CmoCh02G013020 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G013020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNADH-ubiquinone/plastoquinone (Complex I) protein
LocationCmo_Chr02: 7733269 .. 7734601 (+)
RNA-Seq ExpressionCmoCh02G013020
SyntenyCmoCh02G013020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGAGCCATTTTCATGTGATATAAACCCTTTTCTTCTCACCCATATTCACACTCAACAACGCATAAGAGAAAGAAGAAAAACCCTATTTGCTGCTTGGGAGAGGGAAGGTGAAAGAAAGGTGAGTTTGAATTATAAGCTCAATTTTAATTTATTTTCTTAATTTTACTCGATCCCGATTCGAGTTAACTGGACTCGAACATTTGGTCTCTTGATTAAGAATATATGTCTTAACTAGTCGAAGGGAAACGGGACATGAGTTATGAATTTTACTTGAATTAAGCTTATATTTTGTGTTTATATGATATTTTTTTAGTTTATTTAATATTTTATTAGTGATGTTTTTACATAAATATGGTGTAATTAATTAAATAAAATAAAATAATTAATTAAAACACGGTTTTAAGTTTATGAATTTAATTTTATTTGTTAATGTAGTCTGAAACATGACACGTGCGAGGCATGCCTCGTGTTCCGTCTTTTTTCAGTCCATTTCAGAATCGTGTTGGGCTGTTTCTGTTTAATATCATCGAAAACGTTAATGGGCCGAGCCCAAATAAACTGCAATTTTTTTATATTTTTATTTTTATATAATTCCACTAATTTTAATATACAATTTTTAAAACTTTGTTTGAGCAATAATTGTTAGCGCATGTTAGCGCATTTTGGCGCATTTTAGAATGGTAATTTTGGGTGATTGAAGGATGGAGGTTATTTTTCTGTTGAGCTTGCATGAATGTTTAGATGATGTAATGATTGTGATACTCGAGCTATAGATTTTTCCCTAAACCAATGTTTTTCTTTTTTTCCTCAACTCCACTCGAAGCAAATTACTTTAGCGAATAAATGGATCCAAGCAGCTCGAAAATTGACCCATCAGGTGTGTCTTATTTATTAATTTTGACCTCTAAAAATATTACCTTTTCGAGTTCTTACATTTTTTTGTTTAATACAATATTAGAGTATACGATGTTTATTTGTGCATGTAGAATTCAAGCCTGCAGGTTCAGAACTCGAGGTCTTGCAGAAAGAGGTTGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGGAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAGGAAATGTGTAATTAATGACCATATACTATAATTATTAATGTCTATTTGCATGCTGTTTAATTATTATTAAAATCCAATTATTTATTTATTTATTTATTATTTAAAATTTGACCAACC

mRNA sequence

CTCTGAGCCATTTTCATGTGATATAAACCCTTTTCTTCTCACCCATATTCACACTCAACAACGCATAAGAGAAAGAAGAAAAACCCTATTTGCTGCTTGGGAGAGGGAAGGTGAAAGAAAGCAAATTACTTTAGCGAATAAATGGATCCAAGCAGCTCGAAAATTGACCCATCAGAATTCAAGCCTGCAGGTTCAGAACTCGAGGTCTTGCAGAAAGAGGTTGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGGAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAGGAAATGTGTAATTAATGACCATATACTATAATTATTAATGTCTATTTGCATGCTGTTTAATTATTATTAAAATCCAATTATTTATTTATTTATTTATTATTTAAAATTTGACCAACC

Coding sequence (CDS)

ATGGATCCAAGCAGCTCGAAAATTGACCCATCAGAATTCAAGCCTGCAGGTTCAGAACTCGAGGTCTTGCAGAAAGAGGTTGAGGCAAAAACGAAGAAAATTAAAGAGATGAAGAAGGAGATTGAAGGAATAAAAATGTGGTTGGAGGAGAAGAAAGCTTCTAGGGAAGAGATGGAAAGTTTAAAGAGATTATGTGAAGAATACAACAGCTTGAGAAAGGAATACTATGAAACATTGGGCAAACAGACAAGGGAATCCTAG

Protein sequence

MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSLRKEYYETLGKQTRES
Homology
BLAST of CmoCh02G013020 vs. ExPASy TrEMBL
Match: A0A6J1H234 (uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC111459736 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 12  EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL 71
           EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL 222

Query: 72  RKEYYETLGKQTRES 87
           RKEYYETLGKQTRES
Sbjct: 223 RKEYYETLGKQTRES 237

BLAST of CmoCh02G013020 vs. ExPASy TrEMBL
Match: A0A0A0KIA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.1e-14
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASRE 60
          MDPS+SKIDPSEF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMESLKRLCEEYNSLRKEYYETLGKQTRES 87
          EME  K LC +Y SLRKEY E   K+ RES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

BLAST of CmoCh02G013020 vs. ExPASy TrEMBL
Match: A0A2C9VRE5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G161800 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.9e-05
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 5  SSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKK--ASREEMESLK 64
          SS+   S   P  SELE LQKE E KT+KI+E+K +IE +K+ LE++K    +E+MES  
Sbjct: 4  SSRSSKSSSDP--SELEKLQKEHEEKTRKIQELKSQIEAVKLRLEKRKKEVPQEKMESFN 63

Query: 65 RLCEEYNSLRKEYYETLGKQ 83
           L E+YNS+R +YY  L ++
Sbjct: 64 NLTEKYNSMRAQYYALLAEK 81

BLAST of CmoCh02G013020 vs. ExPASy TrEMBL
Match: D7SNF6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00140 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKAS--REEM 60
          M+  SS I  +  K   SELE+LQK+ E KT KI+E+K++IE +K+ LE++K     E+M
Sbjct: 1  MEGGSSLIPQANSK--ASELEMLQKQHEEKTMKIQELKRQIESVKLRLEKRKKEIPEEKM 60

Query: 61 ESLKRLCEEYNSLRKEYYETLGKQTRES 87
          E+ K L E+YNSLR EY   L ++  E+
Sbjct: 61 EAFKVLSEKYNSLRDEYNALLAEKLGEN 86

BLAST of CmoCh02G013020 vs. ExPASy TrEMBL
Match: A0A438KG72 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_004605 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 18  SELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKAS--REEMESLKRLCEEYNSLRKEY 77
           SELE+LQK+ E KT KI+E+K++IE +K+ LE++K     E+ME+ K L E+YNSLR EY
Sbjct: 101 SELEMLQKQHEEKTMKIQELKRQIESVKLRLEKRKKEIPEEKMEAFKVLSEKYNSLRDEY 160

Query: 78  YETLGKQTRES 87
              L ++  E+
Sbjct: 161 NALLAEKLGEN 171

BLAST of CmoCh02G013020 vs. NCBI nr
Match: KAG7035874.1 (hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMES 60
          MDPSSSKIDPSEFKP G ELEVLQKEVEAKTKKIKEMKKEIE IKMWLEEKKASREEMES
Sbjct: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEKKASREEMES 60

Query: 61 LKRLCEEYNSLRKEYYETLGKQTRES 87
          LKRLCEE+NSLRKEYYETLGKQTRES
Sbjct: 61 LKRLCEEFNSLRKEYYETLGKQTRES 86

BLAST of CmoCh02G013020 vs. NCBI nr
Match: XP_022958532.1 (uncharacterized protein LOC111459736 [Cucurbita moschata])

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-29
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 12  EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL 71
           EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKKASREEMESLKRLCEEYNSL 222

Query: 72  RKEYYETLGKQTRES 87
           RKEYYETLGKQTRES
Sbjct: 223 RKEYYETLGKQTRES 237

BLAST of CmoCh02G013020 vs. NCBI nr
Match: KGN48117.1 (hypothetical protein Csa_003321 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MDPSSSKIDPSEFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASRE 60
          MDPS+SKIDPSEF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMESLKRLCEEYNSLRKEYYETLGKQTRES 87
          EME  K LC +Y SLRKEY E   K+ RES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

BLAST of CmoCh02G013020 vs. NCBI nr
Match: KAG8653043.1 (hypothetical protein MANES_06G161800v8 [Manihot esculenta] >KAG8653045.1 hypothetical protein MANES_06G161800v8 [Manihot esculenta])

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-05
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 18 SELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKK--ASREEMESLKRLCEEYNSLRKEY 77
          SELE LQKE E KT+KI+E+K +IE +K+ LE++K    +E+MES   L E+YNS+R +Y
Sbjct: 29 SELEKLQKEHEEKTRKIQELKSQIEAVKLRLEKRKKEVPQEKMESFNNLTEKYNSMRAQY 88

Query: 78 YETLGKQ 83
          Y  L ++
Sbjct: 89 YALLAEK 95

BLAST of CmoCh02G013020 vs. NCBI nr
Match: KAG8653044.1 (hypothetical protein MANES_06G161800v8 [Manihot esculenta])

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-05
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 18  SELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEKK--ASREEMESLKRLCEEYNSLRKEY 77
           SELE LQKE E KT+KI+E+K +IE +K+ LE++K    +E+MES   L E+YNS+R +Y
Sbjct: 41  SELEKLQKEHEEKTRKIQELKSQIEAVKLRLEKRKKEVPQEKMESFNNLTEKYNSMRAQY 100

Query: 78  YETLGKQ 83
           Y  L ++
Sbjct: 101 YALLAEK 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H2341.2e-29100.00uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC1114597... [more]
A0A0A0KIA69.1e-1458.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1[more]
A0A2C9VRE55.9e-0547.50Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G161800 PE=4 SV=... [more]
D7SNF61.3e-0445.45Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00140 PE=4 SV=... [more]
A0A438KG721.7e-0449.30Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_004605 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7035874.13.6e-3395.35hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022958532.12.4e-29100.00uncharacterized protein LOC111459736 [Cucurbita moschata][more]
KGN48117.11.9e-1358.89hypothetical protein Csa_003321 [Cucumis sativus][more]
KAG8653043.19.3e-0550.75hypothetical protein MANES_06G161800v8 [Manihot esculenta] >KAG8653045.1 hypothe... [more]
KAG8653044.19.3e-0550.75hypothetical protein MANES_06G161800v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 20..40
NoneNo IPR availableCOILSCoilCoilcoord: 44..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G013020.1CmoCh02G013020.1mRNA