CmoCh02G016120 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G016120
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionAcyl-CoA synthetase/AMP-acid ligaseII
LocationCmo_Chr02: 9271684 .. 9272308 (+)
RNA-Seq ExpressionCmoCh02G016120
SyntenyCmoCh02G016120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACATTGTTTCTCACAGAACAAACAACTGGGTTGTCCCACTGCAGAGCCGATCCAACCACATTGGCTCGAACGGTGAGCGGGAACACTCGAGGCCATCTTTCGGTTCCATACGACCTCAGAGCTTCTTCAACAGAAGGTGCTTCCGACTTGAGTGCAGTGGCCAGTTTTCTTGCTAGAACCACTGCATCTTCTAATGCACAGCATGCTCCTTGTCCTAGATTTGGAGTCATCGGATGCCAGGCATCTCCAACCAGGACCACTCTTCCCGATGAAGCGGGCGGGCTGACTGCAGGCCAAAGCCATCGGTCTACGAGGGGTGTTCGGATTAACGTGTCCTCCGGGGTTGTGTCCATGATGTTTAGTAGCTCAGATGGCCAGTTTTTTACCAGTTCTTTCGCTTGCTGCTTTAGAACAGCTGGATCTGTGATTTTTGGTCCTGCAATGTGAGACACCACCAATTTTGATCTGAGTTTAATATGTCGACCCTATCGATCGGATACCGAAAATATGGTAACTTTTAACAGATAAAAGTGCCAGGAATCGAGTTCGAGGAATGGGAATGAGAAATGCAAACCTGGAGATGAGCTGTTGTAGCAGACAAACCAGTAAACTTTTGTAG

mRNA sequence

ATGACAACATTGTTTCTCACAGAACAAACAACTGGGTTGTCCCACTGCAGAGCCGATCCAACCACATTGGCTCGAACGGTGAGCGGGAACACTCGAGGCCATCTTTCGGTTCCATACGACCTCAGAGCTTCTTCAACAGAAGGTGCTTCCGACTTGAGTGCAGTGGCCAGTTTTCTTGCTAGAACCACTGCATCTTCTAATGCACAGCATGCTCCTTGTCCTAGATTTGGAGTCATCGGATGCCAGGCATCTCCAACCAGGACCACTCTTCCCGATGAAGCGGGCGGGCTGACTGCAGGCCAAAGCCATCGGTCTACGAGGGGTGTTCGGATTAACGTGTCCTCCGGGGTTGTGTCCATGATGTTTAGTAGCTCAGATGGCCAGTTTTTTACCAGTTCTTTCGCTTGCTGCTTTAGAACAGCTGGATCTGTGATTTTTGGTCCTGCAATGAATCGAGTTCGAGGAATGGGAATGAGAAATGCAAACCTGGAGATGAGCTGTTGTAGCAGACAAACCAGTAAACTTTTGTAG

Coding sequence (CDS)

ATGACAACATTGTTTCTCACAGAACAAACAACTGGGTTGTCCCACTGCAGAGCCGATCCAACCACATTGGCTCGAACGGTGAGCGGGAACACTCGAGGCCATCTTTCGGTTCCATACGACCTCAGAGCTTCTTCAACAGAAGGTGCTTCCGACTTGAGTGCAGTGGCCAGTTTTCTTGCTAGAACCACTGCATCTTCTAATGCACAGCATGCTCCTTGTCCTAGATTTGGAGTCATCGGATGCCAGGCATCTCCAACCAGGACCACTCTTCCCGATGAAGCGGGCGGGCTGACTGCAGGCCAAAGCCATCGGTCTACGAGGGGTGTTCGGATTAACGTGTCCTCCGGGGTTGTGTCCATGATGTTTAGTAGCTCAGATGGCCAGTTTTTTACCAGTTCTTTCGCTTGCTGCTTTAGAACAGCTGGATCTGTGATTTTTGGTCCTGCAATGAATCGAGTTCGAGGAATGGGAATGAGAAATGCAAACCTGGAGATGAGCTGTTGTAGCAGACAAACCAGTAAACTTTTGTAG

Protein sequence

MTTLFLTEQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLARTTASSNAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTRGVRINVSSGVVSMMFSSSDGQFFTSSFACCFRTAGSVIFGPAMNRVRGMGMRNANLEMSCCSRQTSKLL
Homology
BLAST of CmoCh02G016120 vs. ExPASy TrEMBL
Match: A0A2P2K8D8 (Zeaxanthin epoxidaseic-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.7e-48
Identity = 109/163 (66.87%), Postives = 124/163 (76.07%), Query Frame = 0

Query: 1   MTTLFLTEQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLA 60
           M TLFLTEQT G SHCR+DPT  AR V GNTRGHLS+PYDL+ASST+ A +L+A ASFLA
Sbjct: 56  MITLFLTEQTRGFSHCRSDPTRFARMVKGNTRGHLSLPYDLKASSTDAAPELTAPASFLA 115

Query: 61  RTTASSNAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTRGVRINVSSGVVSM 120
           +TTASSNAQH PCP+FGVIGC ASPT TTLP EA GL AG S RSTRGV + VSSG+VS+
Sbjct: 116 KTTASSNAQHPPCPKFGVIGCHASPTSTTLPFEAVGLMAGHSQRSTRGVLLIVSSGLVSI 175

Query: 121 MFSSSDGQFFTSSFACCFRTAGSVIFGPAMNRVRGMGMRNANL 164
             +SS+ QF TSS A  F   GSVIFGPA        +RN N+
Sbjct: 176 KLNSSESQFLTSSLASFFNAKGSVIFGPAKR------LRNRNI 212

BLAST of CmoCh02G016120 vs. ExPASy TrEMBL
Match: A0A1Q3AZY0 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04843 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0

Query: 8   EQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLARTTASSN 67
           EQTTG SHC+++PT  AR V+G TRGHLS+ Y  RA ST+   +L A+ASFL RTTASSN
Sbjct: 90  EQTTGFSHCKSEPTRFARMVNGKTRGHLSLSYSRRARSTDSGPELMALASFLPRTTASSN 149

Query: 68  AQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTRGVRINVSSGVVSMMFSSSDG 127
           AQHAP PR GVIGC ASPT TTLP EA GL AG S RSTRGV + VSSGV S+M ++S G
Sbjct: 150 AQHAPWPRLGVIGCHASPTSTTLPVEAEGLMAGHSQRSTRGVLVTVSSGVTSIMCNNSSG 209

Query: 128 QFFTSSFACCFRTAGSVIFGPAMNRV 154
           QF +SSFA  F+  GSVIFGPA   V
Sbjct: 210 QFLSSSFAFFFKIDGSVIFGPAKQHV 235

BLAST of CmoCh02G016120 vs. ExPASy TrEMBL
Match: A0A498JTC4 (Fe2OG dioxygenase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_035841 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 76/104 (73.08%), Postives = 81/104 (77.88%), Query Frame = 0

Query: 3   TLFLTEQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLART 62
           TLF  + TTG SHCR+DPT  ARTVSG  RGHLS+PY+LRASST+   D  A ASFLAR 
Sbjct: 2   TLFRKKHTTGSSHCRSDPTRFARTVSGKMRGHLSLPYELRASSTDAGPDSMAPASFLARI 61

Query: 63  TASSNAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRST 107
           TASS AQ APCPRFGVIGC ASPT TTLP EAGGL  G SHRST
Sbjct: 62  TASSRAQQAPCPRFGVIGCHASPTSTTLPAEAGGLIPGHSHRST 105

BLAST of CmoCh02G016120 vs. ExPASy TrEMBL
Match: A0A5A7PR50 (Acyl-CoA synthetase/AMP-acid ligaseII OS=Striga asiatica OX=4170 GN=STAS_11022 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.6e-31
Identity = 88/149 (59.06%), Postives = 95/149 (63.76%), Query Frame = 0

Query: 2   TTLFLTEQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLAR 61
           +TL L E TT  S C   PT  AR V+GN RGHL  PYDL ASST      +A AS   R
Sbjct: 11  STLSLKEHTTEFSSCNKAPTRFARAVNGNIRGHLCSPYDLNASSTLKVPVFTASASNPVR 70

Query: 62  TTASSNAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTRGVRINVSSGVVSMM 121
           T ASS+AQ APCPRFGVIGCQASPTRTT P E GGLT GQSHRSTRGV I VSSG   M 
Sbjct: 71  TIASSSAQQAPCPRFGVIGCQASPTRTTFPFEDGGLTPGQSHRSTRGVLIIVSSGEDRMT 130

Query: 122 FSSSDGQFFTSSFACCFRTAGSVIFGPAM 151
             SS GQ  TS    C +  GS + G  +
Sbjct: 131 SKSSVGQSLTSVSVSCLKMDGSHMPGDGL 159

BLAST of CmoCh02G016120 vs. ExPASy TrEMBL
Match: A0A7J6EQS5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015095 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 0

Query: 8   EQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGAS-DLSAVASFLARTTASS 67
           EQT GLSHCRA+PT LAR V GNTRGHLS PY+LRA ST+    DL A+ASFL RTTASS
Sbjct: 240 EQTIGLSHCRANPTRLARMVRGNTRGHLSFPYELRAFSTDCVDPDLIALASFLDRTTASS 299

Query: 68  NAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTR 108
           +AQ APCPR GVIGC ASPT TT P+EAGGL  G +HRSTR
Sbjct: 300 SAQQAPCPRLGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 340

BLAST of CmoCh02G016120 vs. NCBI nr
Match: GAV61316.1 (hypothetical protein CFOL_v3_04843 [Cephalotus follicularis])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-41
Identity = 96/146 (65.75%), Postives = 110/146 (75.34%), Query Frame = 0

Query: 8   EQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLARTTASSN 67
           EQTTG SHC+++PT  AR V+G TRGHLS+ Y  RA ST+   +L A+ASFL RTTASSN
Sbjct: 90  EQTTGFSHCKSEPTRFARMVNGKTRGHLSLSYSRRARSTDSGPELMALASFLPRTTASSN 149

Query: 68  AQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTRGVRINVSSGVVSMMFSSSDG 127
           AQHAP PR GVIGC ASPT TTLP EA GL AG S RSTRGV + VSSGV S+M ++S G
Sbjct: 150 AQHAPWPRLGVIGCHASPTSTTLPVEAEGLMAGHSQRSTRGVLVTVSSGVTSIMCNNSSG 209

Query: 128 QFFTSSFACCFRTAGSVIFGPAMNRV 154
           QF +SSFA  F+  GSVIFGPA   V
Sbjct: 210 QFLSSSFAFFFKIDGSVIFGPAKQHV 235

BLAST of CmoCh02G016120 vs. NCBI nr
Match: RXH97173.1 (hypothetical protein DVH24_035841 [Malus domestica])

HSP 1 Score: 146.0 bits (367), Expect = 3.1e-31
Identity = 76/104 (73.08%), Postives = 81/104 (77.88%), Query Frame = 0

Query: 3   TLFLTEQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLART 62
           TLF  + TTG SHCR+DPT  ARTVSG  RGHLS+PY+LRASST+   D  A ASFLAR 
Sbjct: 2   TLFRKKHTTGSSHCRSDPTRFARTVSGKMRGHLSLPYELRASSTDAGPDSMAPASFLARI 61

Query: 63  TASSNAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRST 107
           TASS AQ APCPRFGVIGC ASPT TTLP EAGGL  G SHRST
Sbjct: 62  TASSRAQQAPCPRFGVIGCHASPTSTTLPAEAGGLIPGHSHRST 105

BLAST of CmoCh02G016120 vs. NCBI nr
Match: GER34767.1 (acyl-CoA synthetase/AMP-acid ligaseII [Striga asiatica])

HSP 1 Score: 145.2 bits (365), Expect = 5.3e-31
Identity = 88/149 (59.06%), Postives = 95/149 (63.76%), Query Frame = 0

Query: 2   TTLFLTEQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGASDLSAVASFLAR 61
           +TL L E TT  S C   PT  AR V+GN RGHL  PYDL ASST      +A AS   R
Sbjct: 11  STLSLKEHTTEFSSCNKAPTRFARAVNGNIRGHLCSPYDLNASSTLKVPVFTASASNPVR 70

Query: 62  TTASSNAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTRGVRINVSSGVVSMM 121
           T ASS+AQ APCPRFGVIGCQASPTRTT P E GGLT GQSHRSTRGV I VSSG   M 
Sbjct: 71  TIASSSAQQAPCPRFGVIGCQASPTRTTFPFEDGGLTPGQSHRSTRGVLIIVSSGEDRMT 130

Query: 122 FSSSDGQFFTSSFACCFRTAGSVIFGPAM 151
             SS GQ  TS    C +  GS + G  +
Sbjct: 131 SKSSVGQSLTSVSVSCLKMDGSHMPGDGL 159

BLAST of CmoCh02G016120 vs. NCBI nr
Match: KAF4360772.1 (hypothetical protein F8388_015095 [Cannabis sativa])

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-29
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 0

Query: 8   EQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGAS-DLSAVASFLARTTASS 67
           EQT GLSHCRA+PT LAR V GNTRGHLS PY+LRA ST+    DL A+ASFL RTTASS
Sbjct: 240 EQTIGLSHCRANPTRLARMVRGNTRGHLSFPYELRAFSTDCVDPDLIALASFLDRTTASS 299

Query: 68  NAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTR 108
           +AQ APCPR GVIGC ASPT TT P+EAGGL  G +HRSTR
Sbjct: 300 SAQQAPCPRLGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 340

BLAST of CmoCh02G016120 vs. NCBI nr
Match: KAF4395364.1 (hypothetical protein G4B88_010828, partial [Cannabis sativa])

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-29
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 0

Query: 8   EQTTGLSHCRADPTTLARTVSGNTRGHLSVPYDLRASSTEGAS-DLSAVASFLARTTASS 67
           EQT GLSHCRA+PT LAR V GNTRGHLS PY+LRA ST+    DL A+ASFL RTTASS
Sbjct: 228 EQTIGLSHCRANPTRLARMVRGNTRGHLSFPYELRAFSTDCVDPDLIALASFLDRTTASS 287

Query: 68  NAQHAPCPRFGVIGCQASPTRTTLPDEAGGLTAGQSHRSTR 108
           +AQ APCPR GVIGC ASPT TT P+EAGGL  G +HRSTR
Sbjct: 288 SAQQAPCPRLGVIGCHASPTSTTPPEEAGGLMVGHNHRSTR 328

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P2K8D86.7e-4866.87Zeaxanthin epoxidaseic-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A1Q3AZY01.2e-4165.75Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04843 PE=4... [more]
A0A498JTC41.5e-3173.08Fe2OG dioxygenase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_... [more]
A0A5A7PR502.6e-3159.06Acyl-CoA synthetase/AMP-acid ligaseII OS=Striga asiatica OX=4170 GN=STAS_11022 P... [more]
A0A7J6EQS51.1e-2973.27Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015095 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
GAV61316.12.5e-4165.75hypothetical protein CFOL_v3_04843 [Cephalotus follicularis][more]
RXH97173.13.1e-3173.08hypothetical protein DVH24_035841 [Malus domestica][more]
GER34767.15.3e-3159.06acyl-CoA synthetase/AMP-acid ligaseII [Striga asiatica][more]
KAF4360772.12.2e-2973.27hypothetical protein F8388_015095 [Cannabis sativa][more]
KAF4395364.12.2e-2973.27hypothetical protein G4B88_010828, partial [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G016120.1CmoCh02G016120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003824 catalytic activity