CmoCh02G018010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G018010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein 16-like
Location	Cmo_Chr02: 10226987 .. 10227723 (-)
RNA-Seq Expression	CmoCh02G018010
Synteny	CmoCh02G018010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCAAAGCCCTTCTCATTAACCTTTAACCCCCACGCCCAACCCTTCGCCTCTGTCCCTAATGGCGTCTTCCACTACAGCCAATTCTCATGCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGAACAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAACGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCAGTTGTCAGTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTATTTGGGAACTTAGATATACCCTAAACCCGATTAATAACCTTAAATGGGGTTTTTATTTTTTGGGTTTTGAAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGGAGATTCAATGGACCGGAATCCCAAAGTTTCCAAGTTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCGACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTAGCACTCAGAATGATGAGAAACTAATTCACTTAATCAAAAG

mRNA sequence

CCACCAAAGCCCTTCTCATTAACCTTTAACCCCCACGCCCAACCCTTCGCCTCTGTCCCTAATGGCGTCTTCCACTACAGCCAATTCTCATGCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGAACAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAACGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCAGTTGTCAGTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGGAGATTCAATGGACCGGAATCCCAAAGTTTCCAAGTTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCGACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTAGCACTCAGAATGATGAGAAACTAATTCACTTAATCAAAAG

Coding sequence (CDS)

ATGGCGTCTTCCACTACAGCCAATTCTCATGCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGAACAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAACGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCAGTTGTCAGTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGGAGATTCAATGGACCGGAATCCCAAAGTTTCCAAGTTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCGACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTAGCACTCAGAATGATGAGAAACTAA

Protein sequence

MASSTTANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHMEIQWTGIPKFPSYQSQVTNSAVSPQTSLESAADNDEAQFQQFPTKIPASCHADVGELQALALRMMRN

Homology

[Close]

BLAST of CmoCh02G018010 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 117/243 (48.15%), Postives = 145/243 (59.67%), Query Frame = 0


Query: 9   SHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLL 68
           S  + + + + SPCGACKFLRRKCA DCIFAPYF SEQ AARFAAIHKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 69  HVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLA----- 128
           +VP+  RCEAVV+IAYEAQAR+ DPVYGCV+H+FALQQQVA+LQ+Q+MQ +AQ+A     
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTS 122

Query: 129 ----------QTHMEIQW--TGIPKF------------PSYQSQVTNSAVSPQTSLESAA 188
                      T+  + W  T +               P Y     N+ VSPQ+SLE + 
Sbjct: 123 AAGDLRHSSESTNQFMTWQQTSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQSSLEESF 182

Query: 189 DNDEAQ--------------------------FQQFPTK--IPASCHADVGELQALALRM 195
            N  +                            + +P K    + C +D+GELQALALRM
Sbjct: 183 SNTSSDVTTTANVRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQALALRM 242

[Close]

BLAST of CmoCh02G018010 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-38
Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 12  SASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVP 71
           ++S+S+S SPCGACKFLRRKCA  C+FAPYFC EQ A+ FAAIHKVFGASN SKLL H+P
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 72  VPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQT 126
           +  RCEA ++I+YEAQAR++DP+YGCV+H+FALQQQV  LQ +L   + Q AQ+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQS 115

[Close]

BLAST of CmoCh02G018010 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 20  SPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPVPHRCEAV 79
           SPCGACKFLRRKC   C+FAPYFC EQ AA FAAIHKVFGASNVSKLL H+P+  R EA 
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 80  VSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQ 125
           V+I+YEAQAR+RDP+YGCVAH+FALQQQV  LQ QL   +A  AQ
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]

BLAST of CmoCh02G018010 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-37
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 13  ASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPV 72
           +S      PCGACKFLRRKC P CIFAPYF SEQ +A FAA+HKVFGASNVSKLLLH+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 73  PHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHM 128
             R +AVV+I YEAQARIRDP+YGCVAH+FALQQQV  LQ ++   +A LA   +
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLEL 143

[Close]

BLAST of CmoCh02G018010 vs. ExPASy Swiss-Prot
Match: O81323 (LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 6   TANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSK 65
           +++ + S+S+     PCGACKFLRRKC   CIFAPYF SEQ AA FAA+HKVFGASNVSK
Sbjct: 2   SSSGNPSSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSK 61

Query: 66  LLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLA 124
           LL HVP   R +AVVSI +EAQAR+RDP+YGCV+H+ +LQQQV  LQT+L   +A LA
Sbjct: 62  LLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLA 119

[Close]

BLAST of CmoCh02G018010 vs. ExPASy TrEMBL
Match: A0A6J1EYR9 (LOB domain-containing protein 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437443 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 4.9e-100
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MASSTTANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGA 60
           MASSTTANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGA
Sbjct: 1   MASSTTANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGA 60

Query: 61  SNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARA 120
           SNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARA
Sbjct: 61  SNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARA 120

Query: 121 QLAQTHMEIQWTGIPKFPSYQSQVTNSAVSPQTSLESAADNDEAQFQQFPTKIPASCHAD 180
           QLAQTHMEIQWTGIPKFPSYQSQVTNSAVSPQTSLESAADNDEAQFQQFPTKIPASCHAD
Sbjct: 121 QLAQTHMEIQWTGIPKFPSYQSQVTNSAVSPQTSLESAADNDEAQFQQFPTKIPASCHAD 180

Query: 181 VGELQALALRMMRN 195
           VGELQALALRMMRN
Sbjct: 181 VGELQALALRMMRN 194

[Close]

BLAST of CmoCh02G018010 vs. ExPASy TrEMBL
Match: A0A6J1K8R5 (LOB domain-containing protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC111491158 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 186/194 (95.88%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MASSTTANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGA 60
           MASSTTANSH  ASASASASPCGACKFLRRKCAPDCIFAPYFCS+QSAARFAAIHKVFGA
Sbjct: 1   MASSTTANSH--ASASASASPCGACKFLRRKCAPDCIFAPYFCSDQSAARFAAIHKVFGA 60

Query: 61  SNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARA 120
           SNVSKLLLHVPVPHRCEAVV+IAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARA
Sbjct: 61  SNVSKLLLHVPVPHRCEAVVTIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARA 120

Query: 121 QLAQTHMEIQWTGIPKFPSYQSQVTNSAVSPQTSLESAADNDEAQFQQFPTKIPASCHAD 180
           QLAQTHM+IQWTGIPKFP+YQSQVTNSAVSPQTSLESAA+NDEAQFQQFPTKIPASCH D
Sbjct: 121 QLAQTHMQIQWTGIPKFPNYQSQVTNSAVSPQTSLESAANNDEAQFQQFPTKIPASCHGD 180

Query: 181 VGELQALALRMMRN 195
           VGELQALALRMMRN
Sbjct: 181 VGELQALALRMMRN 192

[Close]

BLAST of CmoCh02G018010 vs. ExPASy TrEMBL
Match: A0A6J1HWM7 (LOB domain-containing protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC111466950 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.5e-61
Identity = 144/228 (63.16%), Postives = 167/228 (73.25%), Query Frame = 0


Query: 1   MASSTTANSHASASAS-----------ASASPCGACKFLRRKCAPDCIFAPYFCSEQSAA 60
           MASS++++S A++S S              SPCGACKFLRRKC  +CIFAPYF SEQ AA
Sbjct: 1   MASSSSSSSTANSSVSGGGGGGGGGGGGGGSPCGACKFLRRKCVAECIFAPYFSSEQGAA 60

Query: 61  RFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVA 120
           RFAA+HKVFGASNVSKLLLHVPV  RCEAVV+IAYEAQARI DPVYGCVAH+FALQQQVA
Sbjct: 61  RFAAVHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVA 120

Query: 121 YLQTQLMQARAQLAQT------HMEIQWT---------GIPKFPSYQSQVTNSAVSPQTS 180
           YLQ QLMQA+AQLAQT      +ME+QWT         GIP   +Y++Q+ N AVSPQ+S
Sbjct: 121 YLQAQLMQAKAQLAQTLMDSGGNMELQWTGSFNNNLSNGIPS--NYETQIMNPAVSPQSS 180

Query: 181 LESAADNDEA--------QFQQFPTKIPASCHADVGELQALALRMMRN 195
           +ESAA+ND A        + Q    +  ASCH D+GELQALALRMMRN
Sbjct: 181 VESAANNDAALMFMNHYQESQTLARRRSASCHGDLGELQALALRMMRN 226

[Close]

BLAST of CmoCh02G018010 vs. ExPASy TrEMBL
Match: A0A0A0LAE8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G398920 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.0e-60
Identity = 151/240 (62.92%), Postives = 168/240 (70.00%), Query Frame = 0


Query: 2   ASSTTANSH------ASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIH 61
           +SST+ N+        S S     SPCGACKFLRRKC  DCIFAPYFCSEQ AARFAAIH
Sbjct: 4   SSSTSTNTSMSGGGGGSGSGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIH 63

Query: 62  KVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQL 121
           KVFGASNVSKLLLHVPV  RCEAVV+IAYEAQARI DPVYGCVAH+FALQQQVAYLQTQL
Sbjct: 64  KVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQL 123

Query: 122 MQARAQLAQT------HMEIQWTG-----------IPKFPSYQSQVTNSAVSPQTSLESA 181
           M A+AQLA+T      +MEIQWTG           IP   +YQ+Q+TN+  SPQ+SLESA
Sbjct: 124 MHAKAQLAETLMDSGSNMEIQWTGDFNNNNLSNGSIPS-NNYQTQITNNP-SPQSSLESA 183

Query: 182 ADNDEA----------------------QF-QQFP-TKIPASCHADVGELQALALRMMRN 195
           A+NDEA                      QF Q FP  K+P+S HAD+GEL ALALRMMRN
Sbjct: 184 ANNDEALLFINQNQLFHESQLSRSSQEPQFLQPFPRKKLPSSSHADLGELHALALRMMRN 241

[Close]

BLAST of CmoCh02G018010 vs. ExPASy TrEMBL
Match: A0A5D3C536 (LOB domain-containing protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00040 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 148/238 (62.18%), Postives = 167/238 (70.17%), Query Frame = 0


Query: 1   MASSTTANSHASAS----ASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHK 60
           MASS++ +++ S S    +    SPCGACKFLRRKC  DCIFAPYFCSEQ AARFAAIHK
Sbjct: 1   MASSSSTSTNTSVSGCGGSGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHK 60

Query: 61  VFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLM 120
           VFGASNVSKLLLHVPV  RCEAVV+IAYEAQARI DPVYGCVAH+FALQQQVAYLQTQLM
Sbjct: 61  VFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLM 120

Query: 121 QARAQLAQT------HMEIQWTG-----------IPKFPSYQSQVTNSAVSPQTSLESAA 180
           QA+AQLAQT      +MEIQWTG           IP   +YQ+Q+ N+  +PQ+SLESAA
Sbjct: 121 QAKAQLAQTLMDSGSNMEIQWTGDFNNSNLSNGSIPN-NNYQTQIMNNP-TPQSSLESAA 180

Query: 181 DNDEAQ-----------------------FQQFPTKIPASCHADVGELQALALRMMRN 195
           +NDEA                         Q FP K  +S HAD+GEL ALALRMMRN
Sbjct: 181 NNDEALLFINQNQLFHESQLSRSSQEPQILQPFPRKKLSSSHADLGELHALALRMMRN 236

[Close]

BLAST of CmoCh02G018010 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 187.6 bits (475), Expect = 9.6e-48
Identity = 117/243 (48.15%), Postives = 145/243 (59.67%), Query Frame = 0


Query: 9   SHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLL 68
           S  + + + + SPCGACKFLRRKCA DCIFAPYF SEQ AARFAAIHKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 69  HVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLA----- 128
           +VP+  RCEAVV+IAYEAQAR+ DPVYGCV+H+FALQQQVA+LQ+Q+MQ +AQ+A     
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTS 122

Query: 129 ----------QTHMEIQW--TGIPKF------------PSYQSQVTNSAVSPQTSLESAA 188
                      T+  + W  T +               P Y     N+ VSPQ+SLE + 
Sbjct: 123 AAGDLRHSSESTNQFMTWQQTSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQSSLEESF 182

Query: 189 DNDEAQ--------------------------FQQFPTK--IPASCHADVGELQALALRM 195
            N  +                            + +P K    + C +D+GELQALALRM
Sbjct: 183 SNTSSDVTTTANVRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQALALRM 242

[Close]

BLAST of CmoCh02G018010 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 159.5 bits (402), Expect = 2.8e-39
Identity = 76/114 (66.67%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 12  SASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVP 71
           ++S+S+S SPCGACKFLRRKCA  C+FAPYFC EQ A+ FAAIHKVFGASN SKLL H+P
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 72  VPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQT 126
           +  RCEA ++I+YEAQAR++DP+YGCV+H+FALQQQV  LQ +L   + Q AQ+
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQS 115

[Close]

BLAST of CmoCh02G018010 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-38
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 13  ASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPV 72
           +S      PCGACKFLRRKC P CIFAPYF SEQ +A FAA+HKVFGASNVSKLLLH+PV
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 73  PHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHM 128
             R +AVV+I YEAQARIRDP+YGCVAH+FALQQQV  LQ ++   +A LA   +
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLEL 143

[Close]

BLAST of CmoCh02G018010 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 147.9 bits (372), Expect = 8.4e-36
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 6   TANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSK 65
           +++ + S+S+     PCGACKFLRRKC   CIFAPYF SEQ AA FAA+HKVFGASNVSK
Sbjct: 2   SSSGNPSSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSK 61

Query: 66  LLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLA 124
           LL HVP   R +AVVSI +EAQAR+RDP+YGCV+H+ +LQQQV  LQT+L   +A LA
Sbjct: 62  LLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLA 119

[Close]

BLAST of CmoCh02G018010 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-35
Identity = 75/126 (59.52%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 16  SASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPVPHR 75
           + S SPCGACKFLRR+C   C+FAPYFC EQ A+ FAAIH+VFGASN SKLL H+P+  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 76  CEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHMEIQWTGIP 135
            EA  +I YEAQAR +DP+YGCV+H+F+LQQQV  LQTQL   + Q  Q+ M I    I 
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIE 121

Query: 136 KFPSYQ 142
               YQ
Sbjct: 122 NPNYYQ 127

The following BLAST results are available for this feature:

BLAST of CmoCh02G018010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLB7	1.4e-46	48.15	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]
Q9M2J7	3.9e-38	66.67	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q5UG13	2.0e-37	73.33	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
O22131	2.6e-37	67.83	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
O81323	1.2e-34	64.41	LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 S...	[more]

BLAST of CmoCh02G018010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYR9	4.9e-100	100.00	LOB domain-containing protein 16-like OS=Cucurbita moschata OX=3662 GN=LOC111437...	[more]
A0A6J1K8R5	1.6e-95	95.88	LOB domain-containing protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC11149115...	[more]
A0A6J1HWM7	4.5e-61	63.16	LOB domain-containing protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC11146695...	[more]
A0A0A0LAE8	1.0e-60	62.92	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G398920 PE=3 SV...	[more]
A0A5D3C536	1.3e-60	62.18	LOB domain-containing protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CmoCh02G018010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42430.1	9.6e-48	48.15	lateral organ boundaries-domain 16	[more]
AT3G58190.1	2.8e-39	66.67	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.8e-38	67.83	LOB domain-containing protein 18	[more]
AT4G00220.1	8.4e-36	64.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G42440.1	1.9e-35	59.52	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 21..118 e-value: 2.1E-36 score: 124.4
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 20..122 score: 23.159096
None	No IPR available	PANTHER	PTHR31529:SF23	LOB DOMAIN-CONTAINING PROTEIN 16	coord: 13..193
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 13..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G018010.1	CmoCh02G018010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus