CmoCh02G016030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G016030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 9239282 .. 9242751 (-)
RNA-Seq Expression	CmoCh02G016030
Synteny	CmoCh02G016030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCCAGAGGGCATTGTCCTCGAGAGCAAAGGCGGTAATGGTGTCGGGACCGCCGAGATGGAGGAGGAGAAAAGGGGCCCAGAAGGCGAGAAGTTCTTGATTGGCATCGGACTTTTTCTTGTTACTGCTGTCGTCGTTGTTGTTGGAAATGAGGCCGACGATGAAACTGGCGGTCCAATCGGCGAGGAGATAGGCGGACCAGAGGAGGAAGATGGGGAGTTTTCTAGAGGTGCGTTTCCTGAGAGGAGCACAGAGGATTAGGAAGGTTTGTAAGGAGAGACTGAAGAGGATTAGGCCTCTAATGTTCCATTCTTCCCAGATTTCTTTAACTCTTGGTGGAATTATATCGAGCGTCTGGTTATTTGAGGGTGGTGTTTCGAGAAGCAGAGTGTGGACTGGAAATTTCTCAGTCAGGGAAGCCATGGGAGTGGGTTTTTTCAGCTGAATTTGGTCTTGTTCATGTCTGGTTGTGTTCCCATTTTTTGTAGGCTTGTTGAAATGAAGAATTGAGAACGAAAAAGGTTTCAGAGACGAACTGGAAGGCTAAGAAAGGACTGGTCAATTATGGAGGAGGACAAAGCAAAACATTGACTTTCTTTTCTTCTTTTGACCAAGATCTTACTTCCTATCACCTCATCAATACTTTACTTTTGATTCCTAAGATTTAAATCATGGTTTTGTTTTCGTTGTTTTTTTTAATATAATATTTAGAGCCATTTCAATCTCGGGTGGAAACTATAACTTTAATTTCTTCTTTTGACCAACAAATACTTTATGACTTTGTTAGGAATTCATGACCTTCCACAATTATATAATGTTGTCTGTGGCTTTGCTTTTGTTTTAAGGCTGAAACAATGAAAATAGTATTCCTCGCTTGTAAACCTACAATTTCGCTGTTCACAATAATTCTTCGCTTATAAACCTACAATTTCGCTGTTCACAATAATCCTCAACGAACCTATACTAACATTTACCTTTGATTTTCGTAGTGGAAACTATGTGTTAACTAATTTGTTTGAAGAACTACTTATGAAAGAGAGAATTGATATATACTAATTTAAAAGAGTCAAACAGGATGAGGACAGGGAACAAGGATCGACAAGGCCATCTGGTTCTTGTCTTCATTTAGCTGGCGATGAATTTTCTTTTCTTCCTGGGACTCCATTTCTCGCCCAACCATGAATTTTCACCAGAAAAATGAAGATCTAGATCCAACTTCAATTACTCTCAATTCAATTTTCTATGAATGAAATCAACTCATGAGCGAACATTCAGGAAACATAACCAAAATGAATATAGACTCAGAAAGAACCATACATTTAGTATACGCACCATAACCAGCTGCTCTTTTAGGTTGCTGCTTCTCAATGCCACCATTGTTTTTATCGCTACTGGCATGGTTTCATCCACACTCCATTGGCATCACAGGGGCAGAAAGTAACTCTTGGACATCGTACTTTCTGCAAGTAACTCAAATTTGGGAAAGATTTCTGAAGTTCTCTCCATTCTATCTTTAATTCCGTCATGTGTTTCAGACGAACGACCTCGGCCTTCCATGGTTCGCTCCCGAGCTCTGCTAGTTTCCCTCCTCTAATGTAGAGTCTCTTCAGGCTTGTCAAATTTGAAGGATTTAGCCATAAGGGTAGCTTCTCCTTTGGCAGACATTCCATCTCAAGCTTCTCTAACTCTTTTGGTAGTTCTAAGATCACATCATTAGACTGATCCCTTTGTTTGCTGAATTGCATGGTTAGCTGTCTGCCGATTTTCCTCGTTACTTGTCGTATCATGTTTCGTTCGCCCGATGATGGTTGCTTCAACCCTTCGGCCACCCATACAATGCCAAGAGTTCGAAGCTTACCGTGCTCCCCAAGATCTTGGAGAACACGGAGATCCGTTTCGTCGGGGAAATCACGCCTGTTCGTGTTGATACTCAACTTTCTGAGCTTCTTAAAACCTCTCAGATCATTGAGACTTGACCTCCCTGCAACAAACCCCTTCAAGACTCTAAGTTCAGTGAGTTTGGATATGGATGTTGGCATCTGATCAAGCATATAGCAGCCGGAGACATCCAAATGCGTGAGCCTCTTGAGAGATCCTATGCCCTGAGGAAGTGTCTCCAGATTGAAACAAGATTTCAAGTCTAACACTCTGAGTTCACTCAATGTTCTTATGGAATTTGGAAGCTTGTTGATCCAGGAGATCCCTTGGAGGCTCAAAAGCCTCAGTTTTTTCATTTTCTTCAAACCTTCTAAGAACTCAAGGCTTTCGACCTCAATTTGCTGCTCATCAACTGCACTTTGCCACCTCCCCAAGTAAAGAACTTTGAGGTTTTTCAGCTTTAGCAACCACTCAACAACTTTGTCAGTTCTCATGTCTACTTCCCCTTTCTTGGCCAACCACTCCAATGCAGAATCAGGGAAAGGTTGGCTAACATTGAAGATTGATTCCATGGTAACTTCCAAATTCTGATCCGTCGTCAACGTCGGTGCTTTCGGCTGGTGAAGACCTCCCCCCTTCACCAGAAAAATCCTATCACAGCCAGAAGATTTACCAATTGGGTTGTCCCCGGAATCATAATTCAAAAACTGTTCTTTTTTGGCCAGGACAATTGCAGCAGAACGAACAATAGGGGGCATTGTAAACTTCTTTTTGACCTTCTTCTGTTCTTCCTTCAGCGGCACAATCAAACCCTTCTCTGCAAATTTCTTAAGGATCTCACCAGCACGAACTTCAGGCATTTGATCTCCACTGCCTGAAGAGTCCAGAAGGCCTTCTCCAATCCACCAATGTGTAAGTAATCGCTTCTTTAACACAACATTTTCAGGAAACGCAGCAAAATACAAAAAGCACTTCTTACAGATATCATCACCAAAGCCGTTGTAAATGTCCTGAATTTCTATAAAAGCAGGACTTTCGTCGAACACCTTATGGGCATACAAATTTGGCAACTTGAACTCATCCTGCCTCGCCGTTCCACCTCCCTTGTCAACCAAATGGGCGGTGTTTCCAGCCAAGGACAACTTTTGGTACGAAGGAATTTGGAACTTCAACGTCTTCATATCCTTACTTACCGCATCAAGAAAATTCTCTTCGATTTTCTGATCTAATTCGATGCTTTTGATAACCTCCTTGAGACTGGCTTTTATGCTCTGTATCGGCTCTTTGAGTTGCTTATCGAGCTCGTTTGTTGCCTCCAACGCCCCCTTCAAATGCTCGATGTTGGTCAATAACTTCTCAAATTGGGGATTTTGATTCGCCCTGATGCTAGCATTAGTTTCTGTATGAGGCCTTTCAGCCTCCTCTATCTGATCGTCGGCGGAGGCTGGAGCACGCCGATTAGCGGAGGCTGGAGCACGCCGATTAGCGGCGGCTTGGGCCCTGGTGGTGGATTCTTTAAGGGCAGTGGAGAGCTCTCCGTGCAATTTCGACAGCGATTCGATCATTTGGGGAATTGTTGGAATTAG

mRNA sequence

ATGGCGAAGCCAGAGGGCATTGTCCTCGAGAGCAAAGGCGGTAATGGTGTCGGGACCGCCGAGATGGAGGAGGAGAAAAGGGGCCCAGAAGGCGAGAAGTTCTTGATTGGCATCGGACTTTTTCTTGTTACTGCTGTCGTCGTTGTTGTTGGAAATGAGGCCGACGATGAAACTGGCGGTCCAATCGGCGAGGAGATAGGCGGACCAGAGGAGGAAGATGGGGAGTTTTCTAGAGGATCTCACCAGCACGAACTTCAGGCATTTGATCTCCACTGCCTGAAGAGTCCAGAAGGCCTTCTCCAATCCACCAATGTCCTCCTCTATCTGATCGTCGGCGGAGGCTGGAGCACGCCGATTAGCGGAGGCTGGAGCACGCCGATTAGCGGCGGCTTGGGCCCTGGTGGTGGATTCTTTAAGGGCAGTGGAGAGCTCTCCGTGCAATTTCGACAGCGATTCGATCATTTGGGGAATTGTTGGAATTAG

Coding sequence (CDS)

ATGGCGAAGCCAGAGGGCATTGTCCTCGAGAGCAAAGGCGGTAATGGTGTCGGGACCGCCGAGATGGAGGAGGAGAAAAGGGGCCCAGAAGGCGAGAAGTTCTTGATTGGCATCGGACTTTTTCTTGTTACTGCTGTCGTCGTTGTTGTTGGAAATGAGGCCGACGATGAAACTGGCGGTCCAATCGGCGAGGAGATAGGCGGACCAGAGGAGGAAGATGGGGAGTTTTCTAGAGGATCTCACCAGCACGAACTTCAGGCATTTGATCTCCACTGCCTGAAGAGTCCAGAAGGCCTTCTCCAATCCACCAATGTCCTCCTCTATCTGATCGTCGGCGGAGGCTGGAGCACGCCGATTAGCGGAGGCTGGAGCACGCCGATTAGCGGCGGCTTGGGCCCTGGTGGTGGATTCTTTAAGGGCAGTGGAGAGCTCTCCGTGCAATTTCGACAGCGATTCGATCATTTGGGGAATTGTTGGAATTAG

Protein sequence

MAKPEGIVLESKGGNGVGTAEMEEEKRGPEGEKFLIGIGLFLVTAVVVVVGNEADDETGGPIGEEIGGPEEEDGEFSRGSHQHELQAFDLHCLKSPEGLLQSTNVLLYLIVGGGWSTPISGGWSTPISGGLGPGGGFFKGSGELSVQFRQRFDHLGNCWN

Homology

[Close]

BLAST of CmoCh02G016030 vs. ExPASy TrEMBL
Match: A0A199UZ84 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_07718 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 36/99 (36.36%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 1   MAKPEGIVLESKGGNGVGTAEMEEEKRGPEGE-KFLIGIGLFLVTAVVVV---------- 60
           +A PE +VL  +GG+GVG AE+EEE+ GPEGE     G+      A              
Sbjct: 114 VAAPELVVLNREGGDGVGAAEVEEEEGGPEGEDDGAAGVVTAAAAAAAAASAARGGGGVG 173

Query: 61  -------------VGNEADDETGGPIGEEIGGPEEEDGE 76
                        V  EA+ E G P+GEE+ GP++E GE
Sbjct: 174 GDGGGGGADVAEGVEEEAEAEVGDPVGEEVAGPDDEAGE 212

The following BLAST results are available for this feature:

BLAST of CmoCh02G016030 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G016030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A199UZ84	7.1e-04	36.36	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_07718 PE=4 SV=1	[more]

BLAST of CmoCh02G016030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh02G016030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G016030.1	CmoCh02G016030.1	mRNA