CmoCh02G013730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G013730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	flagellar radial spoke protein 5 isoform X1
Location	Cmo_Chr02: 8140164 .. 8141871 (-)
RNA-Seq Expression	CmoCh02G013730
Synteny	CmoCh02G013730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTACGGTGTCAAATGGCAAGTGCTCAACGCAATATGGCAGTCCAGCGGAGGAAGGGGGAGAATCGACTGTGACAATAGGGTGGAGGCTATGCTCCGATATGCCGACGCCGGACTTTCAACCTTCGACATGGCCGACCAGTGTACGTAATGCAGTGCGTTAACGAACCAAAATCCACATATATTTAAAATTAAAATTATCTGTCAACGTTATCGTCTTCTTTTGGCATTTGTTTCCTTGTGCATTTCGTTGTCTGTGCGTTTCGATCCATAAACAGCTTTATTGTAGCCACTTAGCCTCTGTGCATGTCACACTTTTTTGAAAATTCCTGGTTTGATTCCATTTTGTCCTCTCTTTCCTGGTGGATGTAGTACCGAAGGAGCTCTGTTTTTGGCGGCTTGTATTTTCATTCCTTAGGATAAACGCCTCAGTAGAATGTGGAAGATAAGGATAAATCAGCCTCTGGTGCGTGGACTACGAAAATAAGCAAATCAAGGATAAACTCAAGTGTCATCCTCTTCTTTGATTCACTTAGCTTCACACAGTTAAAATGACCTAGTTGAATCAATATTTTTTTAGATTCATGCTTATTTGAAGAAACATGTGCATTTGCAAGAGAGATTACAGAATAGAAAATTGGAAATTCTTGTTTATATTCAATATTGCATATGCAGGCTTACAAAATGGGTGCCACCGTCGGTGAAGATGACTATTAGCTATGTCCGGGTGAGTATTAATATCTCACGAAAGAGAATGGATGTGTCTTCTTTTGATATGCTTCAATTCTACTGGAAAACAATTAACAGTTCTCTGTCATAACCTCATCTAATTTGAAGTTGTTCCCTAAGTTTGGTTGTGATGATGTACACTTAGAACCCTCAAGATCATGGTAGAAATATATTTTCTTTCTTATGGAACCTATAATGCACATTTTTCACAATGGATTCTCTCGTTCATACGGGAAAGCATTAGGCAAGGCTGTACTTCAATGCTGCTCTTGCCATCTTAGATTTGTGAAGTGAACTTTGAAAATTATAAGGCATGGATTGTTCTTGAAGGATCAATGAGAATCAATGAATTGAATCTATAATTTGACCATGGAACTCATCTAGGCAGTTATCAAGGTGCAGTTCCGACTTCCCTTTCATTTTTTTACTTGTCATACATATTGGATGTTGTAACGTAAACACTGTTTACTTCCTGTCATTTTTTTTAGGAAAAGATGCATGGTGAATCGTCTATGTTTCCTTAGGAACTTCCTTAAAACTTCAACTGTATCTAAGTAGATAATATCGTACTATTGTGGAAAATAATATCCCTGTTGTGTGCATTTGTCTCATTTTCTGAATTGACACATATCTTCGATGAAACTTACGAGGTTCAACACTCTATTGTTGATATGAGGCCTCAAGAAAGGGTAGCAGAGGTAAGATCACAGGAGTCGAACTTATTACGTATCAATCTGTCTCCCTCAATTTCATTTTACCAATTATCCCTATTCATAACGTAATTACTGTTCGATCATATCTTTTATTTGATTTTTCTACCCAAATTGCAATGTTTATTTAAAGCATGATTCTTAATGCAGGTATGGAACTGTAATGGTATGGAACTGGAACTGGACCTTCATTAAATACTCCCTCCCTGCAAAAGTACAAAAGGGTATGATTAATTATCTTTTATTTTTTACCTTAATGATATTTAT

mRNA sequence

ATGTATTACGGTGTCAAATGGCAAGTGCTCAACGCAATATGGCAGTCCAGCGGAGGAAGGGGGAGAATCGACTGTGACAATAGGGTGGAGGCTATGCTCCGATATGCCGACGCCGGACTTTCAACCTTCGACATGGCCGACCAGTGTACGCTTACAAAATGGGTGCCACCGTCGGTGAAGATGACTATTAGCTATGTCCGGGTATGGAACTGTAATGGTATGGAACTGGAACTGGACCTTCATTAAATACTCCCTCCCTGCAAAAGTACAAAAGGGTATGATTAATTATCTTTTATTTTTTACCTTAATGATATTTAT

Coding sequence (CDS)

ATGTATTACGGTGTCAAATGGCAAGTGCTCAACGCAATATGGCAGTCCAGCGGAGGAAGGGGGAGAATCGACTGTGACAATAGGGTGGAGGCTATGCTCCGATATGCCGACGCCGGACTTTCAACCTTCGACATGGCCGACCAGTGTACGCTTACAAAATGGGTGCCACCGTCGGTGAAGATGACTATTAGCTATGTCCGGGTATGGAACTGTAATGGTATGGAACTGGAACTGGACCTTCATTAA

Protein sequence

MYYGVKWQVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQCTLTKWVPPSVKMTISYVRVWNCNGMELELDLH

Homology

[Close]

BLAST of CmoCh02G013730 vs. ExPASy TrEMBL
Match: M5VYN0 (Aldo_ket_red domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G124700 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 62  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRQER 121

[Close]

BLAST of CmoCh02G013730 vs. ExPASy TrEMBL
Match: A0A2I4GKU2 (1-deoxyxylulose-5-phosphate synthase YajO OS=Juglans regia OX=51240 GN=LOC109008754 PE=4 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 63  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRRER 122

[Close]

BLAST of CmoCh02G013730 vs. ExPASy TrEMBL
Match: A0A6J0ZW23 (flagellar radial spoke protein 5 isoform X5 OS=Herrania umbratica OX=108875 GN=LOC110412616 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 71  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFIDRVRRER 130

[Close]

BLAST of CmoCh02G013730 vs. ExPASy TrEMBL
Match: A0A6J0ZWD4 (flagellar radial spoke protein 5 isoform X1 OS=Herrania umbratica OX=108875 GN=LOC110412616 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 71  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFIDRVRRER 130

[Close]

BLAST of CmoCh02G013730 vs. ExPASy TrEMBL
Match: A0A314Z9P2 (Flagellar radial spoke protein 5 isoform X1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28225 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.5e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 62  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRQER 121

[Close]

BLAST of CmoCh02G013730 vs. NCBI nr
Match: KAG7035942.1 (hypothetical protein SDJN02_02742, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 9.6e-28
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MYYGVKWQVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQCTLTKWVPPSVK 60
          MYYGV+WQVLN IWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQ  LTKWVPPSVK
Sbjct: 1  MYYGVEWQVLNGIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQ--LTKWVPPSVK 60

Query: 61 MTISYVR 68
          MTISYVR
Sbjct: 61 MTISYVR 65

[Close]

BLAST of CmoCh02G013730 vs. NCBI nr
Match: XP_017427911.1 (PREDICTED: L-glyceraldehyde 3-phosphate reductase-like isoform X1 [Vigna angularis] >BAT99509.1 hypothetical protein VIGAN_10095700 [Vigna angularis var. angularis])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMAD----------------QCT- 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                +C  
Sbjct: 64  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRCER 123

[Close]

BLAST of CmoCh02G013730 vs. NCBI nr
Match: XP_021278876.1 (flagellar radial spoke protein 5 isoform X1 [Herrania umbratica])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 71  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFIDRVRRER 130

[Close]

BLAST of CmoCh02G013730 vs. NCBI nr
Match: XP_022943505.1 (flagellar radial spoke protein 5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 63  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRRER 122

[Close]

BLAST of CmoCh02G013730 vs. NCBI nr
Match: PQQ06354.1 (flagellar radial spoke protein 5 isoform X1 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 84.3 bits (207), Expect = 5.1e-13
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG GRID D+ VEAMLRYADAGLSTFDMAD                    
Sbjct: 62  RVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRQER 121

[Close]

BLAST of CmoCh02G013730 vs. TAIR 10
Match: AT2G27680.1 (NAD(P)-linked oxidoreductase superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-15
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8   QVLNAIWQSSGGRGRIDCDNRVEAMLRYADAGLSTFDMADQC------------------ 67
           +VLN +WQ+SGG G+ID ++ V++MLRYADAGLSTFDMAD                    
Sbjct: 60  RVLNGMWQTSGGWGKIDRNDAVDSMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRRER 119

The following BLAST results are available for this feature:

BLAST of CmoCh02G013730 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5VYN0	2.5e-13	54.02	Aldo_ket_red domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G1247...	[more]
A0A2I4GKU2	2.5e-13	54.02	1-deoxyxylulose-5-phosphate synthase YajO OS=Juglans regia OX=51240 GN=LOC109008...	[more]
A0A6J0ZW23	2.5e-13	54.02	flagellar radial spoke protein 5 isoform X5 OS=Herrania umbratica OX=108875 GN=L...	[more]
A0A6J0ZWD4	2.5e-13	54.02	flagellar radial spoke protein 5 isoform X1 OS=Herrania umbratica OX=108875 GN=L...	[more]
A0A314Z9P2	2.5e-13	54.02	Flagellar radial spoke protein 5 isoform X1 OS=Prunus yedoensis var. nudiflora O...	[more]

BLAST of CmoCh02G013730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035942.1	9.6e-28	94.03	hypothetical protein SDJN02_02742, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_017427911.1	5.1e-13	54.02	PREDICTED: L-glyceraldehyde 3-phosphate reductase-like isoform X1 [Vigna angular...	[more]
XP_021278876.1	5.1e-13	54.02	flagellar radial spoke protein 5 isoform X1 [Herrania umbratica]	[more]
XP_022943505.1	5.1e-13	54.02	flagellar radial spoke protein 5 isoform X1 [Cucurbita moschata]	[more]
PQQ06354.1	5.1e-13	54.02	flagellar radial spoke protein 5 isoform X1 [Prunus yedoensis var. nudiflora]	[more]

BLAST of CmoCh02G013730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27680.1	2.6e-15	48.28	NAD(P)-linked oxidoreductase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43147	PROTEIN TAS	coord: 8..48
None	No IPR available	PANTHER	PTHR43147:SF1	OS09G0567350 PROTEIN	coord: 8..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G013730.1	CmoCh02G013730.1	mRNA