CmoCh02G018520 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G018520
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
LocationCmo_Chr02: 10461434 .. 10463800 (-)
RNA-Seq ExpressionCmoCh02G018520
SyntenyCmoCh02G018520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAATGGTTGTACCTGTACGCGCCAGCTGCAGTATTTTCTCATACCAAGCACCCCACTTCTTTATTTGTTTATTTATTATACGTAATTTTCTTTTTCGTCCTTTTATTCTTTATATTATCATTTATATCCACTTATTTTCTCCATTTACTTATCAGGCGTACCACATACTTGAAATTGTACAAATTTCCCCTCCCGCCTCCTTTGTTTGTCCGTGCTTGAAACCCTACATTTTGCAATTCCCCCGCCATCATGAAGCTTGTTAGGTATGCTCTTCTTTTTTCTTACTCTGAGCTTCTTTTTTCTCGAACTACTCGTTGTTTGATGTATTTAGTGGTCGTTTTATGTTTAGAAACTTGGTTTTGATGAATTCACAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGGCACCATCACAGGTTTCCATTTCTCTTTCACTCACTAACTCGCACTGCATAAAAACTTCATTAATCTTGTTAAACCCTTAAACCCTAGATTTACGAACTTACTGGCAGAGGTTTTTTAAACTTTAACTTCCATTCTGTTTTCATCTTTGTACGCCACTATATTGGAAGTTGTAGAATATCTCAGTGCAAAGTGATAATTGGAATTTGGATTCTTTTGTCAATTTAGAGTGGTTTATGATATACCACAAGCCTTCTGGCTCTTGATAACCTTGGAATACGTAGATGTTTCTCGGCGACATTGCTACAAACTGGGGGTGACAACCCAACTTGGGAACTTTATTTTAGCTTCTCTTGGGGTGTTGAGGCTTCTGTAAGTAAGAGACTGCACAAACATCCTGTCTATCCTGGGGAGATTCATAACTTATTTTAACCAAAGGACTTTTCAGCTTTAGCAGGTTTTGGATAGTTCAATGAAAGTGGTTTTAGTGGAGATACAGTTGGATGAATCAATGGATCCTACTACTTTGTCTTGGCCAGCTTCTAATTGAACCCTATTGATCTTTTCTGCAAAGGCAATCCAACTACCAATTTCTCTATTTAAAAGAGCCAACAAGCACTCCACAATTATCCTCCAATGTAACCTTTGGTTTAGGTTTCATAGCAAATTCTTGTGGTTCCACCCCATATGCCGACCATCACCTCTCACCGTGACCATTTAAGGAGGGCACTATTTCTCTACTTATAGAAGAGCCAAACCCCAAGACCCAATGGAAGGGAAGTCCAACTCCATTTCGATCAAGTATCTTATATCCCCCATCCCCACACCCCAAAAAAAAAAAAAAAAAGTTGGTGATTATGATGAGATTGCATTTTGTTGTGGACACCTCCTATCCAGCTTCCACTTGATGTATTTTTCTATGTGCTGCTGGTTCTGAAACTAATTATTGTTGTCTTTTCTTACAACTGTTTTTATGGAAGAGTTCTACTCAATGTCATAGTTTTAGCTGGTCACACCTTCTGTTGTAGGATTTCACTTGAAACTATAAATAAGTGTCAATATATACAATATGCTTGAATAACATACCTTGCAGTGCATTATGACTTGGCCTAATTGAATAAGGGTCATGTAAATAACAAATGACTTGGAGAGAATGGATTCAAGCCATGTTGGTTACCTACTTAGGATTTATTATCCTATGACTTACCTTGGCAACAGAATATAGTAGGGTCAGTCAGTTGTCGCAGGTTGGATCTGAAATGAATGGATATGAAAAAAAATGAAAAATAAAAACCTATCTTGCACTTACAGCTTGTGAAATTTGTTTGGCCTAATATGTTGAAGCATCTAAATTACGCTCTACGTTCCTGTTTTCTATAATTTATTTCTAAAACATGCTCAGATGAGTATTATTATTATTTTTTTTTTAAAAAAGAACAATGACGGCATGAACTTGATGTAGAAGCTCTTACTCTTTTTGCTTAAAACCAAGCATTGGTCAAGGTTAGAAGTCATTGACGGGCTGATTTTCTTGTATCACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGCTGTCTTTGCATTTTGCCTGTACTTTATGGTGTTTTCTGAAAGTCAAATTGTTTATACTGAATCGTATGCCACCCAGTGTCAAATATGTTGCTTATGTATTTCCCCATTCTTTTGCAACTATAGGGAAGCCTTTGGGGCGTGGACGAGGACGAGGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAG

mRNA sequence

GTAATGGTTGTACCTGTACGCGCCAGCTGCAGCGTACCACATACTTGAAATTGTACAAATTTCCCCTCCCGCCTCCTTTGTTTGTCCGTGCTTGAAACCCTACATTTTGCAATTCCCCCGCCATCATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGGCACCATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAAGCCTTTGGGGCGTGGACGAGGACGAGGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAG

Coding sequence (CDS)

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACAGTTTCAATCGAGCTGAAAAATGGAACCGTTGTCCATGGCACCATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTAAAGCTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGAAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAAGCCTTTGGGGCGTGGACGAGGACGAGGCCGTGGGCGTGGTCGTGGTCGTGGACGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Homology
[Close]
BLAST of CmoCh02G018520 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-52
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGK-PLGRGRGRGRGRGRGRG 114
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.2e-52
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.0e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.0e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy TrEMBL
Match: A0A6J1EXE6 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437383 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.0e-53
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy TrEMBL
Match: A0A6J1HJI3 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464127 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.5e-53
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKP+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPMGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. ExPASy TrEMBL
Match: A0A0A0LD16 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.5e-53
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 206.8 bits (525), Expect = 9.0e-54
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGK-PLGRGRGRGRGRGRGRG 114
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGK P GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]
BLAST of CmoCh02G018520 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.1 bits (518), Expect = 5.8e-53
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.1 bits (518), Expect = 5.8e-53
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AGK +GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]
BLAST of CmoCh02G018520 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-51
Identity = 107/124 (86.29%), Postives = 112/124 (90.32%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGK-PLGRGRGRGRGRG 114
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGK P GRGRGRGRGRG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRG 120

[Close]
BLAST of CmoCh02G018520 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07
Identity = 34/113 (30.09%), Postives = 61/113 (53.98%), Query Frame = 0 

Query: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGR---GRGRG 114
            +R+ ++PD L    +      R+K K  + G  +GRGRG  RG+   G GRG
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLG--VGRGRGAMRGKPAAGPGRG 119

The following BLAST results are available for this feature:
BLAST of CmoCh02G018520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SY091.3e-5293.86Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P... [more]
Q9SSF18.2e-5291.23Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P... [more]
Q3ZC108.0e-3975.44Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1[more]
P623148.0e-3975.44Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=... [more]
Q4R5F68.0e-3975.44Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P... [more]
BLAST of CmoCh02G018520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K0702.0e-53100.00Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11149127... [more]
A0A6J1EXE62.0e-53100.00Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111437... [more]
A0A6J1HJI33.5e-5399.12Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita moschata OX=3662 GN=LOC111464... [more]
A0A6J1DVC44.5e-5399.12Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A0A0LD164.5e-5399.12Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900... [more]
BLAST of CmoCh02G018520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02840.19.0e-5493.86Small nuclear ribonucleoprotein family protein [more]
AT3G07590.15.8e-5391.23Small nuclear ribonucleoprotein family protein [more]
AT3G07590.25.8e-5391.23Small nuclear ribonucleoprotein family protein [more]
AT4G02840.22.4e-5186.29Small nuclear ribonucleoprotein family protein [more]
AT1G20580.16.3e-0730.09Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 1.1E-16
score: 71.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..69
e-value: 4.0E-18
score: 64.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..49
e-value: 2.3E-19
score: 71.5
coord: 50..82
e-value: 1.9E-11
score: 46.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..114
NoneNo IPR availablePANTHERPTHR23338:SF50SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..110
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..110
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 1.21591E-57
score: 170.869
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G018520.1CmoCh02G018520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
molecular_function GO:0003723 RNA binding