CmoCh02G015100 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G015100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionF-box/LRR-repeat protein
LocationCmo_Chr02: 8816905 .. 8817147 (+)
RNA-Seq ExpressionCmoCh02G015100
SyntenyCmoCh02G015100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCAAACCCCAATTCCTCCTTCCTCCTCCTCTTCCTCGTCACAATTCTCCTCACCACCGCCTCTCTCTCCGCCGCCGACACACAACAACCGCCGAATGATTCTCTCCAACCACCTACCTCTTCAACATTTTCACTCCCAAAGTCGCCGCCCGCCGTCGAGGACGTCATCGCACCCCAATACCACGCCGTTTCACTCCGCAAAGTCCCCGCCGGTCCAAACCCACTTCATAACTAA

mRNA sequence

ATGGCTTCTCCAAACCCCAATTCCTCCTTCCTCCTCCTCTTCCTCGTCACAATTCTCCTCACCACCGCCTCTCTCTCCGCCGCCGACACACAACAACCGCCGAATGATTCTCTCCAACCACCTACCTCTTCAACATTTTCACTCCCAAAGTCGCCGCCCGCCGTCGAGGACGTCATCGCACCCCAATACCACGCCGTTTCACTCCGCAAAGTCCCCGCCGGTCCAAACCCACTTCATAACTAA

Coding sequence (CDS)

ATGGCTTCTCCAAACCCCAATTCCTCCTTCCTCCTCCTCTTCCTCGTCACAATTCTCCTCACCACCGCCTCTCTCTCCGCCGCCGACACACAACAACCGCCGAATGATTCTCTCCAACCACCTACCTCTTCAACATTTTCACTCCCAAAGTCGCCGCCCGCCGTCGAGGACGTCATCGCACCCCAATACCACGCCGTTTCACTCCGCAAAGTCCCCGCCGGTCCAAACCCACTTCATAACTAA

Protein sequence

MASPNPNSSFLLLFLVTILLTTASLSAADTQQPPNDSLQPPTSSTFSLPKSPPAVEDVIAPQYHAVSLRKVPAGPNPLHN
Homology
BLAST of CmoCh02G015100 vs. ExPASy TrEMBL
Match: A0A5A7THA6 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002830 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 48/85 (56.47%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 1  MASPNPNSSFLLLFLVTILLTTASLSA-----ADTQQPPNDSLQPPTSSTFSLPKSPPAV 60
          MAS N     L LFL  ILLTT  L A     A   QP NDSL+PPT++TFS  + P AV
Sbjct: 1  MASQNSTPPSLFLFLFIILLTTTPLHAARRLPASAPQPENDSLRPPTTTTFSFAQPPAAV 60

Query: 61 EDVIAPQYHAVSLRKVPAGPNPLHN 81
          +D I  + + VSLRKVPAGPNPLHN
Sbjct: 61 DDQITSRNYGVSLRKVPAGPNPLHN 85

BLAST of CmoCh02G015100 vs. ExPASy TrEMBL
Match: A0A0A0KKA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 1  MASPN---PNSSFLLLFLVTILLTTASLSAA-----DTQQPPND--SLQPPTSSTFSLPK 60
          MAS N   PNS FL LF++ +L TT  L AA        QP ND  SL PPT+STFS  +
Sbjct: 1  MASQNSIPPNSLFLFLFMI-LLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQ 60

Query: 61 SPPAVEDVIAPQYHAVSLRKVPAGPNPLHN 81
           P AVED I  + + VSLRKVPAGPNPLHN
Sbjct: 61 PPAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

BLAST of CmoCh02G015100 vs. NCBI nr
Match: KAG6606114.1 (Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0

Query: 1  MASPNPNSSFLLLFLVTILLTTASLSAADTQQPPNDSLQPPTSSTFSLPKSPPAVEDVIA 60
          MASPNPNSSFLLLFLVTILLTTASLSAAD QQPPNDSLQPPTSSTFSLPKSPPAVEDVIA
Sbjct: 1  MASPNPNSSFLLLFLVTILLTTASLSAADAQQPPNDSLQPPTSSTFSLPKSPPAVEDVIA 60

Query: 61 PQYHAVSLRKVPAG 75
          PQ HAVSLRKVPAG
Sbjct: 61 PQNHAVSLRKVPAG 74

BLAST of CmoCh02G015100 vs. NCBI nr
Match: KAA0042782.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 4.3e-12
Identity = 48/85 (56.47%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 1  MASPNPNSSFLLLFLVTILLTTASLSA-----ADTQQPPNDSLQPPTSSTFSLPKSPPAV 60
          MAS N     L LFL  ILLTT  L A     A   QP NDSL+PPT++TFS  + P AV
Sbjct: 1  MASQNSTPPSLFLFLFIILLTTTPLHAARRLPASAPQPENDSLRPPTTTTFSFAQPPAAV 60

Query: 61 EDVIAPQYHAVSLRKVPAGPNPLHN 81
          +D I  + + VSLRKVPAGPNPLHN
Sbjct: 61 DDQITSRNYGVSLRKVPAGPNPLHN 85

BLAST of CmoCh02G015100 vs. NCBI nr
Match: KGN50125.1 (hypothetical protein Csa_000058 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 8.1e-11
Identity = 51/90 (56.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 1  MASPN---PNSSFLLLFLVTILLTTASLSAA-----DTQQPPND--SLQPPTSSTFSLPK 60
          MAS N   PNS FL LF++ +L TT  L AA        QP ND  SL PPT+STFS  +
Sbjct: 1  MASQNSIPPNSLFLFLFMI-LLTTTTPLHAARRPPTSAPQPENDSLSLHPPTTSTFSFTQ 60

Query: 61 SPPAVEDVIAPQYHAVSLRKVPAGPNPLHN 81
           P AVED I  + + VSLRKVPAGPNPLHN
Sbjct: 61 PPAAVEDQITSRNYGVSLRKVPAGPNPLHN 89

BLAST of CmoCh02G015100 vs. NCBI nr
Match: KAG6579492.1 (hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 0

Query: 1  MASPNPNSSFLLLFLVTILLTTASLSA-----ADTQQPPNDSLQPPTSSTFSLPKSPPAV 60
          MAS NP +S  L   + +L TTA LSA        Q P NDSL PPT+S FS  + P  V
Sbjct: 1  MASQNPITSLCLFLFIILLTTTAPLSAGRRLSTAEQHPENDSLPPPTTS-FSFIQPPTTV 60

Query: 61 EDVIAPQYHAVSLRKVPAGPNPLHN 81
          E+  A Q +AVS RKVPAGPNPLHN
Sbjct: 61 ENQAASQNYAVSHRKVPAGPNPLHN 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7THA62.1e-1256.47F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A0A0KKA93.9e-1156.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154870 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6606114.11.5e-2897.30Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma... [more]
KAA0042782.14.3e-1256.47F-box/LRR-repeat protein [Cucumis melo var. makuwa][more]
KGN50125.18.1e-1156.67hypothetical protein Csa_000058 [Cucumis sativus][more]
KAG6579492.13.4e-0954.12hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G015100.1CmoCh02G015100.1mRNA