CmoCh02G015640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G015640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cmo_Chr02: 9041144 .. 9042116 (-)
RNA-Seq Expression	CmoCh02G015640
Synteny	CmoCh02G015640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAGCTGGTTTTTCTTCTTCTGCACCATTGTTACCAATCTTTAATGGTGAGAAATATGAGTGGTGGAGCATCAAGATGAAGACCTTGCTCAGATCGCAGGAGCTATGGGACTTGGTGGAGCACGGGTTTGTTGATCTTTTAGAACCCACAATAGAAGAAAAGGAGAGACTAAGAGAAACCAAGAAAAACGATGCCAAGGCTTTATTCATTATTCAGCAAGCAGTTCATGAGACTATCTTTTCACGAATTGCAGCAGCAACCACATCAAAGCAAGCATGGTCAATTCTGCAGAAAGAGTTTCAGGGAGATTCAAAAGTCATAATAGTGAAATTGCAGTCTCTAAGACGTGATTTTGAAACTCTGCTCATGACGAATGGCGAATCAATTGCTGACTTTTTGTCCAGAACAATGGCAATAGTCAGTCAGATGCGCACCTATGGAGAGAAAATTTCAGACGAAACAATTGTTGCAAAGGTGTTGAGAAGCTTAACTCCAAAGTTTGACCATGTGGTGGCTGCCATAGAAGAAGCCAAGGATCTATCCATACTCTCCGTTGATGAACTGATGGGCTCGCTTCAGGCTCATGAGGCAAGAATCAACAGAGCATCAGAAAGGAACGAAGAAAAGGCACTACAAGTGAAGGAGACAACCAATAACGAAAGAGAAAATATTCATTTAGCAGGTAGAAGTCGTGGAAGAGGAGGATTTCGCAACTTCCATGGTAGTCGTGATAACAGTTGGAGAAGTGATGGACAGAGACAATTCAATGAACAAAGGAATGTCATACAATGTTACCATTGTAGAAGGTATGGGCACACAAAATCTAATTGTTGGTATAAAAATCAACGAATGAATTTTGCAGCAGAGAATGAAGAAGAAGAAGAAAAGTTGTTTGTGGCGTGCATGGATACTAATCCGGAAAAAGGTAGCTTATGGTTTGTTGATAGCGGATGCTCGAACCATATGA

mRNA sequence

ATGGCAGTAGCTGGTTTTTCTTCTTCTGCACCATTGTTACCAATCTTTAATGGTGAGAAATATGAGTGGTGGAGCATCAAGATGAAGACCTTGCTCAGATCGCAGGAGCTATGGGACTTGGTGGAGCACGGGTTTGTTGATCTTTTAGAACCCACAATAGAAGAAAAGGAGAGACTAAGAGAAACCAAGAAAAACGATGCCAAGGCTTTATTCATTATTCAGCAAGCAGTTCATGAGACTATCTTTTCACGAATTGCAGCAGCAACCACATCAAAGCAAGCATGGTCAATTCTGCAGAAAGAGTTTCAGGGAGATTCAAAAGTCATAATAGTGAAATTGCAGTCTCTAAGACGTGATTTTGAAACTCTGCTCATGACGAATGGCGAATCAATTGCTGACTTTTTGTCCAGAACAATGGCAATAGTCAGTCAGATGCGCACCTATGGAGAGAAAATTTCAGACGAAACAATTGTTGCAAAGGTGTTGAGAAGCTTAACTCCAAAGTTTGACCATGTGGTGGCTGCCATAGAAGAAGCCAAGGATCTATCCATACTCTCCGTTGATGAACTGATGGGCTCGCTTCAGGCTCATGAGGCAAGAATCAACAGAGCATCAGAAAGGAACGAAGAAAAGGCACTACAAGTGAAGGAGACAACCAATAACGAAAGAGAAAATATTCATTTAGCAGGTAGAAGTCGTGGAAGAGGAGGATTTCGCAACTTCCATGGTAGTCGTGATAACAGTTGGAGAAGTGATGGACAGAGACAATTCAATGAACAAAGGAATAGAATGAAGAAGAAGAAGAAAAGTTGTTTGTGGCGTGCATGGATACTAATCCGGAAAAAGGTAGCTTATGGTTTGTTGATAGCGGATGCTCGAACCATATGA

Coding sequence (CDS)

ATGGCAGTAGCTGGTTTTTCTTCTTCTGCACCATTGTTACCAATCTTTAATGGTGAGAAATATGAGTGGTGGAGCATCAAGATGAAGACCTTGCTCAGATCGCAGGAGCTATGGGACTTGGTGGAGCACGGGTTTGTTGATCTTTTAGAACCCACAATAGAAGAAAAGGAGAGACTAAGAGAAACCAAGAAAAACGATGCCAAGGCTTTATTCATTATTCAGCAAGCAGTTCATGAGACTATCTTTTCACGAATTGCAGCAGCAACCACATCAAAGCAAGCATGGTCAATTCTGCAGAAAGAGTTTCAGGGAGATTCAAAAGTCATAATAGTGAAATTGCAGTCTCTAAGACGTGATTTTGAAACTCTGCTCATGACGAATGGCGAATCAATTGCTGACTTTTTGTCCAGAACAATGGCAATAGTCAGTCAGATGCGCACCTATGGAGAGAAAATTTCAGACGAAACAATTGTTGCAAAGGTGTTGAGAAGCTTAACTCCAAAGTTTGACCATGTGGTGGCTGCCATAGAAGAAGCCAAGGATCTATCCATACTCTCCGTTGATGAACTGATGGGCTCGCTTCAGGCTCATGAGGCAAGAATCAACAGAGCATCAGAAAGGAACGAAGAAAAGGCACTACAAGTGAAGGAGACAACCAATAACGAAAGAGAAAATATTCATTTAGCAGGTAGAAGTCGTGGAAGAGGAGGATTTCGCAACTTCCATGGTAGTCGTGATAACAGTTGGAGAAGTGATGGACAGAGACAATTCAATGAACAAAGGAATAGAATGAAGAAGAAGAAGAAAAGTTGTTTGTGGCGTGCATGGATACTAATCCGGAAAAAGGTAGCTTATGGTTTGTTGATAGCGGATGCTCGAACCATATGA

Protein sequence

MAVAGFSSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLRETKKNDAKALFIIQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMTNGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILSVDELMGSLQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHGSRDNSWRSDGQRQFNEQRNRMKKKKKSCLWRAWILIRKKVAYGLLIADARTI

Homology

[Close]

BLAST of CmoCh02G015640 vs. ExPASy TrEMBL
Match: A0A6J1HHV7 (uncharacterized protein LOC111464223 OS=Cucurbita moschata OX=3662 GN=LOC111464223 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 8.0e-86
Identity = 175/193 (90.67%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 74  QQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMTNGESIAD 133
           +QAVH TIFSRIAAATT KQAWSILQKEF GDSKV+ VKLQSLRRDFETLLMTNGESIA+
Sbjct: 21  RQAVHHTIFSRIAAATTLKQAWSILQKEFLGDSKVMTVKLQSLRRDFETLLMTNGESIAN 80

Query: 134 FLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILSVDELMGS 193
           FLSR+M IVSQMRTYGEKIS+ETIVAKVLR+LTPKFDHVVAAIEEAKDLSILSVDELM S
Sbjct: 81  FLSRSMTIVSQMRTYGEKISNETIVAKVLRNLTPKFDHVVAAIEEAKDLSILSVDELMDS 140

Query: 194 LQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHGSRDNSWRSDG 253
           LQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHG RDN WRSDG
Sbjct: 141 LQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHGGRDNRWRSDG 200

Query: 254 QRQFNEQRNRMKK 267
           QRQFNEQRN +++
Sbjct: 201 QRQFNEQRNVIQR 213

[Close]

BLAST of CmoCh02G015640 vs. ExPASy TrEMBL
Match: A0A5J5B7G1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_027881 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.3e-83
Identity = 177/261 (67.82%), Postives = 203/261 (77.78%), Query Frame = 0


Query: 7   SSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLRETKKND 66
           S++ PL+ +F GE Y +WSI+M TL +SQELWDLVE G+ D      +E+ RL+E KK D
Sbjct: 9   SAAQPLILVFKGEGYGFWSIRMMTLFKSQELWDLVEQGYAD-----PDEETRLKENKKKD 68

Query: 67  AKALFIIQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMT 126
           +KAL IIQQAVH++IFSRIAAATTSKQAWS LQKEFQGDSKVI+VKLQSLRRDFETL M 
Sbjct: 69  SKALMIIQQAVHDSIFSRIAAATTSKQAWSTLQKEFQGDSKVIVVKLQSLRRDFETLYMK 128

Query: 127 NGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILS 186
           +GESIADFLSR   IVSQMR+YGEKISDET+VAKVLRSLTPKFDHVVAAIEE+KDLS+ S
Sbjct: 129 SGESIADFLSRVTTIVSQMRSYGEKISDETVVAKVLRSLTPKFDHVVAAIEESKDLSVFS 188

Query: 187 VDELMGSLQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFR-----NF 246
            DELMGSLQAHE RI+R+ E+NEEKA QVK+      E+     R RGRGGFR       
Sbjct: 189 FDELMGSLQAHETRIDRSLEQNEEKAFQVKDIVTKAAESDSSISRGRGRGGFRGRGRGRG 248

Query: 247 HGSRDNSWRSDGQRQFNEQRN 263
            G+     R DGQRQ  EQRN
Sbjct: 249 RGNGRGRGRFDGQRQSGEQRN 264

[Close]

BLAST of CmoCh02G015640 vs. ExPASy TrEMBL
Match: A0A0V0IV83 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 4.9e-83
Identity = 176/266 (66.17%), Postives = 206/266 (77.44%), Query Frame = 0


Query: 1   MAVAGFSSSA--PLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKER 60
           MA  G S S   PL+P+F GE YE+WSI+MKT+L+SQ+LWDLVE G+ D      +E+ R
Sbjct: 1   MATNGSSLSVAQPLIPVFKGESYEFWSIRMKTILKSQDLWDLVERGYTD-----PDEENR 60

Query: 61  LRETKKNDAKALFIIQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRR 120
           LR+ KK DAKAL  IQQAVH++IFSRIA ATTSKQAWSILQK FQGDSKVI+V+LQSLRR
Sbjct: 61  LRDNKKKDAKALVFIQQAVHDSIFSRIAXATTSKQAWSILQKXFQGDSKVIVVRLQSLRR 120

Query: 121 DFETLLMTNGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEE 180
           DFETL+M +GESIA FLSR M IVSQ+R+YGEK++D+ IV KVLRSL PKFDHVVAAIEE
Sbjct: 121 DFETLMMKSGESIASFLSRAMTIVSQIRSYGEKVTDQIIVEKVLRSLNPKFDHVVAAIEE 180

Query: 181 AKDLSILSVDELMGSLQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGF 240
           +KDLS+ S DELMGSLQAHEAR NR+ E+NEEKA QVK+ T    +N   A R RGRGGF
Sbjct: 181 SKDLSVFSFDELMGSLQAHEARRNRSVEKNEEKAFQVKDATTKYGDNNGPASRGRGRGGF 240

Query: 241 RNFHGS--RDNSWRSDGQRQFNEQRN 263
           R   G        R++G RQ NEQ N
Sbjct: 241 RGGRGRGFGRGRGRNNGHRQSNEQGN 261

[Close]

BLAST of CmoCh02G015640 vs. ExPASy TrEMBL
Match: A0A6J1EUM8 (uncharacterized protein LOC111438050 OS=Cucurbita moschata OX=3662 GN=LOC111438050 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 3.5e-81
Identity = 185/283 (65.37%), Postives = 196/283 (69.26%), Query Frame = 0


Query: 21  YEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLRETKKNDAKALFIIQQAVHET 80
           YEWWSIKMKTLLRSQELWDLVE+GFVD+ EPTIEE+E LRETKKND  ALFIIQQAVHET
Sbjct: 54  YEWWSIKMKTLLRSQELWDLVEYGFVDISEPTIEEEETLRETKKNDVNALFIIQQAVHET 113

Query: 81  IFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMTNGESIADFLSRTMA 140
           IFSRIAAATTSKQAWSIL KEF+GDSKV I                           TM 
Sbjct: 114 IFSRIAAATTSKQAWSILLKEFEGDSKVKIT--------------------------TMT 173

Query: 141 IVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEA-KDLSILSVDELMGSLQAHEA 200
           IVS MRTYGEKISDETIVAKVLRSLTPKFDHV   IEEA KDLSILSVDELMG LQAHE+
Sbjct: 174 IVSPMRTYGEKISDETIVAKVLRSLTPKFDHVATTIEEATKDLSILSVDELMGLLQAHES 233

Query: 201 RINRASERNEEKALQVK------------------ETTN--------------------- 260
           RIN++SERNEEK LQV+                  ETTN                     
Sbjct: 234 RINKSSERNEEKTLQVETDNNEGNERENIEKALQVETTNNEGNKRENIEKALQVETANNE 293

Query: 261 -NERENIHLAGRSRGRGGFRNFHGSRDNSWRSDGQRQFNEQRN 263
            NE+EN+ LA RS GR GFR+FHG RDN WRSDGQRQFNEQRN
Sbjct: 294 GNEKENVCLASRSCGREGFRSFHGDRDNRWRSDGQRQFNEQRN 310

[Close]

BLAST of CmoCh02G015640 vs. ExPASy TrEMBL
Match: A0A5J4ZYP9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_010614 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.2e-78
Identity = 168/259 (64.86%), Postives = 198/259 (76.45%), Query Frame = 0


Query: 7   SSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLRETKKND 66
           S++ PL+ +F GE Y +WSI++ TL +SQ+LWDLVE G+ D  E T     RL+E KK D
Sbjct: 9   SAAQPLILVFKGEGYGFWSIQIMTLFKSQDLWDLVEQGYADPNEET-----RLKENKKKD 68

Query: 67  AKALFIIQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMT 126
           +KAL IIQQAVH++IFSRI  ATTSKQAWS LQKEFQGDSKVI+VKLQSLRRDFETL M 
Sbjct: 69  SKALLIIQQAVHDSIFSRIETATTSKQAWSTLQKEFQGDSKVIMVKLQSLRRDFETLYMK 128

Query: 127 NGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILS 186
           +GESIADFLSR   IVSQMR+Y EKISDET+VAKVLRSLTP FDHVV+AIEE+KDLS+ S
Sbjct: 129 SGESIADFLSRVTTIVSQMRSYDEKISDETVVAKVLRSLTPNFDHVVSAIEESKDLSVFS 188

Query: 187 VDELMGSLQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGF---RNFHG 246
            DELMGSLQAHE RIN++ E+N+EKA QVK+      ++  L  R RGRGGF      +G
Sbjct: 189 FDELMGSLQAHETRINQSLEKNKEKAFQVKDIVTKAAKSDSLTSRGRGRGGFCGRGRGYG 248

Query: 247 SRDNSWRSDGQRQFNEQRN 263
           +     R DGQ Q  EQRN
Sbjct: 249 NGRGRGRFDGQWQSGEQRN 262

[Close]

BLAST of CmoCh02G015640 vs. NCBI nr
Match: XP_023541813.1 (uncharacterized protein LOC111801847 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-131
Identity = 257/267 (96.25%), Postives = 259/267 (97.00%), Query Frame = 0


Query: 1   MAVAGFSSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLR 60
           MAVAGFSSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLR
Sbjct: 1   MAVAGFSSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLR 60

Query: 61  ETKKNDAKALFIIQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDF 120
           ETKKNDAKALFIIQQAVHE IFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDF
Sbjct: 61  ETKKNDAKALFIIQQAVHEIIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDF 120

Query: 121 ETLLMTNGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAK 180
           ETLLMTNGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAK
Sbjct: 121 ETLLMTNGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAK 180

Query: 181 DLSILSVDELMGSLQAHEARINRASERNEEKALQVKETT---NNERENIHLAGRSRGRGG 240
           DLSILSVDEL+GSLQAHEARINRASERNEEKALQVKETT   NNERENIHLAGRSRGRGG
Sbjct: 181 DLSILSVDELLGSLQAHEARINRASERNEEKALQVKETTNNENNERENIHLAGRSRGRGG 240

Query: 241 FRNFHGSRDN--SWRSDGQRQFNEQRN 263
           FR+FHG RDN   WRSDGQRQFNEQRN
Sbjct: 241 FRSFHGGRDNRGRWRSDGQRQFNEQRN 267

[Close]

BLAST of CmoCh02G015640 vs. NCBI nr
Match: XP_023539449.1 (uncharacterized protein LOC111800103 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 3.9e-87
Identity = 184/222 (82.88%), Postives = 199/222 (89.64%), Query Frame = 0


Query: 36  ELWDLVEHGFVDLLEPTIEEKERLRETKKNDAKALFIIQQAVHETIFSRIAAATTSKQAW 95
           ELWDLVEHGFVD+LE TIEEK+RLRETKKND  ALFII QA+HETIFSRIAAATTSKQAW
Sbjct: 51  ELWDLVEHGFVDVLESTIEEKKRLRETKKNDVNALFII-QAIHETIFSRIAAATTSKQAW 110

Query: 96  SILQKEFQGDSKVIIVKLQSLRRDFETLLMTNGESIADFLSRTMAIVSQMRTYGEKISDE 155
           SILQKEFQGDSKVI V+LQSLRRDFETLLMTNG+SIA+FLSR M IV+QMRTYGEKIS E
Sbjct: 111 SILQKEFQGDSKVITVELQSLRRDFETLLMTNGKSIAEFLSRAMTIVNQMRTYGEKISKE 170

Query: 156 TIVAKVLRSLTPKFDHVVAAIEEAKDLSILSVDELMGSLQAHEARINRASERNEEKALQV 215
           TIVAKVLRSLTPKFDHVVAAIEEAKDLSILSVD+LMGSLQAHEARINR+ ERNEEKALQV
Sbjct: 171 TIVAKVLRSLTPKFDHVVAAIEEAKDLSILSVDDLMGSLQAHEARINRSLERNEEKALQV 230

Query: 216 KETTN---NERENIHLAGRSRGRGGFRNFHGSRDN--SWRSD 253
           KE  N   NE++NI L GRSRG GGFR+F+G   +   WR+D
Sbjct: 231 KEIGNNEGNEKKNIPLVGRSRGSGGFRSFYGGCGSMGRWRND 271

[Close]

BLAST of CmoCh02G015640 vs. NCBI nr
Match: XP_022964086.1 (uncharacterized protein LOC111464223 [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 1.7e-85
Identity = 175/193 (90.67%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 74  QQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMTNGESIAD 133
           +QAVH TIFSRIAAATT KQAWSILQKEF GDSKV+ VKLQSLRRDFETLLMTNGESIA+
Sbjct: 21  RQAVHHTIFSRIAAATTLKQAWSILQKEFLGDSKVMTVKLQSLRRDFETLLMTNGESIAN 80

Query: 134 FLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILSVDELMGS 193
           FLSR+M IVSQMRTYGEKIS+ETIVAKVLR+LTPKFDHVVAAIEEAKDLSILSVDELM S
Sbjct: 81  FLSRSMTIVSQMRTYGEKISNETIVAKVLRNLTPKFDHVVAAIEEAKDLSILSVDELMDS 140

Query: 194 LQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHGSRDNSWRSDG 253
           LQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHG RDN WRSDG
Sbjct: 141 LQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFRNFHGGRDNRWRSDG 200

Query: 254 QRQFNEQRNRMKK 267
           QRQFNEQRN +++
Sbjct: 201 QRQFNEQRNVIQR 213

[Close]

BLAST of CmoCh02G015640 vs. NCBI nr
Match: KAA8538296.1 (hypothetical protein F0562_027881 [Nyssa sinensis])

HSP 1 Score: 319.7 bits (818), Expect = 2.6e-83
Identity = 177/261 (67.82%), Postives = 203/261 (77.78%), Query Frame = 0


Query: 7   SSSAPLLPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLRETKKND 66
           S++ PL+ +F GE Y +WSI+M TL +SQELWDLVE G+ D      +E+ RL+E KK D
Sbjct: 9   SAAQPLILVFKGEGYGFWSIRMMTLFKSQELWDLVEQGYAD-----PDEETRLKENKKKD 68

Query: 67  AKALFIIQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMT 126
           +KAL IIQQAVH++IFSRIAAATTSKQAWS LQKEFQGDSKVI+VKLQSLRRDFETL M 
Sbjct: 69  SKALMIIQQAVHDSIFSRIAAATTSKQAWSTLQKEFQGDSKVIVVKLQSLRRDFETLYMK 128

Query: 127 NGESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILS 186
           +GESIADFLSR   IVSQMR+YGEKISDET+VAKVLRSLTPKFDHVVAAIEE+KDLS+ S
Sbjct: 129 SGESIADFLSRVTTIVSQMRSYGEKISDETVVAKVLRSLTPKFDHVVAAIEESKDLSVFS 188

Query: 187 VDELMGSLQAHEARINRASERNEEKALQVKETTNNERENIHLAGRSRGRGGFR-----NF 246
            DELMGSLQAHE RI+R+ E+NEEKA QVK+      E+     R RGRGGFR       
Sbjct: 189 FDELMGSLQAHETRIDRSLEQNEEKAFQVKDIVTKAAESDSSISRGRGRGGFRGRGRGRG 248

Query: 247 HGSRDNSWRSDGQRQFNEQRN 263
            G+     R DGQRQ  EQRN
Sbjct: 249 RGNGRGRGRFDGQRQSGEQRN 264

[Close]

BLAST of CmoCh02G015640 vs. NCBI nr
Match: XP_022931772.1 (uncharacterized protein LOC111438050 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 7.2e-81
Identity = 185/283 (65.37%), Postives = 196/283 (69.26%), Query Frame = 0


Query: 21  YEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIEEKERLRETKKNDAKALFIIQQAVHET 80
           YEWWSIKMKTLLRSQELWDLVE+GFVD+ EPTIEE+E LRETKKND  ALFIIQQAVHET
Sbjct: 54  YEWWSIKMKTLLRSQELWDLVEYGFVDISEPTIEEEETLRETKKNDVNALFIIQQAVHET 113

Query: 81  IFSRIAAATTSKQAWSILQKEFQGDSKVIIVKLQSLRRDFETLLMTNGESIADFLSRTMA 140
           IFSRIAAATTSKQAWSIL KEF+GDSKV I                           TM 
Sbjct: 114 IFSRIAAATTSKQAWSILLKEFEGDSKVKIT--------------------------TMT 173

Query: 141 IVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEA-KDLSILSVDELMGSLQAHEA 200
           IVS MRTYGEKISDETIVAKVLRSLTPKFDHV   IEEA KDLSILSVDELMG LQAHE+
Sbjct: 174 IVSPMRTYGEKISDETIVAKVLRSLTPKFDHVATTIEEATKDLSILSVDELMGLLQAHES 233

Query: 201 RINRASERNEEKALQVK------------------ETTN--------------------- 260
           RIN++SERNEEK LQV+                  ETTN                     
Sbjct: 234 RINKSSERNEEKTLQVETDNNEGNERENIEKALQVETTNNEGNKRENIEKALQVETANNE 293

Query: 261 -NERENIHLAGRSRGRGGFRNFHGSRDNSWRSDGQRQFNEQRN 263
            NE+EN+ LA RS GR GFR+FHG RDN WRSDGQRQFNEQRN
Sbjct: 294 GNEKENVCLASRSCGREGFRSFHGDRDNRWRSDGQRQFNEQRN 310

[Close]

BLAST of CmoCh02G015640 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.9e-11
Identity = 52/184 (28.26%), Postives = 94/184 (51.09%), Query Frame = 0


Query: 21  YEWWSIKMKTLLRSQELWDLVEHGFVD------LLEPTI--EEKERLRETKKNDAKALFI 80
           YE W+   K+ L  Q LWD+V +G          L  TI  EE  + R+    DAKAL I
Sbjct: 17  YEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQI 76

Query: 81  IQQAVHETIFSRIAAATTSKQAWSILQKEFQGDSKVII-----VKLQSLRRDFETLLMTN 140
           +Q ++ +++F +  +A+++K  W +L+K   G+ +  I     V ++ L +  E L M +
Sbjct: 77  LQSSLTDSVFRKTLSASSAKDVWDLLRK---GNEQATIRRLEQVTIRRLEKQLEDLKMVD 136

Query: 141 GESIADFLSRTMAIVSQMRTYGEKISDETIVAKVLRSLTPKFDHVVAAIEEAKDLSILSV 192
            ES + +L + + I+ ++     + SD  I   V  +L+  FD + + +EE  D+  ++ 
Sbjct: 137 KESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTS 196

[Close]

BLAST of CmoCh02G015640 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-10
Identity = 32/93 (34.41%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 7  SSSAPL-LPIFNGEKYEWWSIKMKTLLRSQELWDLVEHGFVDLLEPTIE------EKERL 66
          S++ P  +P+     Y+ WS++MK +L + ++W++VE GF+   EP  E      +K+ L
Sbjct: 3  SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFI---EPENEGSLSQTQKDGL 62

Query: 67 RETKKNDAKALFIIQQAVHETIFSRIAAATTSK 93
          R+++K D KAL +I Q + E  F ++  AT++K
Sbjct: 63 RDSRKRDKKALCLIYQGLDEDTFEKVVEATSAK 92

The following BLAST results are available for this feature:

BLAST of CmoCh02G015640 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G015640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HHV7	8.0e-86	90.67	uncharacterized protein LOC111464223 OS=Cucurbita moschata OX=3662 GN=LOC1114642...	[more]
A0A5J5B7G1	1.3e-83	67.82	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_027881 PE=4 SV=1	[more]
A0A0V0IV83	4.9e-83	66.17	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A6J1EUM8	3.5e-81	65.37	uncharacterized protein LOC111438050 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]
A0A5J4ZYP9	1.2e-78	64.86	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_010614 PE=4 SV=1	[more]

BLAST of CmoCh02G015640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541813.1	1.2e-131	96.25	uncharacterized protein LOC111801847 [Cucurbita pepo subsp. pepo]	[more]
XP_023539449.1	3.9e-87	82.88	uncharacterized protein LOC111800103 [Cucurbita pepo subsp. pepo]	[more]
XP_022964086.1	1.7e-85	90.67	uncharacterized protein LOC111464223 [Cucurbita moschata]	[more]
KAA8538296.1	2.6e-83	67.82	hypothetical protein F0562_027881 [Nyssa sinensis]	[more]
XP_022931772.1	7.2e-81	65.37	uncharacterized protein LOC111438050 [Cucurbita moschata]	[more]

BLAST of CmoCh02G015640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	2.9e-11	28.26	Gag-Pol-related retrotransposon family protein	[more]
AT1G48720.1	4.2e-10	34.41	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 187..221
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 63..202 e-value: 1.1E-27 score: 96.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..263
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..271
None	No IPR available	PANTHER	PTHR35317:SF12	OS04G0629600 PROTEIN	coord: 7..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G015640.1	CmoCh02G015640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding