNIVS+VPGDCTNHHHV  ADR++NQTNFP + EWTQ  
Sbjct: 1   MEGQNGCNNSVQILSVKLGANVNIVSRVPGDCTNHHHVLPADRSVNQTNFPLLTEWTQNV 60

Query: 61  KMSPTFVEFIAETSNFPRKESTKDMIAVVPVSSIQTIDGVSEIHGEISYNHPAGSYTSKP 120
           K +PTFVEFIAETSNF RK STK+M+A VP S+I+ +DGVSEIHGE SYNHP GS +SKP
Sbjct: 61  KTTPTFVEFIAETSNFSRKASTKEMLANVPFSTIEAVDGVSEIHGEFSYNHPTGSDSSKP 120

Query: 121 TDSRKDNMSGSLSKPRTSSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPA--- 180
           TDSRK+   G LSKPR+SSSSRRGYSTDRQRRIRIAERLEALQ LLP +SK N       
Sbjct: 121 TDSRKNKAPGILSKPRSSSSSRRGYSTDRQRRIRIAERLEALQELLPQSSKGNQASVLDD 180

Query: 181 ------NTSKYLNDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVD 240
                 +    + DLSQSK+GGESSSEPF FVEGYGHYMSH EMQGEPLEEMVGKLLEVD
Sbjct: 181 VIDHVKHLQLQIKDLSQSKLGGESSSEPFRFVEGYGHYMSHQEMQGEPLEEMVGKLLEVD 240

Query: 241 PLAAAQLLENKGLFVMPMDFVEGLC 257
           P AAAQLLENKGLF+MPMDF EG C
Sbjct: 241 PSAAAQLLENKGLFLMPMDFAEGSC 265

[Close]
BLAST of CmoCh02G018530 vs. TAIR 10
Match: AT5G64980.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-17
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0 

Query: 138 SSSSRRGYSTDRQRRIRIAERLEALQALLPLASKVNSRPANTSK----------YLNDLS 197
           S+ S + Y+ +R+R+ RIA+ ++AL  LLP   + ++     +            + +LS
Sbjct: 216 STRSNKCYTNERERKQRIADNIKALGKLLPHKVEGDNHELTLNAMVDHVKLLHLQMKELS 275

Query: 198 QSKIGGESSSEPFLFVEGYGHYMSHHEMQGEPLEEMVGKLLEVDPLAAAQLLENKGLFVM 257
           +S++GGE  S P  F+EGYGHY+ H +   + LEE++  LL  D  AAA LLE+KGL++ 
Sbjct: 276 RSRLGGEPISHPMAFIEGYGHYIHHEQTMAKSLEEVMEDLLTKDFDAAANLLESKGLYLT 335

[Close]
BLAST of CmoCh02G018530 vs. TAIR 10
Match: AT2G24260.1 (LJRHL1-like 1 )

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-05
Identity = 51/168 (30.36%), Postives = 76/168 (45.24%), Query Frame = 0 

Query: 118 SKPTDSRKDNMSGSLSKP---RTSSSSRRGYSTD------RQRRIRIAERLEALQALLPL 177
           ++P  S      G+++ P   RT   +RRG +TD      R RR RIAER++ALQ L+P 
Sbjct: 114 TQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPN 173

Query: 178 ASKVNSRP-----ANTSKYL----NDLSQSKIGGESSSEPFLFVEGYGHYMSHHEMQG-- 237
            +K +         +  K+L      LS S++GG +S    +   G  H  +   M G  
Sbjct: 174 GNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISEAGGSHGNASSAMVGGS 233

Query: 238 ----------EPLEEMVGKLLEVDPLAAAQLLENKGLFVMPMDFVEGL 256
                        E  V KL+E D  +A Q L+ KGL +MP+     +
Sbjct: 234 QTAGNSNDSVTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 281

[Close]
BLAST of CmoCh02G018530 vs. TAIR 10
Match: AT4G02590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.6e-04
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = 0 

Query: 141 SRRGYSTD------RQRRIRIAERLEALQALLPLASKVN-----SRPANTSKYL----ND 200
           +RRG +TD      R RR RIAER+ ALQ L+P  +K +         +  K+L      
Sbjct: 148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 207

Query: 201 LSQSKIGGESSSEPFL-------FVE------GYGHYMSHHEMQGEPLEEMVGKLLEVDP 250
           LS S++GG  +  P +        VE      G     +  +   +  E  V KL+E + 
Sbjct: 208 LSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENV 267

[Close]
BLAST of CmoCh02G018530 vs. TAIR 10
Match: AT4G02590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.6e-04
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = 0 

Query: 141 SRRGYSTD------RQRRIRIAERLEALQALLPLASKVN-----SRPANTSKYL----ND 200
           +RRG +TD      R RR RIAER+ ALQ L+P  +K +         +  K+L      
Sbjct: 148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 207

Query: 201 LSQSKIGGESSSEPFL-------FVE------GYGHYMSHHEMQGEPLEEMVGKLLEVDP 250
           LS S++GG  +  P +        VE      G     +  +   +  E  V KL+E + 
Sbjct: 208 LSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENV 267

[Close]
BLAST of CmoCh02G018530 vs. TAIR 10
Match: AT4G02590.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.6e-04
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = 0 

Query: 141 SRRGYSTD------RQRRIRIAERLEALQALLPLASKVN-----SRPANTSKYL----ND 200
           +RRG +TD      R RR RIAER+ ALQ L+P  +K +         +  K+L      
Sbjct: 85  ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 144

Query: 201 LSQSKIGGESSSEPFL-------FVE------GYGHYMSHHEMQGEPLEEMVGKLLEVDP 250
           LS S++GG  +  P +        VE      G     +  +   +  E  V KL+E + 
Sbjct: 145 LSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENV 204

The following BLAST results are available for this feature:
BLAST of CmoCh02G018530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUG92.9e-0430.36Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1[more]
BLAST of CmoCh02G018530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ESR31.3e-12993.58transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111437381 P... [more]
A0A6J1K0673.1e-12690.94transcription factor bHLH69-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1K9883.1e-12690.94transcription factor bHLH69-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1K7403.1e-11082.64transcription factor PIF7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1DMR95.3e-10274.34transcription factor bHLH69-like isoform X2 OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of CmoCh02G018530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64980.18.8e-1737.21unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24260.12.0e-0530.36LJRHL1-like 1 [more]
AT4G02590.18.6e-0432.12basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT4G02590.28.6e-0432.12basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT4G02590.38.6e-0432.12basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..150
NoneNo IPR availablePANTHERPTHR16223TRANSCRIPTION FACTOR BHLH83-RELATEDcoord: 12..126
NoneNo IPR availablePANTHERPTHR16223TRANSCRIPTION FACTOR BHLH83-RELATEDcoord: 185..252
coord: 126..174
NoneNo IPR availablePANTHERPTHR16223:SF109TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1coord: 12..126
NoneNo IPR availablePANTHERPTHR16223:SF109TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1coord: 185..252
coord: 126..174

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G018530.1CmoCh02G018530.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity