CmoCh02G017190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	Cmo_Chr02: 9837805 .. 9838847 (-)
RNA-Seq Expression	CmoCh02G017190
Synteny	CmoCh02G017190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATGGTAGGTAATGATCATATATGGTTCATACATTAGAGCTATCTCAAGCACGTAGAAGTGAGGATTTAAAATCTTGAACATTTTGGTTGATAGTGTAGGTGAGATCCCACGTTGGTTGGTTGGTTGGGGAGGGTGAAACATTTTTTTATAAGAGTGTGGAAACCTCTCCCTACTAGATGCGTTCTAGAAACTTTGAGGAAAAATGACAATATGTTCTAGCGGTGGACTTGGGCTATTAGAGCATATGTCTGAACTAGAACTAGAACTAGATGAATTAATGTTCAAATTGACATAGCTATCTTTCTTTGTTCATAATCGATACGGAACTGAAATGGTTGCAAACTAACCAAAGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATAATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGAGATTACTGAGATTTGATAATGCAAATGTCTTACATTCTTCTGTTCTTCCTCAAAATTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGCAAATGATATTGTTCTTTGCATTTTCCACGTGAGATTACTTAGATTGCATGAACATGTGAGAATAATGTAGATTATTTCATGGATCTGGCTGCAGCTCACCTCCTTCAATGCCATCTGATTGAAAGTGTTTGTCTGTGGCCAAAGTTGTAAGCAAAGACAAAATTTGATTGTGTTGTTTGGGGTTTACAATTTTTTCTTATTTCGAGATTCATCTGTTGGATATCTATTCTTCATTTTAATAACTGTACTGTGATTTTGGTGTTATGTGTTCTTATTTAATGTTGTAATGTAATGTGTTCTTATTTAATGTTGTA

mRNA sequence

ATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATAATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGAGATTACTGAGATTTGATAATGCAAATGTCTTACATTCTTCTGTTCTTCCTCAAAATTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGCAAATGATATTGTTCTTTGCATTTTCCACGTGAGATTACTTAGATTGCATGAACATGTGAGAATAATGTAGATTATTTCATGGATCTGGCTGCAGCTCACCTCCTTCAATGCCATCTGATTGAAAGTGTTTGTCTGTGGCCAAAGTTGTAAGCAAAGACAAAATTTGATTGTGTTGTTTGGGGTTTACAATTTTTTCTTATTTCGAGATTCATCTGTTGGATATCTATTCTTCATTTTAATAACTGTACTGTGATTTTGGTGTTATGTGTTCTTATTTAATGTTGTAATGTAATGTGTTCTTATTTAATGTTGTA

Coding sequence (CDS)

ATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATAATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGA

Protein sequence

MDMDDIDSYSKTYICGASFRSMDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNNEQNQKVIEELSSISQPTT

Homology

[Close]

BLAST of CmoCh02G017190 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 21  SMDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN 79
           S +K   VPKFG+W++ + +  D YT IF KVREER         +RTPT  Q+S  P+N
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPT-HQSSRNPNN 200

[Close]

BLAST of CmoCh02G017190 vs. ExPASy TrEMBL
Match: A0A0A0L950 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G630240 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-10
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 23 DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNNEQN 82
          D E AVPKFGEW+D DA  P+NYTAIF KVREERQDQ  R TPT   +S   ++QN+EQN
Sbjct: 3  DNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLIDST--NSQNHEQN 62

Query: 83 QKVIEEL 89
          QK+ +++
Sbjct: 63 QKLGQKI 67

[Close]

BLAST of CmoCh02G017190 vs. ExPASy TrEMBL
Match: W1NM34 (AvrRpt-cleavage domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00074p00139690 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.6e-05
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 22  MDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLP 68
           ++   AVPKFG W+DRD T  D +T +F KV+EERQ + A+ P +P
Sbjct: 188 LESVAAVPKFGAWDDRDPTSGDGFTVLFNKVKEERQIRAAKPPVIP 233

[Close]

BLAST of CmoCh02G017190 vs. ExPASy TrEMBL
Match: A0A067JR54 (AvrRpt-cleavage domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_17520 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.6e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 21  SMDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNI 73
           S DK  AVPKFGEW++ +    D YT IF KVREERQ    + P +P  S++
Sbjct: 204 SPDKGAAVPKFGEWDENNPASADGYTHIFNKVREERQVGAGKVPGMPTESSM 255

[Close]

BLAST of CmoCh02G017190 vs. ExPASy TrEMBL
Match: A0A6A6KUD7 (AvrRpt-cleavage domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_025813 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.6e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 21  SMDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNI 73
           S DK  AVPKFGEW++ +    D YT IF KVREERQ    + P +P  S++
Sbjct: 204 SPDKGAAVPKFGEWDENNPASADGYTHIFNKVREERQIGAGKVPGMPTESSM 255

[Close]

BLAST of CmoCh02G017190 vs. ExPASy TrEMBL
Match: A0A6A6K948 (AvrRpt-cleavage domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026145 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 23 DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQ 77
          DK  AVPKFGEW++ +    D YT IF KVREERQ +  + P +P  S++ + +
Sbjct: 36 DKGAAVPKFGEWDENNPASADGYTHIFNKVREERQIEAGKVPGMPTESSMSNTR 89

[Close]

BLAST of CmoCh02G017190 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 21  SMDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN 79
           S +K   VPKFG+W++ + +  D YT IF KVREER         +RTPT  Q+S  P+N
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPT-HQSSRNPNN 200

The following BLAST results are available for this feature:

BLAST of CmoCh02G017190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	1.4e-04	42.86	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of CmoCh02G017190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L950	3.0e-10	61.19	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G63...	[more]
W1NM34	6.6e-05	50.00	AvrRpt-cleavage domain-containing protein OS=Amborella trichopoda OX=13333 GN=AM...	[more]
A0A067JR54	8.6e-05	50.00	AvrRpt-cleavage domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_1...	[more]
A0A6A6KUD7	8.6e-05	50.00	AvrRpt-cleavage domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714...	[more]
A0A6A6K948	1.1e-04	46.30	AvrRpt-cleavage domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714...	[more]

BLAST of CmoCh02G017190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	1.0e-05	42.86	RPM1 interacting protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 23..57 e-value: 2.8E-13 score: 48.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..96
None	No IPR available	PANTHER	PTHR33159:SF26	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 21..82
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 21..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017190.1	CmoCh02G017190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane