CmoCh02G018250 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G018250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 10322220 .. 10322846 (+)
RNA-Seq ExpressionCmoCh02G018250
SyntenyCmoCh02G018250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTTCTGAACCCTCCGATGATGGAGCCTTCGCAGCCCCAAAATCCCGACGACTACTCCGCTGCTACCACGATTATCACCTTCCAACGTCCAATTCCTCTTCTTCGCGGACCAATTCGATCCGGTCGATCTGAAAATCCATCGGCAGGTCCGTACTTGCTTGCATTTAGAGATCCTCAAGCTTGGAAATCTGCCTACAAAATCTGCGAGTCTAAAATCATCGAACAATGCGAGGCCGGCGCGAGGATCGGTTGCTCAATAACTGCTATCAACAAATGCAAGCGCCCGTGGTGGAGTTTTTTGATACAGTCGAAGAAAGGGCTGGATTTGAAGGATAGGGAGCTGTGCGAAGAGCGCGAAATGGAGGCTTGTTTGGCTGGCGCGAAGGAGAAGTGTGTCGGTTTTGCGAAGGAGAAGTGTTCTAAACCGTTCATGGAAGCTAGAATTGTAGCGAGGGGGAGAAATATAACAGAGAAGGAGGCGAAGATGTGGATTTGTTGGGCTTCAATGGCTGATAAAAAATTTTCTGTCCCTTCGTTTGAGATCGGCCGAAAGATTTCTGGAGTTGGTCTTGATAAGACGACTTATCGGGCTAATGAATTGTTTGACAATTATTTTTCTTGA

mRNA sequence

ATGAGCTTTCTGAACCCTCCGATGATGGAGCCTTCGCAGCCCCAAAATCCCGACGACTACTCCGCTGCTACCACGATTATCACCTTCCAACGTCCAATTCCTCTTCTTCGCGGACCAATTCGATCCGGTCGATCTGAAAATCCATCGGCAGGTCCGTACTTGCTTGCATTTAGAGATCCTCAAGCTTGGAAATCTGCCTACAAAATCTGCGAGTCTAAAATCATCGAACAATGCGAGGCCGGCGCGAGGATCGGTTGCTCAATAACTGCTATCAACAAATGCAAGCGCCCGTGGTGGAGTTTTTTGATACAGTCGAAGAAAGGGCTGGATTTGAAGGATAGGGAGCTGTGCGAAGAGCGCGAAATGGAGGCTTGTTTGGCTGGCGCGAAGGAGAAGTGTGTCGGTTTTGCGAAGGAGAAGTGTTCTAAACCGTTCATGGAAGCTAGAATTGTAGCGAGGGGGAGAAATATAACAGAGAAGGAGGCGAAGATGTGGATTTGTTGGGCTTCAATGGCTGATAAAAAATTTTCTGTCCCTTCGTTTGAGATCGGCCGAAAGATTTCTGGAGTTGGTCTTGATAAGACGACTTATCGGGCTAATGAATTGTTTGACAATTATTTTTCTTGA

Coding sequence (CDS)

ATGAGCTTTCTGAACCCTCCGATGATGGAGCCTTCGCAGCCCCAAAATCCCGACGACTACTCCGCTGCTACCACGATTATCACCTTCCAACGTCCAATTCCTCTTCTTCGCGGACCAATTCGATCCGGTCGATCTGAAAATCCATCGGCAGGTCCGTACTTGCTTGCATTTAGAGATCCTCAAGCTTGGAAATCTGCCTACAAAATCTGCGAGTCTAAAATCATCGAACAATGCGAGGCCGGCGCGAGGATCGGTTGCTCAATAACTGCTATCAACAAATGCAAGCGCCCGTGGTGGAGTTTTTTGATACAGTCGAAGAAAGGGCTGGATTTGAAGGATAGGGAGCTGTGCGAAGAGCGCGAAATGGAGGCTTGTTTGGCTGGCGCGAAGGAGAAGTGTGTCGGTTTTGCGAAGGAGAAGTGTTCTAAACCGTTCATGGAAGCTAGAATTGTAGCGAGGGGGAGAAATATAACAGAGAAGGAGGCGAAGATGTGGATTTGTTGGGCTTCAATGGCTGATAAAAAATTTTCTGTCCCTTCGTTTGAGATCGGCCGAAAGATTTCTGGAGTTGGTCTTGATAAGACGACTTATCGGGCTAATGAATTGTTTGACAATTATTTTTCTTGA

Protein sequence

MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDPQAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEEREMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADKKFSVPSFEIGRKISGVGLDKTTYRANELFDNYFS
Homology
BLAST of CmoCh02G018250 vs. ExPASy TrEMBL
Match: A0A6J1ES78 (uncharacterized protein LOC111437258 OS=Cucurbita moschata OX=3662 GN=LOC111437258 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.5e-118
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0

Query: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP 60
           MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP
Sbjct: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP 60

Query: 61  QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER 120
           QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER
Sbjct: 61  QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER 120

Query: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADKKFSVPS 180
           EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADKKFSVPS
Sbjct: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADKKFSVPS 180

Query: 181 FEIGRKISGVGLDKTTYRANELFDNYFS 209
           FEIGRKISGVGLDKTTYRANELFDNYFS
Sbjct: 181 FEIGRKISGVGLDKTTYRANELFDNYFS 208

BLAST of CmoCh02G018250 vs. ExPASy TrEMBL
Match: A0A6J1JZ34 (uncharacterized protein LOC111491021 OS=Cucurbita maxima OX=3661 GN=LOC111491021 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.2e-113
Identity = 199/208 (95.67%), Postives = 203/208 (97.60%), Query Frame = 0

Query: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP 60
           MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIR+GRSENPSAGPYLLAFRDP
Sbjct: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRAGRSENPSAGPYLLAFRDP 60

Query: 61  QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER 120
           QAW+SAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRE CEER
Sbjct: 61  QAWESAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDREQCEER 120

Query: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADKKFSVPS 180
           EMEACLAGAKEKCVGFAKEKCSKPFMEARIVA GRNITEKEAKMWICWASMADKKF  PS
Sbjct: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVAWGRNITEKEAKMWICWASMADKKFYAPS 180

Query: 181 FEIGRKISGVGLDKTTYRANELFDNYFS 209
           FEIGRK SGVGL+KTT+RANELFDNYFS
Sbjct: 181 FEIGRKFSGVGLEKTTHRANELFDNYFS 208

BLAST of CmoCh02G018250 vs. ExPASy TrEMBL
Match: A0A6J1CY74 (uncharacterized protein LOC111015296 OS=Momordica charantia OX=3673 GN=LOC111015296 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.9e-98
Identity = 172/203 (84.73%), Postives = 185/203 (91.13%), Query Frame = 0

Query: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP 60
           MSFLNPP+MEPSQPQNPDDYSA++TIITFQRPIPL+RGPIR+G SENPSAGPYLLAFRDP
Sbjct: 1   MSFLNPPIMEPSQPQNPDDYSASSTIITFQRPIPLIRGPIRAGPSENPSAGPYLLAFRDP 60

Query: 61  QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER 120
           QAW+SAYKICESKIIEQCEAGARIGCSITA NKCK PWW FLI S KGLDLK+RE CEER
Sbjct: 61  QAWESAYKICESKIIEQCEAGARIGCSITASNKCKPPWWGFLIHSSKGLDLKEREHCEER 120

Query: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADKKFSVPS 180
           EMEACLA AKEKCVGFAKEKCSKPFMEARIVARGR +TEKEAKMW+CWAS+ +K F +P 
Sbjct: 121 EMEACLAAAKEKCVGFAKEKCSKPFMEARIVARGRKVTEKEAKMWVCWASVGNKDFVIPL 180

Query: 181 FEIGRKISGVGLDKTTYRANELF 204
            EIGRK SGVG  +TTYRA ELF
Sbjct: 181 VEIGRKFSGVGHGETTYRAGELF 203

BLAST of CmoCh02G018250 vs. ExPASy TrEMBL
Match: A0A0A0LIR4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G228390 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 3.1e-68
Identity = 126/160 (78.75%), Postives = 142/160 (88.75%), Query Frame = 0

Query: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP 60
           MSF+N P MEPSQP NP +YS+++TIITFQRPIPLLRGP+R+ +SENPSAGPYLLAFRD 
Sbjct: 4   MSFVNSPTMEPSQPHNPHEYSSSSTIITFQRPIPLLRGPVRASQSENPSAGPYLLAFRDR 63

Query: 61  QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER 120
           QAW+SA++ CESKIIEQCE GARIGCSITA NKCK PWW FL++SKKGLDLK+RE CEE 
Sbjct: 64  QAWESAFRACESKIIEQCEVGARIGCSITASNKCKPPWWGFLLRSKKGLDLKEREQCEEL 123

Query: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARGRNITEK 161
           EMEACLA AKEKCVGFAKEKC KPFMEAR+V  GR +TEK
Sbjct: 124 EMEACLAVAKEKCVGFAKEKCYKPFMEARVVG-GRKLTEK 162

BLAST of CmoCh02G018250 vs. ExPASy TrEMBL
Match: A0A5A7UV37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G002790 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 9.1e-68
Identity = 125/154 (81.17%), Postives = 137/154 (88.96%), Query Frame = 0

Query: 1   MSFLNPPMMEPSQPQNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDP 60
           MSF+N P MEPSQP NP +YSA++TIITFQRPIPLLRGP+R+ +SENPSAGPYLLAF+D 
Sbjct: 1   MSFVNSPTMEPSQPHNPHEYSASSTIITFQRPIPLLRGPVRASQSENPSAGPYLLAFKDR 60

Query: 61  QAWKSAYKICESKIIEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEER 120
           QAW+SA+K CESKIIEQCEAGARIGCSITA NKCK PWW FL +SKKGLDLK+RE CEE 
Sbjct: 61  QAWESAFKACESKIIEQCEAGARIGCSITASNKCKPPWWGFLFRSKKGLDLKEREQCEEL 120

Query: 121 EMEACLAGAKEKCVGFAKEKCSKPFMEARIVARG 155
           EMEACLA AKEKCVGFAKEKC KPFMEARIV  G
Sbjct: 121 EMEACLAAAKEKCVGFAKEKCYKPFMEARIVRGG 154

BLAST of CmoCh02G018250 vs. TAIR 10
Match: AT3G63390.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-37
Identity = 76/160 (47.50%), Postives = 103/160 (64.38%), Query Frame = 0

Query: 15  QNPDDYSAATTIITFQRPIPLLRGPIRSGRSENPSAGPYLLAFRDPQAWKSAYKICESKI 74
           ++ DD+SAA T + F RPIPLLRGP+       PS G Y+LAFR   +W +A+K CE+ I
Sbjct: 3   EDDDDFSAAATTVVFDRPIPLLRGPV-------PSGGSYVLAFRSLDSWSAAFKRCETLI 62

Query: 75  IEQCEAGARIGCSITAINKCKRPWWSFLIQSKKGLDLKDRELCEEREMEACLAGAKEKCV 134
            +QCE GA+IGC+++A N CK PWW        G D+++RE CEERE E C+A AK KC 
Sbjct: 63  KDQCEEGAKIGCAVSASNNCKPPWW-----RGSGGDMREREKCEEREFEGCVAAAKGKCA 122

Query: 135 GFAKEKCSKPFMEARIVARGRNITEKEAKMWICWASMADK 175
            FAK+KCS  F++ARI        +KE +  +  ASM ++
Sbjct: 123 AFAKDKCSGAFLDARIA------KDKEVEGLVWLASMPEE 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ES782.5e-118100.00uncharacterized protein LOC111437258 OS=Cucurbita moschata OX=3662 GN=LOC1114372... [more]
A0A6J1JZ343.2e-11395.67uncharacterized protein LOC111491021 OS=Cucurbita maxima OX=3661 GN=LOC111491021... [more]
A0A6J1CY744.9e-9884.73uncharacterized protein LOC111015296 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A0A0LIR43.1e-6878.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G228390 PE=4 SV=1[more]
A0A5A7UV379.1e-6881.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT3G63390.11.3e-3747.50unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR36773EXPRESSED PROTEINcoord: 10..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G018250.1CmoCh02G018250.1mRNA