CmoCh02G018210 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G018210
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	beta-carotene isomerase D27, chloroplastic
Location	Cmo_Chr02: 10310328 .. 10314532 (+)
RNA-Seq Expression	CmoCh02G018210
Synteny	CmoCh02G018210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAGGCATTGAAAAAGCAAAAGCGATCCAACAACCGCTCAAAATTCACTCCTCTCATTCCTTCTCTGCTTCCACCATCTCCAGGTCTCCTCTTTCTCTCTTCTTTTCATCTCCACATTTTGTTTCTGTCTTCCATATACTAAACGGGGATTTTACGCTGCTCCAGATGTTTATCTGAATGCTTTCTACCATTTTGCAGGTTCAAAAATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGGTGTTCTTTTGAATTCTTACTCTTGCCTTTTTTTCCTCCAAAATTTGGAAGCAATTGAAACGTCGAAGCATGTTTAATTTTTCCTCATCTGCTGAACATCTATAAATTTCGAATGATTTTGATATTTTACTCGTATAAGGACATTACAACGACTGAGATAAGGTTATGTTTATGTTGCTGTATTTTGCGATCTTTGTTCCTTGAAATTGTTTCTGTGATAGCATTTTTTATTGATACCTAAGAATTTTAACATGGGGCTCTGAAATATTTTTCAGTTCTTGGTTTAGGGTAAGTGTAAGAATATTTTTCAGTTCTTGGTTTAGGGTAAGTGTAAGCTAGTTTTTTATAGGTTGGGCTAACAATTCGCAATTCAAATCCCCATGTAGTTTTATTTTTAAGCTACATGTTGTTGAGATTTGTACAATTATGTTGATGTATCTGCCAATGTGGATCTGTGTTCCTTAAATTTGTACTACAATACAATTTTTTGTTGACAGCTTTGAATTTTAATACGGGTCTCCGAAAATTCTTCTAATTATCTGCTTTTGGAGGGATGTGCAAGCTAGTTTTTGTGGGTTGGGCTGAAAATTCGCAATTCACTTTTTAATCTACTTGTAGTTAAGCTTAGTACGATTATGTTGTACCCTTTTTTATTGACAGCCTTGAACTTTAACATGGGACTCTGAAATCTATTTTAATTTTTTTTTTTTTAGGTGAGAAAGTGCAAGCTAGATTTTTTTTTTTTCTTTTCTTTTTTTGTAGGTTGGGCTGAAAAATTCTGAATTAAAATGCTCTAGTTTTTGAGGAACATGTAGTTAAGATTAGTATAACTAACTATGTTGATGTATCTACACCTTGTGATCTATGTTCTTCGAACTTCGACTGTATTGCCATTTTTTGTTGACAGCTTTGAATTTAACTAGTGTTTTGTAAAAGTTTAGAATTCAAATGCCCATGTACTATGAGTATTGTGATATTTTGTAGTTAACATGTGCTTTGAATTTAACTAGTGTTTTGTAGTTAACATGATTTCATTGACGTTGGTGTCTCTGAGTATTGTGATATTTGTTCGTTTAATCTTTATTCCATGGGGCTCTGAAATGTAATCTTCTGTAAACTATTATTTGTTTTATGCCGAAAGTGTAAGCTAGTGTTTTGTGGGCTGGGCTGAAAATTTACAATTCAAATGCCCTTGTAGTGTTTTATTTGTAAGCTACATTTGGGTTGAGTTCAAATGATTTCACTTAATTTGGGGCCTTGAATCGCACCAGTGTTGGGTCACTTTAACTTATGTAATCTCCGGATTGTGGGGTTCTAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGGTGGTGTGATTCCTCATATTCACAAGTCCCTCATTAACAAAGCCTCCAAGGATTGAGACATTCACTTGTATCACTAAGTAGTTTAGCTTAATCTTCAGACATTTACTACTGGCATCCAAGGATTGACACATTCATTCCTTGCATGCTTTTGTGAAGCCTTGTTATTATTTTCCCTCTTCCTTCTTTTGTGTATTTGGACAAGTATATTTGTTCAGTGTAAGATTGTTATGTTTTGTTGGATAGTTTTTAATTTACCTTACTTTCTACAACTTCATATCTTCATTCTTACTACCCTACTTCAATGCATATTTGAAGTATATATATACTTTTTTATTATTTTTGAATCTTCTCAGCATATCCGTCCCAAAAGAGGATTTTTCATAGAAGATGTCAATTGATTCTTCAAAATAAAATCGAAAAGGACATTGTTATGAATCAAAAAATGGAATATTTCGTAAGCGGGAAAGAATATTTGTGTTGGATAAAGCTAAGAATGAGTTAATTCCATTATTTAAAAGTACAAACCCAAATCAAATGGCATCTTTCCAAAGCCGGGAAGAATATTTGTTTTGTATAAATCCAAGAATTAATACATACAATTCATAATTTTTAGAGCATTATTCTAAATCCATAAATTAAATGGATATAAATATAGTTGTCATTTTTATGGTCCAAAGCTCCAAGCTTGAAATCATCTTATCTTCCATTGCCTGTATAAATACAACCACGCCTTCTTCTCAGCCCAAACTCTCATTTTTCTTGCTTCTTCTCTCTCTACAAAGTTATAAAAACACTTTTTTTTTTTTTTTTGTCTCTGCAAAAAGGAAATGGATGTAAAATTAATTCAAGAAAGGAGGGTCTTTTTGGGGAATTGGGGAAACTTGAGGGGCAACCACAAAAGAAAGTTGAGAAGGAAAACCACTTGTTGTGTTGCAGTGCTCACCGGAGCGGCAGAGAGAGGAGGAAATGAAGGAACGAGAAATCTCAATACGGTTTATACAGATAATTGGTTTGATAAGTTGGCTATTGATCATCTATCTGAGGCAGTACAGGCAACTTCAGGTGATTCATTTTAGTTTCCTTTTAATAAAATGGTAAAATGGAGTTATGGGGTAGGCCATATGTTTGCAGGTTGGAGAAGCAAAAAAAGTGGATATGAAAGCTTGGTGGAAGTGGCAACAATGGCGTCAAGAAATTTGAACCAAATCAAACAAAGAGAGGCCATGATTGAGGCACTTCAAAGGGCGTTTCCAAGGCCAATACTCTCTTTGGTAAACCCTCCTTCATTACCATATTTAATACCCTTTTTGGATCACGTCTAGTTTTTTCATTCTACTCAAAGTGCAGATAAGAACATTGCTGCCACAATCCAAATTCGCCAGAGAATATTTTGCCGCATTCACCACTGTCTTCTTTGCTTGGTTAGTCGGACCCTGCGAGGTAAATTTACCCGAAGCCCCTTTCACTTCGCGTGGGATTCAAGAACATTTTTTTTTTAAAAAACTACTTGATACGCAGGTGAAGGAATCAGAGTTGAATGGAAGAAGAGAGAGGAATGTTGTTCATATCCACAAGTGCAGGTATCTCTGTCTCGTATCAGAGTTGTATAATTATTATTATTATTATTATTATTATGCTTCCTCTAAGCTAAGCCCTCTGTACTTGCAGGTTCTTAGAGCAGACAAACTGTGTTGGAATGTGCATTAATCTATGCAAGTTTCCAACTCAGGATTTCATCAAGGATTCTTTGGGAATGCCAGTGAGCATGATCCCCAGTAAGTCTCCTCACTAAGCTACACAATCACCAAACATTTGCAGCAACCAAAGCAGCGTGTCTTCTTCTTCTTTGCAGATTTTGATGACATGAGCTGTGAGATGAAATTTGGAGAGGACCCACCAGCTTCAATCGAAGATCCAGCGCTCAACCAGCCATGTTACAAACTATGTATACTCTTCTTCTTCTTCTTCTTCTTTACCTTCACGTGGCATGGTAATTCAAAGTTAAAAAAATGAATTCTAACCTACTTCCTTTACTCTTTGGCAGGCAAAAAGAAAGAAAAACACGACACAGACAAACTGAATCAGTTAAAGAAAAGAGACGCAGAAAGCAAGATTTTTGAATCACATCCATTTTAGCTCCTAATTGTTTTTGTTTTCAATGTTTTCACGAGCGCAGGAGAAGCTCCGTTCTTCTTCTTTTTCCTAGATTTACACAACTTCGCAGGAATCTGGGTTTCCTAGTGTGTCCAAACACGAATATGATTAGGCTAATTTGAACCACAAATTACAAGGACAATATTGATGATAACTTCTAATTCTCCTA

mRNA sequence

AAGGAAGGCATTGAAAAAGCAAAAGCGATCCAACAACCGCTCAAAATTCACTCCTCTCATTCCTTCTCTGCTTCCACCATCTCCAGGTTCAAAAATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGTGCTCACCGGAGCGGCAGAGAGAGGAGGAAATGAAGGAACGAGAAATCTCAATACGGTTTATACAGATAATTGGTTTGATAAGTTGGCTATTGATCATCTATCTGAGGCAGTACAGGCAACTTCAGGTTGGAGAAGCAAAAAAAGTGGATATGAAAGCTTGGTGGAAGTGGCAACAATGGCGTCAAGAAATTTGAACCAAATCAAACAAAGAGAGGCCATGATTGAGGCACTTCAAAGGGCGTTTCCAAGGCCAATACTCTCTTTGATAAGAACATTGCTGCCACAATCCAAATTCGCCAGAGAATATTTTGCCGCATTCACCACTGTCTTCTTTGCTTGGTTAGTCGGACCCTGCGAGGTGAAGGAATCAGAGTTGAATGGAAGAAGAGAGAGGAATGTTGTTCATATCCACAAGTGCAGGTTCTTAGAGCAGACAAACTGTGTTGGAATGTGCATTAATCTATGCAAGTTTCCAACTCAGGATTTCATCAAGGATTCTTTGGGAATGCCAGTGAGCATGATCCCCAATTTTGATGACATGAGCTGTGAGATGAAATTTGGAGAGGACCCACCAGCTTCAATCGAAGATCCAGCGCTCAACCAGCCATGTTACAAACTATGCAAAAAGAAAGAAAAACACGACACAGACAAACTGAATCAGTTAAAGAAAAGAGACGCAGAAAGCAAGATTTTTGAATCACATCCATTTTAGCTCCTAATTGTTTTTGTTTTCAATGTTTTCACGAGCGCAGGAGAAGCTCCGTTCTTCTTCTTTTTCCTAGATTTACACAACTTCGCAGGAATCTGGGTTTCCTAGTGTGTCCAAACACGAATATGATTAGGCTAATTTGAACCACAAATTACAAGGACAATATTGATGATAACTTCTAATTCTCCTA

Coding sequence (CDS)

ATGGCGGGAAAAGGCGGCAAGGGGCTTTTAGCCGCAAAGACTCCAGCTGCTAACAAAGATAAGGACAAGGACAAGAAGAAGCCCATCTCTCGGTCCTCCCGTGCTGGTATACAGTTCCCAGTGGGACGAATTCACAGGCATCTTAAAACAAGAATATCTGCAAATGGGCGAGTTGGTGCGACTGCTGCAGTGTACCTAGCATCAATTCTGGAGTATCTGACCGCGGAAGTGCTGGAGTTGGCTGGAAATGCGAGCAAGGATCTGAAAGTGAAGAGGATCACTCCAAGACACCTTCAGCTGGCCATTAGAGGAGACGAAGAGCTTGATACCCTGATCAAAGGAACCATTGCTGGAGTGCTCACCGGAGCGGCAGAGAGAGGAGGAAATGAAGGAACGAGAAATCTCAATACGGTTTATACAGATAATTGGTTTGATAAGTTGGCTATTGATCATCTATCTGAGGCAGTACAGGCAACTTCAGGTTGGAGAAGCAAAAAAAGTGGATATGAAAGCTTGGTGGAAGTGGCAACAATGGCGTCAAGAAATTTGAACCAAATCAAACAAAGAGAGGCCATGATTGAGGCACTTCAAAGGGCGTTTCCAAGGCCAATACTCTCTTTGATAAGAACATTGCTGCCACAATCCAAATTCGCCAGAGAATATTTTGCCGCATTCACCACTGTCTTCTTTGCTTGGTTAGTCGGACCCTGCGAGGTGAAGGAATCAGAGTTGAATGGAAGAAGAGAGAGGAATGTTGTTCATATCCACAAGTGCAGGTTCTTAGAGCAGACAAACTGTGTTGGAATGTGCATTAATCTATGCAAGTTTCCAACTCAGGATTTCATCAAGGATTCTTTGGGAATGCCAGTGAGCATGATCCCCAATTTTGATGACATGAGCTGTGAGATGAAATTTGGAGAGGACCCACCAGCTTCAATCGAAGATCCAGCGCTCAACCAGCCATGTTACAAACTATGCAAAAAGAAAGAAAAACACGACACAGACAAACTGAATCAGTTAAAGAAAAGAGACGCAGAAAGCAAGATTTTTGAATCACATCCATTTTAG

Protein sequence

MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGVLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF

Homology

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BLAST of CmoCh02G018210 vs. ExPASy Swiss-Prot
Match: R4HZ96 (Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27 PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 8.1e-82
Identity = 144/223 (64.57%), Postives = 179/223 (80.27%), Query Frame = 0


Query: 116 IAGVLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATSGWRSKKSGYESLVEV 175
           + GVL    +    E  R  N VY DNWFDKLAI+HLS++VQA +G  + KSG++SLVE 
Sbjct: 31  VVGVLARPTDDISEETLRKTN-VYKDNWFDKLAINHLSKSVQAATGISNNKSGFDSLVEA 90

Query: 176 ATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVG 235
           AT+AS+  N  +Q+  +++AL RAFP+PILS+IR ++P SK AREYFA FTT+FFAWL+G
Sbjct: 91  ATVASQKFNTTQQQGIILDALDRAFPKPILSVIRRVMPPSKLAREYFAVFTTIFFAWLLG 150

Query: 236 PCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPN 295
           P EV+ESE+NGRRE+N+VHI KCRFLE+TNCVGMCINLCK P+Q FIKDS GMPV+M+PN
Sbjct: 151 PSEVRESEINGRREKNIVHIKKCRFLEETNCVGMCINLCKMPSQLFIKDSFGMPVNMVPN 210

Query: 296 FDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKHDTDKLN 339
           FDDMSCEM FG++PPAS +DPAL QPCYKLCK K+ H T  L+
Sbjct: 211 FDDMSCEMIFGQEPPASTDDPALKQPCYKLCKAKKNHATQCLS 252

[Close]

BLAST of CmoCh02G018210 vs. ExPASy Swiss-Prot
Match: C7AU21 (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=D27 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 6.9e-65
Identity = 119/197 (60.41%), Postives = 150/197 (76.14%), Query Frame = 0


Query: 137 TVYTDNWFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATMASRNLNQIKQREAMIEAL 196
           TVY D+WFDKLAI +LS  +Q  SG +++K GYESL++ A   SR  +  KQ E + +AL
Sbjct: 78  TVYRDSWFDKLAIGYLSRNLQEASGLKNEKDGYESLIDAALAISRIFSLDKQSEIVTQAL 137

Query: 197 QRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIH 256
           +RA P  IL++I+ ++P S+F+REYFAAFTT+FF WLVGPCEV ESE+ GR+E+NVV+I 
Sbjct: 138 ERALPSYILTMIKVMMPPSRFSREYFAAFTTIFFPWLVGPCEVMESEVEGRKEKNVVYIP 197

Query: 257 KCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDP 316
           KCRFLE TNCVGMC NLCK P Q FI+DSLGM V M PNF+DMSCEM FG+ PP   +DP
Sbjct: 198 KCRFLESTNCVGMCTNLCKIPCQKFIQDSLGMKVYMSPNFEDMSCEMIFGQQPPE--DDP 257

Query: 317 ALNQPCYKL-CKKKEKH 333
           AL QPC++  C  K+ H
Sbjct: 258 ALKQPCFRTKCVAKQNH 272

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BLAST of CmoCh02G018210 vs. ExPASy Swiss-Prot
Match: Q7XA78 (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D27 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 6.9e-57
Identity = 108/222 (48.65%), Postives = 153/222 (68.92%), Query Frame = 0


Query: 113 KGTIAGVLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATSG--WRSKKSGYE 172
           K   +G L  A E    E +   N    D++F K+AI++LS+ +Q  +G    SK + Y+
Sbjct: 39  KPVYSGKLKAAKETARIETSNTKNASIEDSFFSKIAINYLSKNLQDAAGISSSSKSTDYD 98

Query: 173 SLVEVATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFF 232
            LV+ AT  SRN +  +Q E ++ +L RA P  I SLI+   P SK +RE FA FTT+ F
Sbjct: 99  RLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISF 158

Query: 233 AWLVGPCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPV 292
           AWLVGP EV+E+E+NGR+E++VV+I KCRFLEQ+NCVGMC ++CK P+Q FIK+SLGMP+
Sbjct: 159 AWLVGPSEVRETEVNGRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGMPI 218

Query: 293 SMIPNFDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH 333
            M P+F+D+SC+M FG +PP   +DPA+ QPC++ CK  + +
Sbjct: 219 YMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFEFCKSNKSY 260

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BLAST of CmoCh02G018210 vs. ExPASy Swiss-Prot
Match: O23628 (Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.6e-53
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118

[Close]

BLAST of CmoCh02G018210 vs. ExPASy Swiss-Prot
Match: Q8S857 (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-49
Identity = 108/121 (89.26%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAAN--KDKDKDKKK-PISRSSRAGIQFPVGRIHRHLKTRISANGR 60
           MAGKGGKGLLAAKT AA    DKDKD+KK P+SRSSRAGIQFPVGRIHR LK R+SANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 119
           VGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

[Close]

BLAST of CmoCh02G018210 vs. ExPASy TrEMBL
Match: A0A6J1ESQ1 (beta-carotene isomerase D27, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437410 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 7.3e-134
Identity = 246/273 (90.11%), Postives = 251/273 (91.94%), Query Frame = 0


Query: 88  LKVKRITPRHLQLA----IRGDEELDTLIKGT-IAGVLTGAAERGGNEGTRNLNTVYTDN 147
           + VK I  R + L     +RG+ +     K T    VLTGAAERGGNEGTRNLNTVYTDN
Sbjct: 1   MDVKLIQERRVFLGNWGNLRGNHKRKLRRKTTCCVAVLTGAAERGGNEGTRNLNTVYTDN 60

Query: 148 WFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQRAFPR 207
           WFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQRAFPR
Sbjct: 61  WFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQRAFPR 120

Query: 208 PILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHKCRFLE 267
           PILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHKCRFLE
Sbjct: 121 PILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHKCRFLE 180

Query: 268 QTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPALNQPC 327
           QTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPALNQPC
Sbjct: 181 QTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPALNQPC 240

Query: 328 YKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF 356
           YKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF
Sbjct: 241 YKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF 273

[Close]

BLAST of CmoCh02G018210 vs. ExPASy TrEMBL
Match: A0A6J1ESU9 (beta-carotene isomerase D27, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437410 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 5.2e-132
Identity = 246/278 (88.49%), Postives = 251/278 (90.29%), Query Frame = 0


Query: 88  LKVKRITPRHLQLA----IRGDEELDTLIKGT-IAGVLTGAAERGGNEGTRNLNTVYTDN 147
           + VK I  R + L     +RG+ +     K T    VLTGAAERGGNEGTRNLNTVYTDN
Sbjct: 1   MDVKLIQERRVFLGNWGNLRGNHKRKLRRKTTCCVAVLTGAAERGGNEGTRNLNTVYTDN 60

Query: 148 WFDKLAIDHLSEAVQATS-----GWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQ 207
           WFDKLAIDHLSEAVQATS     GWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQ
Sbjct: 61  WFDKLAIDHLSEAVQATSGHMFAGWRSKKSGYESLVEVATMASRNLNQIKQREAMIEALQ 120

Query: 208 RAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHK 267
           RAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHK
Sbjct: 121 RAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCEVKESELNGRRERNVVHIHK 180

Query: 268 CRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPA 327
           CRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPA
Sbjct: 181 CRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDDMSCEMKFGEDPPASIEDPA 240

Query: 328 LNQPCYKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF 356
           LNQPCYKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF
Sbjct: 241 LNQPCYKLCKKKEKHDTDKLNQLKKRDAESKIFESHPF 278

[Close]

BLAST of CmoCh02G018210 vs. ExPASy TrEMBL
Match: A0A6J1K233 (beta-carotene isomerase D27, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491020 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 2.4e-116
Identity = 208/214 (97.20%), Postives = 210/214 (98.13%), Query Frame = 0


Query: 119 VLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATM 178
           VLTGAAERGGNE TRNLN VY DNWFDKLAIDHLSEAVQATSGWRS+KSGYESLVEVATM
Sbjct: 37  VLTGAAERGGNEETRNLNAVYRDNWFDKLAIDHLSEAVQATSGWRSEKSGYESLVEVATM 96

Query: 179 ASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCE 238
           ASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCE
Sbjct: 97  ASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCE 156

Query: 239 VKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDD 298
           VKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQ+FIKDSLGMPVSM PNFDD
Sbjct: 157 VKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQEFIKDSLGMPVSMTPNFDD 216

Query: 299 MSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH 333
           MSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH
Sbjct: 217 MSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH 250

[Close]

BLAST of CmoCh02G018210 vs. ExPASy TrEMBL
Match: A0A6J1K5Z4 (beta-carotene isomerase D27, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491020 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.7e-114
Identity = 208/219 (94.98%), Postives = 210/219 (95.89%), Query Frame = 0


Query: 119 VLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATS-----GWRSKKSGYESLV 178
           VLTGAAERGGNE TRNLN VY DNWFDKLAIDHLSEAVQATS     GWRS+KSGYESLV
Sbjct: 37  VLTGAAERGGNEETRNLNAVYRDNWFDKLAIDHLSEAVQATSAHIFAGWRSEKSGYESLV 96

Query: 179 EVATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWL 238
           EVATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWL
Sbjct: 97  EVATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWL 156

Query: 239 VGPCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMI 298
           VGPCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQ+FIKDSLGMPVSM 
Sbjct: 157 VGPCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQEFIKDSLGMPVSMT 216

Query: 299 PNFDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH 333
           PNFDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH
Sbjct: 217 PNFDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH 255

[Close]

BLAST of CmoCh02G018210 vs. ExPASy TrEMBL
Match: A0A6J1HUP9 (beta-carotene isomerase D27, chloroplastic-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111466998 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 3.6e-101
Identity = 180/217 (82.95%), Postives = 196/217 (90.32%), Query Frame = 0


Query: 119 VLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATSGWRSKKSGYESLVEVATM 178
           VLT AAE G  E TR  NTVYTDNWF+K+AI H+S+AVQATSGWRSKKSGYESLVEVATM
Sbjct: 38  VLTRAAESGATEETRKPNTVYTDNWFEKIAIHHVSQAVQATSGWRSKKSGYESLVEVATM 97

Query: 179 ASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCE 238
           ASRN NQIKQRE +I+AL RAFP PILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCE
Sbjct: 98  ASRNYNQIKQREVIIQALGRAFPAPILSLIRTLLPQSKFAREYFAAFTTVFFAWLVGPCE 157

Query: 239 VKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPVSMIPNFDD 298
           VKES+  G++E+NVV IHKCRFLEQTNC GMCINLCKFP QDFIKDSLGMPVSM+PNFDD
Sbjct: 158 VKESDFKGKKEKNVVQIHKCRFLEQTNCAGMCINLCKFPCQDFIKDSLGMPVSMVPNFDD 217

Query: 299 MSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKHDTD 336
           MSCEM FG+DPPA+++DPAL QPCYKLCK KEKH T+
Sbjct: 218 MSCEMIFGKDPPAAVDDPALKQPCYKLCKTKEKHTTN 254

[Close]

BLAST of CmoCh02G018210 vs. TAIR 10
Match: AT1G03055.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 222.6 bits (566), Expect = 4.9e-58
Identity = 108/222 (48.65%), Postives = 153/222 (68.92%), Query Frame = 0


Query: 113 KGTIAGVLTGAAERGGNEGTRNLNTVYTDNWFDKLAIDHLSEAVQATSG--WRSKKSGYE 172
           K   +G L  A E    E +   N    D++F K+AI++LS+ +Q  +G    SK + Y+
Sbjct: 39  KPVYSGKLKAAKETARIETSNTKNASIEDSFFSKIAINYLSKNLQDAAGISSSSKSTDYD 98

Query: 173 SLVEVATMASRNLNQIKQREAMIEALQRAFPRPILSLIRTLLPQSKFAREYFAAFTTVFF 232
            LV+ AT  SRN +  +Q E ++ +L RA P  I SLI+   P SK +RE FA FTT+ F
Sbjct: 99  RLVDTATRVSRNFDTKQQHEFVLSSLDRALPTVISSLIKMAFPPSKVSRELFALFTTISF 158

Query: 233 AWLVGPCEVKESELNGRRERNVVHIHKCRFLEQTNCVGMCINLCKFPTQDFIKDSLGMPV 292
           AWLVGP EV+E+E+NGR+E++VV+I KCRFLEQ+NCVGMC ++CK P+Q FIK+SLGMP+
Sbjct: 159 AWLVGPSEVRETEVNGRKEKSVVYIEKCRFLEQSNCVGMCTHICKIPSQIFIKNSLGMPI 218

Query: 293 SMIPNFDDMSCEMKFGEDPPASIEDPALNQPCYKLCKKKEKH 333
            M P+F+D+SC+M FG +PP   +DPA+ QPC++ CK  + +
Sbjct: 219 YMEPDFNDLSCKMMFGREPPEIEDDPAMKQPCFEFCKSNKSY 260

[Close]

BLAST of CmoCh02G018210 vs. TAIR 10
Match: AT3G54560.1 (histone H2A 11 )

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-54
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGL+AAKT AANKDKDKDKKKPISRS+RAGIQFPVGRIHR LKTR+SA+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118

[Close]

BLAST of CmoCh02G018210 vs. TAIR 10
Match: AT2G38810.1 (histone H2A 8 )

HSP 1 Score: 196.1 bits (497), Expect = 4.9e-50
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118

[Close]

BLAST of CmoCh02G018210 vs. TAIR 10
Match: AT2G38810.3 (histone H2A 8 )

HSP 1 Score: 196.1 bits (497), Expect = 4.9e-50
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118

[Close]

BLAST of CmoCh02G018210 vs. TAIR 10
Match: AT2G38810.2 (histone H2A 8 )

HSP 1 Score: 196.1 bits (497), Expect = 4.9e-50
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MAGKGGKGLLAAKTPAANKDKDKDKKKPISRSSRAGIQFPVGRIHRHLKTRISANGRVGA 60
           MAGKGGKGLLAAKT AA  +KD  KKK ISRSSRAGIQFPVGRIHR LK R+SA+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 119
           TAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 118

The following BLAST results are available for this feature:

BLAST of CmoCh02G018210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
R4HZ96	8.1e-82	64.57	Beta-carotene isomerase D27, chloroplastic OS=Medicago truncatula OX=3880 GN=D27...	[more]
C7AU21	6.9e-65	60.41	Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica OX=39...	[more]
Q7XA78	6.9e-57	48.65	Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=D2...	[more]
O23628	1.6e-53	94.07	Histone H2A variant 1 OS=Arabidopsis thaliana OX=3702 GN=H2AV PE=1 SV=1	[more]
Q8S857	5.3e-49	89.26	Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g...	[more]

BLAST of CmoCh02G018210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESQ1	7.3e-134	90.11	beta-carotene isomerase D27, chloroplastic-like isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1ESU9	5.2e-132	88.49	beta-carotene isomerase D27, chloroplastic-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1K233	2.4e-116	97.20	beta-carotene isomerase D27, chloroplastic-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1K5Z4	1.7e-114	94.98	beta-carotene isomerase D27, chloroplastic-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1HUP9	3.6e-101	82.95	beta-carotene isomerase D27, chloroplastic-like isoform X3 OS=Cucurbita maxima O...	[more]

BLAST of CmoCh02G018210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03055.1	4.9e-58	48.65	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G54560.1	1.1e-54	94.07	histone H2A 11	[more]
AT2G38810.1	4.9e-50	89.83	histone H2A 8	[more]
AT2G38810.3	4.9e-50	89.83	histone H2A 8	[more]
AT2G38810.2	4.9e-50	89.83	histone H2A 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 27..49 score: 68.12 coord: 86..100 score: 65.78 coord: 72..85 score: 84.63 coord: 57..72 score: 69.94
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 16..132 e-value: 1.6E-54 score: 197.2
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 28..120 e-value: 9.37746E-52 score: 165.971
IPR025114	Beta-carotene isomerase D27-like, C-terminal	PFAM	PF13225	DUF4033	coord: 232..311 e-value: 3.3E-34 score: 116.7
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 14..105 e-value: 1.2E-19 score: 71.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 8..121 e-value: 3.3E-46 score: 159.6
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..355
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR33591:SF1	BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC	coord: 132..335
IPR038938	Beta-carotene isomerase D27-like	PANTHER	PTHR33591	BETA-CAROTENE ISOMERASE D27	coord: 132..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G018210.1	CmoCh02G018210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0016859	cis-trans isomerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046982	protein heterodimerization activity