CmoCh02G016760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G016760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Homeodomain-like superfamily protein
Location	Cmo_Chr02: 9621080 .. 9621909 (+)
RNA-Seq Expression	CmoCh02G016760
Synteny	CmoCh02G016760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTATTCCCTGCACAGCCGGATTTGTCGCTCCAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAACAACAACACCCTCTCAAGAACATCTTGATTTGGGGTTTTGGAATAATCTCAATTTGGAGTCTGCTAAACCCACTCCCAAACATCACCCTACTAATCAACACTTTGATCTCTCCCTTTCCAACTTCACTCAAATTAACCAATACTCCAATATTCCTCCTCCTCCGCCTCCTCCTCTTCCTCACCACCACCACCACCCTGCCTTCCACGGCGGCGCTCACCTCTTCCAAACCCTACACAAAACCCATCACCCACCCACCATTTTCCACCACACTCCTCCGCCACCACCCACCACATCGCACCCTTTTCCAGGACAGAACAATGTTCAAGACTTGGCCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCACTCCCTCCCCCATCGCTCCCTCCGCCAGCGGCCACGGCCAGATAATGATGCGATCCAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGCGATGGACTTCCACTCTCCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGTATTCACTTTTCCTTTACCCTCAAAACCATATTACTTTTCCCGTGATGGGTTACGATAAATTTAATTATTTCTTTACATTTTGGCTACCAGGAGCGACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGGTATGCAACTCATAA

mRNA sequence

ATGGAGCTATTCCCTGCACAGCCGGATTTGTCGCTCCAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAACAACAACACCCTCTCAAGAACATCTTGATTTGGGGTTTTGGAATAATCTCAATTTGGAGTCTGCTAAACCCACTCCCAAACATCACCCTACTAATCAACACTTTGATCTCTCCCTTTCCAACTTCACTCAAATTAACCAATACTCCAATATTCCTCCTCCTCCGCCTCCTCCTCTTCCTCACCACCACCACCACCCTGCCTTCCACGGCGGCGCTCACCTCTTCCAAACCCTACACAAAACCCATCACCCACCCACCATTTTCCACCACACTCCTCCGCCACCACCCACCACATCGCACCCTTTTCCAGGACAGAACAATGTTCAAGACTTGGCCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCACTCCCTCCCCCATCGCTCCCTCCGCCAGCGGCCACGGCCAGATAATGATGCGATCCAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGCGATGGACTTCCACTCTCCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGAGCGACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGGTATGCAACTCATAA

Coding sequence (CDS)

ATGGAGCTATTCCCTGCACAGCCGGATTTGTCGCTCCAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAACAACAACACCCTCTCAAGAACATCTTGATTTGGGGTTTTGGAATAATCTCAATTTGGAGTCTGCTAAACCCACTCCCAAACATCACCCTACTAATCAACACTTTGATCTCTCCCTTTCCAACTTCACTCAAATTAACCAATACTCCAATATTCCTCCTCCTCCGCCTCCTCCTCTTCCTCACCACCACCACCACCCTGCCTTCCACGGCGGCGCTCACCTCTTCCAAACCCTACACAAAACCCATCACCCACCCACCATTTTCCACCACACTCCTCCGCCACCACCCACCACATCGCACCCTTTTCCAGGACAGAACAATGTTCAAGACTTGGCCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCACTCCCTCCCCCATCGCTCCCTCCGCCAGCGGCCACGGCCAGATAATGATGCGATCCAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGCGATGGACTTCCACTCTCCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGAGCGACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGGTATGCAACTCATAA

Protein sequence

MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQHFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPPPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVCNS

Homology

[Close]

BLAST of CmoCh02G016760 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-45
Identity = 135/297 (45.45%), Postives = 157/297 (52.86%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTW---RTTTPSQEH--LDLGFWNNLNLESAKPTPKH 60
           MELFPAQPDLSLQISPPN +KPSSTW   R+TT  ++H  LDLGFW    L+S   +   
Sbjct: 1   MELFPAQPDLSLQISPPN-SKPSSTWQRRRSTTDQEDHEELDLGFWRRA-LDSRTSSLVS 60

Query: 61  HPTNQHF-----DLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHH 120
           + T++       DLSLSN +                  HH                + HH
Sbjct: 61  NSTSKTINHPFQDLSLSNIS------------------HHQQ-------------QQQHH 120

Query: 121 PPTIFHHTPPPPPTTSHPFPGQNNVQDL---------AFLRPIRGIPVYHQTT---NPAG 180
            P +  +       TS  FP Q   Q L           LRPIRGIP+YH      +P  
Sbjct: 121 HPQLLPNCNSSNILTSFQFPTQQQQQHLQGFLAHDLNTHLRPIRGIPLYHNPPPHHHPHR 180

Query: 181 TPSP--------IAPSAS-------------------------GHGQIMMRSRFLSRFPA 240
            P P        + PS+S                          H Q + R+RF+ RFPA
Sbjct: 181 PPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRARFMPRFPA 240

Query: 241 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 243
           KRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ+
Sbjct: 241 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 264

[Close]

BLAST of CmoCh02G016760 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-28
Identity = 87/190 (45.79%), Postives = 102/190 (53.68%), Query Frame = 0


Query: 79  PPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPPPP-------------PTT 138
           P P    + HHHHH       H     + ++H P+ +  T P P             PT 
Sbjct: 194 PSPTAGDVGHHHHH-------HPKMGFYSSYHHPSTWPSTSPSPLAAPPGAASSPLDPTA 253

Query: 139 SHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASG---------HGQI--- 198
           +      + +   A  R + G+     T    G P   AP   G         HG     
Sbjct: 254 AFLSSPHHRMLSAASGR-LNGMLSVSDTLRSYGVPGAAAPGVIGGAHHHHHHLHGGQPFV 313

Query: 199 -MMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 243
             + SRF+ + PAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct: 314 GALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 373

[Close]

BLAST of CmoCh02G016760 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-27
Identity = 103/270 (38.15%), Postives = 141/270 (52.22%), Query Frame = 0


Query: 8   PDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ--HFDLS 67
           PDLSL IS P+ +            Q H      N  + ES++ + +    N+  +F+LS
Sbjct: 20  PDLSLHISLPDIH------------QYH-----HNESSKESSRRSSQLENNNRSSNFELS 79

Query: 68  LSNFTQ-INQYSNIPPPPPPPLPH--HHHHPAFHG-----GAHLFQTLHKTHHPPTIFHH 127
           LS+      +  + P      LPH  H+++P  +G            LH+      ++H+
Sbjct: 80  LSHHNHPTARIFHCPDRRTLNLPHQQHYNNPIINGVHQRVDESEISNLHRPIRGIPVYHN 139

Query: 128 TPPP--PPTTSHPFPGQNNVQDLAFLRP----------------IRGIPVYHQ------- 187
              P     +S P  G  ++  ++ L                  ++G+P++H        
Sbjct: 140 RSFPFHQQNSSLPSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYG 199

Query: 188 TTNPAGTPSPIAPSASGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLG 243
               + + SP   +   HG  M+RSRFL + P KRSMRAPRMRWTS+LHARFVHAVELLG
Sbjct: 200 VVGSSDSSSPHHHNHHHHG--MIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLG 259

[Close]

BLAST of CmoCh02G016760 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-24
Identity = 66/133 (49.62%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 134 NVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPS----ASGHGQIMMRSRFLS-------- 193
           +++ +  +RPIRGIP+Y          S  +P+    +  +GQ   R    +        
Sbjct: 83  DLRSIFMMRPIRGIPLYQNQVLDHYYYSSTSPNPFFFSEVNGQHASRRLITNPNCSFNLH 142

Query: 194 ------------RFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVK 243
                       RF AKR +RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELMDV+
Sbjct: 143 NRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQ 202

[Close]

BLAST of CmoCh02G016760 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-23
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 186 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 243
           KRS+RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ+
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

[Close]

BLAST of CmoCh02G016760 vs. ExPASy TrEMBL
Match: A0A6J1ETP5 (probable transcription factor KAN2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437460 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.4e-139
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60
           MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ
Sbjct: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60

Query: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP 120
           HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP
Sbjct: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP 120

Query: 121 PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL 180
           PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL
Sbjct: 121 PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL 180

Query: 181 SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 240
           SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL
Sbjct: 181 SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 240

Query: 241 QV 243
           Q+
Sbjct: 241 QM 242

[Close]

BLAST of CmoCh02G016760 vs. ExPASy TrEMBL
Match: A0A6J1EYU6 (probable transcription factor KAN2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437460 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.4e-139
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60
           MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ
Sbjct: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60

Query: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP 120
           HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP
Sbjct: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP 120

Query: 121 PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL 180
           PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL
Sbjct: 121 PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL 180

Query: 181 SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 240
           SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL
Sbjct: 181 SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 240

Query: 241 QV 243
           Q+
Sbjct: 241 QM 242

[Close]

BLAST of CmoCh02G016760 vs. ExPASy TrEMBL
Match: A0A6J1ET31 (probable transcription factor KAN2 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111437460 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 1.4e-139
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60
           MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ
Sbjct: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60

Query: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP 120
           HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP
Sbjct: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPP 120

Query: 121 PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL 180
           PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL
Sbjct: 121 PPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFL 180

Query: 181 SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 240
           SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL
Sbjct: 181 SRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHL 240

Query: 241 QV 243
           Q+
Sbjct: 241 QM 242

[Close]

BLAST of CmoCh02G016760 vs. ExPASy TrEMBL
Match: A0A6J1K7V2 (probable transcription factor KAN2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491441 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 8.6e-134
Identity = 237/243 (97.53%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60
           MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTN 
Sbjct: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNH 60

Query: 61  HFDLSLSNFTQINQYSNIPPPPPPPLP-HHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTP 120
           HFDLSLSNFTQINQYSNIPPPPPPPLP  HHHHPA HGGAHLFQTLHKTHHPPTIFHHT 
Sbjct: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPLPHHHHPALHGGAHLFQTLHKTHHPPTIFHHT- 120

Query: 121 PPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRF 180
           PPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRF
Sbjct: 121 PPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRF 180

Query: 181 LSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 240
           LSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH
Sbjct: 181 LSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 240

Query: 241 LQV 243
           LQ+
Sbjct: 241 LQM 242

[Close]

BLAST of CmoCh02G016760 vs. ExPASy TrEMBL
Match: A0A6J1K5V7 (probable transcription factor KAN2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111491441 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 8.6e-134
Identity = 237/243 (97.53%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ 60
           MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTN 
Sbjct: 1   MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNH 60

Query: 61  HFDLSLSNFTQINQYSNIPPPPPPPLP-HHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTP 120
           HFDLSLSNFTQINQYSNIPPPPPPPLP  HHHHPA HGGAHLFQTLHKTHHPPTIFHHT 
Sbjct: 61  HFDLSLSNFTQINQYSNIPPPPPPPLPLPHHHHPALHGGAHLFQTLHKTHHPPTIFHHT- 120

Query: 121 PPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRF 180
           PPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRF
Sbjct: 121 PPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRF 180

Query: 181 LSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 240
           LSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH
Sbjct: 181 LSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSH 240

Query: 241 LQV 243
           LQ+
Sbjct: 241 LQM 242

[Close]

BLAST of CmoCh02G016760 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 184.9 bits (468), Expect = 7.9e-47
Identity = 135/297 (45.45%), Postives = 157/297 (52.86%), Query Frame = 0


Query: 1   MELFPAQPDLSLQISPPNTNKPSSTW---RTTTPSQEH--LDLGFWNNLNLESAKPTPKH 60
           MELFPAQPDLSLQISPPN +KPSSTW   R+TT  ++H  LDLGFW    L+S   +   
Sbjct: 1   MELFPAQPDLSLQISPPN-SKPSSTWQRRRSTTDQEDHEELDLGFWRRA-LDSRTSSLVS 60

Query: 61  HPTNQHF-----DLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHH 120
           + T++       DLSLSN +                  HH                + HH
Sbjct: 61  NSTSKTINHPFQDLSLSNIS------------------HHQQ-------------QQQHH 120

Query: 121 PPTIFHHTPPPPPTTSHPFPGQNNVQDL---------AFLRPIRGIPVYHQTT---NPAG 180
            P +  +       TS  FP Q   Q L           LRPIRGIP+YH      +P  
Sbjct: 121 HPQLLPNCNSSNILTSFQFPTQQQQQHLQGFLAHDLNTHLRPIRGIPLYHNPPPHHHPHR 180

Query: 181 TPSP--------IAPSAS-------------------------GHGQIMMRSRFLSRFPA 240
            P P        + PS+S                          H Q + R+RF+ RFPA
Sbjct: 181 PPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRARFMPRFPA 240

Query: 241 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 243
           KRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ+
Sbjct: 241 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 264

[Close]

BLAST of CmoCh02G016760 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-29
Identity = 103/270 (38.15%), Postives = 141/270 (52.22%), Query Frame = 0


Query: 8   PDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQ--HFDLS 67
           PDLSL IS P+ +            Q H      N  + ES++ + +    N+  +F+LS
Sbjct: 20  PDLSLHISLPDIH------------QYH-----HNESSKESSRRSSQLENNNRSSNFELS 79

Query: 68  LSNFTQ-INQYSNIPPPPPPPLPH--HHHHPAFHG-----GAHLFQTLHKTHHPPTIFHH 127
           LS+      +  + P      LPH  H+++P  +G            LH+      ++H+
Sbjct: 80  LSHHNHPTARIFHCPDRRTLNLPHQQHYNNPIINGVHQRVDESEISNLHRPIRGIPVYHN 139

Query: 128 TPPP--PPTTSHPFPGQNNVQDLAFLRP----------------IRGIPVYHQ------- 187
              P     +S P  G  ++  ++ L                  ++G+P++H        
Sbjct: 140 RSFPFHQQNSSLPSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYG 199

Query: 188 TTNPAGTPSPIAPSASGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLG 243
               + + SP   +   HG  M+RSRFL + P KRSMRAPRMRWTS+LHARFVHAVELLG
Sbjct: 200 VVGSSDSSSPHHHNHHHHG--MIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLG 259

[Close]

BLAST of CmoCh02G016760 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-26
Identity = 66/133 (49.62%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 134 NVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPS----ASGHGQIMMRSRFLS-------- 193
           +++ +  +RPIRGIP+Y          S  +P+    +  +GQ   R    +        
Sbjct: 83  DLRSIFMMRPIRGIPLYQNQVLDHYYYSSTSPNPFFFSEVNGQHASRRLITNPNCSFNLH 142

Query: 194 ------------RFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVK 243
                       RF AKR +RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELMDV+
Sbjct: 143 NRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQ 202

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BLAST of CmoCh02G016760 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 5.5e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 186 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 243
           KRS+RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ+
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

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BLAST of CmoCh02G016760 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 5.5e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 186 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 243
           KRS+RAPRMRWTSTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ+
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156

The following BLAST results are available for this feature:

BLAST of CmoCh02G016760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C616	1.1e-45	45.45	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q0J235	2.7e-28	45.79	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q93WJ9	1.0e-27	38.15	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
Q941I2	1.1e-24	49.62	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
Q9FJV5	7.7e-23	91.23	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]

BLAST of CmoCh02G016760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETP5	1.4e-139	99.59	probable transcription factor KAN2 isoform X1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1EYU6	1.4e-139	99.59	probable transcription factor KAN2 isoform X2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ET31	1.4e-139	99.59	probable transcription factor KAN2 isoform X3 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1K7V2	8.6e-134	97.53	probable transcription factor KAN2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1K5V7	8.6e-134	97.53	probable transcription factor KAN2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CmoCh02G016760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32240.1	7.9e-47	45.45	Homeodomain-like superfamily protein	[more]
AT5G16560.1	7.4e-29	38.15	Homeodomain-like superfamily protein	[more]
AT4G17695.1	7.6e-26	49.62	Homeodomain-like superfamily protein	[more]
AT5G42630.1	5.5e-24	91.23	Homeodomain-like superfamily protein	[more]
AT5G42630.2	5.5e-24	91.23	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 191..245 e-value: 5.1E-24 score: 86.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..134
None	No IPR available	PANTHER	PTHR31496:SF24	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 1..242
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 192..242 e-value: 1.1E-21 score: 74.8
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 1..242
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 189..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G016760.1	CmoCh02G016760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding