CmoCh02G016430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G016430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein ABCI7, chloroplastic-like
Location	Cmo_Chr02: 9474423 .. 9474952 (-)
RNA-Seq Expression	CmoCh02G016430
Synteny	CmoCh02G016430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGAACAAAAGACAAGACGCTTAAAATGGTAGTTCTACTAGGAAAGCTTAGTATCTTGAAAGTTCTGTTGGAGGCAAGTATTGGTAGGATGGCAAAACTTAATGACCACCTTTGTCGCACGCGTTTTATATCACACATTTCATTCTTGTCTTGGTAACTACTACTGTATCATGTGGTGGTTGTTTAATTCTAGAACATGATTTCTCCAGATACGCACAGCAAACAGATGCAGGACAACTAACAAGGAGTCTTCTTCTGGAACCTCGAGCCACCGTGAATGTGAAACCGAATCTTCAAATCATCGCAGACGATGTCAAATGCTCACATGGAGCTGCTATAAGCGACCTGGAGGAAACCCAACTCTTCTATTTTCAGGCTCGTGGCATTGACTTAGAGACAGCGAGAAAGGCTCTGATATTTTCATTCGGAGCCGAGGTGATCGAACGGCTGCCTTCCGCTTCAGTCCGCAAGAGGGTCGAGAATCATATAAAAGACTTGTTGAATCCCACGCTTGAAAGATCCTAA

mRNA sequence

ATGCCAAGAACAAAAGACAAGACGCTTAAAATGGTAGTTCTACTAGGAAAGCTTAGTATCTTGAAAGTTCTGTTGGAGGCAAGTATTGGTAGGATGGCAAAACTTAATGACCACCTTTGTCGCACGCAACATGATTTCTCCAGATACGCACAGCAAACAGATGCAGGACAACTAACAAGGAGTCTTCTTCTGGAACCTCGAGCCACCGTGAATGTGAAACCGAATCTTCAAATCATCGCAGACGATGTCAAATGCTCACATGGAGCTGCTATAAGCGACCTGGAGGAAACCCAACTCTTCTATTTTCAGGCTCGTGGCATTGACTTAGAGACAGCGAGAAAGGCTCTGATATTTTCATTCGGAGCCGAGGTGATCGAACGGCTGCCTTCCGCTTCAGTCCGCAAGAGGGTCGAGAATCATATAAAAGACTTGTTGAATCCCACGCTTGAAAGATCCTAA

Coding sequence (CDS)

ATGCCAAGAACAAAAGACAAGACGCTTAAAATGGTAGTTCTACTAGGAAAGCTTAGTATCTTGAAAGTTCTGTTGGAGGCAAGTATTGGTAGGATGGCAAAACTTAATGACCACCTTTGTCGCACGCAACATGATTTCTCCAGATACGCACAGCAAACAGATGCAGGACAACTAACAAGGAGTCTTCTTCTGGAACCTCGAGCCACCGTGAATGTGAAACCGAATCTTCAAATCATCGCAGACGATGTCAAATGCTCACATGGAGCTGCTATAAGCGACCTGGAGGAAACCCAACTCTTCTATTTTCAGGCTCGTGGCATTGACTTAGAGACAGCGAGAAAGGCTCTGATATTTTCATTCGGAGCCGAGGTGATCGAACGGCTGCCTTCCGCTTCAGTCCGCAAGAGGGTCGAGAATCATATAAAAGACTTGTTGAATCCCACGCTTGAAAGATCCTAA

Protein sequence

MPRTKDKTLKMVVLLGKLSILKVLLEASIGRMAKLNDHLCRTQHDFSRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS

Homology

[Close]

BLAST of CmoCh02G016430 vs. ExPASy Swiss-Prot
Match: Q9LQK7 (Protein ABCI7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI7 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 22  KVLLEASIGRMAKLNDHLCRTQHD-----------FSRYAQQTDAGQLTRSLLLEPRATV 81
           K++L+   G   +L  H C   H             +R+AQQT+AGQLTRSLLL+PRATV
Sbjct: 343 KIILDHPRGASRQL--HKCIVAHSSGQAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATV 402

Query: 82  NVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSFGAEVIERLPS 141
           N+KPNLQIIADDVKCSHGAAISDLEE QLFYFQARGIDLETAR+ALI SFG+EVIE+ P+
Sbjct: 403 NIKPNLQIIADDVKCSHGAAISDLEEDQLFYFQARGIDLETARRALISSFGSEVIEKFPN 462

Query: 142 ASVRKRVENHIKDLL 146
             +R +  NH+K LL
Sbjct: 463 REIRDQARNHVKGLL 475

[Close]

BLAST of CmoCh02G016430 vs. ExPASy Swiss-Prot
Match: Q55792 (UPF0051 protein slr0076 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0076 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-17
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 50  AQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDL 109
           AQ T+A QL R+L+L  +A +N KP LQI AD+VKCSHGA IS LE  ++FY ++RG++ 
Sbjct: 357 AQLTNAQQLNRNLVLSSKARINTKPELQITADNVKCSHGATISQLEADEVFYLRSRGLND 416

Query: 110 ETARKALIFSFGAEVIERLPSASVRKRV 138
             AR  LI +F  E+++++P AS++ R+
Sbjct: 417 YDARHLLIDAFAGEILDQIPLASLQGRL 444

[Close]

BLAST of CmoCh02G016430 vs. ExPASy Swiss-Prot
Match: P77689 (FeS cluster assembly protein SufD OS=Escherichia coli (strain K12) OX=83333 GN=sufD PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-14
Identity = 35/91 (38.46%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 47  SRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 106
           +++A +TD      +LL+   A V+ KP L+I ADDVKCSHGA +  +++ Q+FY ++RG
Sbjct: 320 AQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRG 379

Query: 107 IDLETARKALIFSFGAEVIERLPSASVRKRV 138
           I+ + A++ +I++F AE+ E L    ++++V
Sbjct: 380 INQQDAQQMIIYAFAAELTEALRDEGLKQQV 410

[Close]

BLAST of CmoCh02G016430 vs. ExPASy Swiss-Prot
Match: Q9ZS97 (UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI8 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-07
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 61  SLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSF 120
           S+L+  +A  N  P +Q+     K  H A+ S + E QLFYFQ RGID E A  A+I  F
Sbjct: 469 SMLIGDKAAANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGF 528

Query: 121 GAEVIERLP 130
             +V  +LP
Sbjct: 529 CRDVFNKLP 537

[Close]

BLAST of CmoCh02G016430 vs. ExPASy Swiss-Prot
Match: Q3E8H7 (Putative UPF0051 protein ABCI9 OS=Arabidopsis thaliana OX=3702 GN=ABCI9 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 61  SLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSF 120
           S+L+   A  N  P +Q+     +  H A+ S + E Q+FYFQ RGID E A  A+I  F
Sbjct: 382 SMLIGDNAAANTYPYIQVKNPSARIEHEASTSKIGEDQIFYFQQRGIDHERALAAMISGF 441

Query: 121 GAEVIERLPS 131
             +V  +LP+
Sbjct: 442 CRDVFNKLPN 451

[Close]

BLAST of CmoCh02G016430 vs. ExPASy TrEMBL
Match: A0A6J1K7C3 (protein ABCI7, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491319 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 47  SRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 106
           +RYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG
Sbjct: 389 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 448

Query: 107 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 153
           IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS
Sbjct: 449 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 494

[Close]

BLAST of CmoCh02G016430 vs. ExPASy TrEMBL
Match: A0A6J1ES56 (protein ABCI7, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437297 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 47  SRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 106
           +RYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG
Sbjct: 432 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 491

Query: 107 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 153
           IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS
Sbjct: 492 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 537

[Close]

BLAST of CmoCh02G016430 vs. ExPASy TrEMBL
Match: A0A0A0LEE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G903500 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.5e-48
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 47  SRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 106
           +RYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG
Sbjct: 391 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 450

Query: 107 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 153
           IDLETARKALIFSFGAEVIERLPS SVRKRVENHIK+LLNPTLERS
Sbjct: 451 IDLETARKALIFSFGAEVIERLPSPSVRKRVENHIKELLNPTLERS 496

[Close]

BLAST of CmoCh02G016430 vs. ExPASy TrEMBL
Match: A0A5D3E5C0 (Protein ABCI7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004240 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.8e-47
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 47  SRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 106
           +RYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG
Sbjct: 398 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 457

Query: 107 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 153
           IDLETARKALIFSFGAEVIERLP  SVRKRVENHIK+LLNP LERS
Sbjct: 458 IDLETARKALIFSFGAEVIERLPFPSVRKRVENHIKELLNPKLERS 503

[Close]

BLAST of CmoCh02G016430 vs. ExPASy TrEMBL
Match: A0A1S3CQ30 (protein ABCI7, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103503519 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.8e-47
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 47  SRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 106
           +RYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG
Sbjct: 398 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARG 457

Query: 107 IDLETARKALIFSFGAEVIERLPSASVRKRVENHIKDLLNPTLERS 153
           IDLETARKALIFSFGAEVIERLP  SVRKRVENHIK+LLNP LERS
Sbjct: 458 IDLETARKALIFSFGAEVIERLPFPSVRKRVENHIKELLNPKLERS 503

[Close]

BLAST of CmoCh02G016430 vs. TAIR 10
Match: AT1G32500.1 (non-intrinsic ABC protein 6 )

HSP 1 Score: 161.0 bits (406), Expect = 7.5e-40
Identity = 85/135 (62.96%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 22  KVLLEASIGRMAKLNDHLCRTQHD-----------FSRYAQQTDAGQLTRSLLLEPRATV 81
           K++L+   G   +L  H C   H             +R+AQQT+AGQLTRSLLL+PRATV
Sbjct: 343 KIILDHPRGASRQL--HKCIVAHSSGQAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATV 402

Query: 82  NVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSFGAEVIERLPS 141
           N+KPNLQIIADDVKCSHGAAISDLEE QLFYFQARGIDLETAR+ALI SFG+EVIE+ P+
Sbjct: 403 NIKPNLQIIADDVKCSHGAAISDLEEDQLFYFQARGIDLETARRALISSFGSEVIEKFPN 462

Query: 142 ASVRKRVENHIKDLL 146
             +R +  NH+K LL
Sbjct: 463 REIRDQARNHVKGLL 475

[Close]

BLAST of CmoCh02G016430 vs. TAIR 10
Match: AT4G04770.1 (ATP binding cassette protein 1 )

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 61  SLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSF 120
           S+L+  +A  N  P +Q+     K  H A+ S + E QLFYFQ RGID E A  A+I  F
Sbjct: 469 SMLIGDKAAANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGF 528

Query: 121 GAEVIERLP 130
             +V  +LP
Sbjct: 529 CRDVFNKLP 537

[Close]

BLAST of CmoCh02G016430 vs. TAIR 10
Match: AT5G44316.1 (Stabilizer of iron transporter SufD superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 9.9e-08
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 61  SLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALIFSF 120
           S+L+   A  N  P +Q+     +  H A+ S + E Q+FYFQ RGID E A  A+I  F
Sbjct: 382 SMLIGDNAAANTYPYIQVKNPSARIEHEASTSKIGEDQIFYFQQRGIDHERALAAMISGF 441

Query: 121 GAEVIERLPS 131
             +V  +LP+
Sbjct: 442 CRDVFNKLPN 451

The following BLAST results are available for this feature:

BLAST of CmoCh02G016430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQK7	1.1e-38	62.96	Protein ABCI7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI7 PE=1 SV=1	[more]
Q55792	3.0e-17	48.86	UPF0051 protein slr0076 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=11117...	[more]
P77689	5.3e-14	38.46	FeS cluster assembly protein SufD OS=Escherichia coli (strain K12) OX=83333 GN=s...	[more]
Q9ZS97	2.8e-07	42.03	UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI8 PE...	[more]
Q3E8H7	1.4e-06	38.57	Putative UPF0051 protein ABCI9 OS=Arabidopsis thaliana OX=3702 GN=ABCI9 PE=3 SV=...	[more]

BLAST of CmoCh02G016430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7C3	1.4e-49	99.06	protein ABCI7, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111491319 PE...	[more]
A0A6J1ES56	1.4e-49	99.06	protein ABCI7, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437297 ...	[more]
A0A0A0LEE9	1.5e-48	97.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G903500 PE=4 SV=1	[more]
A0A5D3E5C0	3.8e-47	95.28	Protein ABCI7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004240...	[more]
A0A1S3CQ30	3.8e-47	95.28	protein ABCI7, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103503519 PE=4 S...	[more]

BLAST of CmoCh02G016430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32500.1	7.5e-40	62.96	non-intrinsic ABC protein 6	[more]
AT4G04770.1	2.0e-08	42.03	ATP binding cassette protein 1	[more]
AT5G44316.1	9.9e-08	38.57	Stabilizer of iron transporter SufD superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000825	SUF system FeS cluster assembly, SufBD	PFAM	PF01458	SUFBD	coord: 45..120 e-value: 4.1E-26 score: 92.0
IPR011542	SUF system FeS cluster assembly, SufD	PANTHER	PTHR43575	PROTEIN ABCI7, CHLOROPLASTIC	coord: 47..148
IPR037284	SUF system FeS cluster assembly, SufBD superfamily	SUPERFAMILY	101960	Stabilizer of iron transporter SufD	coord: 47..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G016430.1	CmoCh02G016430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly