CmoCh02G012900 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G012900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	heterogeneous nuclear ribonucleoprotein F-like
Location	Cmo_Chr02: 7688984 .. 7689715 (+)
RNA-Seq Expression	CmoCh02G012900
Synteny	CmoCh02G012900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATGCAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTATTTTCGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCGAATGAAGTTTTCGATGCCCGGGGTGGTTCGCCAAGAAGAACTGCACCCAGGTCGAAATTAAACGATGAGGTGAAAGACTTCGCCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAGGGAAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAAGACTCGAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCGTCATCCCAAGAAGAGCTAGACGAAGCTATCGCCAGAGGACGGTGA

mRNA sequence

ATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATGCAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTATTTTCGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCGAATGAAGTTTTCGATGCCCGGGGTGGTTCGCCAAGAAGAACTGCACCCAGGTCGAAATTAAACGATGAGGTGAAAGACTTCGCCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAGGGAAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAAGACTCGAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCGTCATCCCAAGAAGAGCTAGACGAAGCTATCGCCAGAGGACGGTGA

Coding sequence (CDS)

ATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTGCCGGGTTTATGTATAATGCAAGTCCTTATGCATATGTTGGTCAGCCACCACCGTTTCCCGTTGTCAGACTACGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTATTTTCGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAATAGGCAAAACATGGGCAGGAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCGGTAGCGAATGAAGTTTTCGATGCCCGGGGTGGTTCGCCAAGAAGAACTGCACCCAGGTCGAAATTAAACGATGAGGTGAAAGACTTCGCCGAACACACAGGTATATTACGTTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGGTTTTATCTTATCAGAAGACGTGATTCATCTAACACTGAATTCAGAGGGAAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAAGACTCGAAAGCAGCAATGTCCAAGGATAGAATGACACTAGGTAGCCGTTACATAGAGTTGTTCCCGTCATCCCAAGAAGAGCTAGACGAAGCTATCGCCAGAGGACGGTGA

Protein sequence

MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIARGR

Homology

[Close]

BLAST of CmoCh02G012900 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 73/199 (36.68%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 42  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 101
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 102 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGI 161
           +++R++MG RY+E+F+S+R E    +            + + P S   D   D     G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA--DSAND-----GF 131

Query: 162 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 221
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 222 RMTLGSRYIELFPSSQEEL 236
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CmoCh02G012900 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 73/199 (36.68%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 42  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 101
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 102 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGI 161
           +++R++MG RY+E+F+S+R E    +            + + P S   D   D     G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA--DSAND-----GF 131

Query: 162 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 221
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 222 RMTLGSRYIELFPSSQEEL 236
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CmoCh02G012900 vs. ExPASy Swiss-Prot
Match: Q5E9J1 (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 8.7e-27
Identity = 74/199 (37.19%), Postives = 115/199 (57.79%), Query Frame = 0


Query: 42  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 101
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 102 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGI 161
           +++R++MG RY+E+F+S+R E      + V    G +   TA     ND         G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTE-----MDWVLKHSGPNSADTA-----ND---------GF 131

Query: 162 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 221
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 222 RMTLGSRYIELFPSSQEEL 236
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CmoCh02G012900 vs. ExPASy Swiss-Prot
Match: Q9Z2X1 (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 72/199 (36.18%), Postives = 114/199 (57.29%), Query Frame = 0


Query: 42  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 101
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 102 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGI 161
           +++R++MG RY+E+F+S+R E    +            + + P S   D   D     G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA--DSAND-----GF 131

Query: 162 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 221
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 222 RMTLGSRYIELFPSSQEEL 236
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CmoCh02G012900 vs. ExPASy Swiss-Prot
Match: Q794E4 (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 72/199 (36.18%), Postives = 114/199 (57.29%), Query Frame = 0


Query: 42  VVRLRGLPFDCMETDVAEFFHGLDIVD----IIFVH-KNGKFTGEGFCVLGYPLQVDFAL 101
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  L     V  AL
Sbjct: 12  VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71

Query: 102 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGI 161
           +++R++MG RY+E+F+S+R E    +            + + P S   D   D     G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNSA--DSAND-----GF 131

Query: 162 LRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 221
           +RLRGLP+   K++I+ FF G  +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 222 RMTLGSRYIELFPSSQEEL 236
           +  +G RYIE+F SSQEE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of CmoCh02G012900 vs. ExPASy TrEMBL
Match: A0A6J1H2H4 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111459832 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 4.8e-137
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF
Sbjct: 16  MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 75

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 76  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 135

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL
Sbjct: 136 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 195

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA
Sbjct: 196 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 255

Query: 241 RGR 244
           RGR
Sbjct: 256 RGR 258

[Close]

BLAST of CmoCh02G012900 vs. ExPASy TrEMBL
Match: A0A6J1JXX1 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111490762 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 3.8e-134
Identity = 237/243 (97.53%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPGAGFMYN SPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF
Sbjct: 16  MGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 75

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDI+FVHK+ KFTGEGFCVLGYPLQVDFALQRNRQN+GRRYVEIFRSNRQEYYK
Sbjct: 76  FHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGRRYVEIFRSNRQEYYK 135

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL
Sbjct: 136 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 195

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAI 
Sbjct: 196 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIG 255

Query: 241 RGR 244
           RGR
Sbjct: 256 RGR 258

[Close]

BLAST of CmoCh02G012900 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRLRGLPFDCMETDV EF
Sbjct: 68  MGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEF 127

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 128 FHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 187

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRR+APRSKLNDEVKD AEHTG+LRLRGLPYSAGKDDILDFFKGF L
Sbjct: 188 AVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNL 247

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPSS EELDEAI+
Sbjct: 248 SEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAIS 307

Query: 241 RGR 244
           RGR
Sbjct: 308 RGR 310

[Close]

BLAST of CmoCh02G012900 vs. ExPASy TrEMBL
Match: A0A5D3BB71 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001040 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRLRGLPFDCMETDV EF
Sbjct: 109 MGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEF 168

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 169 FHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 228

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRR+APRSKLNDEVKD AEHTG+LRLRGLPYSAGKDDILDFFKGF L
Sbjct: 229 AVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNL 288

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPSS EELDEAI+
Sbjct: 289 SEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAIS 348

Query: 241 RGR 244
           RGR
Sbjct: 349 RGR 351

[Close]

BLAST of CmoCh02G012900 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.5e-130
Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRLRGLPFDCMETDV EF
Sbjct: 18  MGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEF 77

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 78  FHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 137

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRR+APRSKLNDEVKD AEHTG+LRLRGLPYSAGKDDILDFFKGF L
Sbjct: 138 AVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNL 197

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPSS EELDEAI+
Sbjct: 198 SEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAIS 257

Query: 241 RGR 244
           RGR
Sbjct: 258 RGR 260

[Close]

BLAST of CmoCh02G012900 vs. NCBI nr
Match: KAG7035864.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 496.9 bits (1278), Expect = 9.9e-137
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF
Sbjct: 49  MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 108

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 109 FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 168

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL
Sbjct: 169 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 228

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA
Sbjct: 229 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 288

Query: 241 RGR 244
           RGR
Sbjct: 289 RGR 291

[Close]

BLAST of CmoCh02G012900 vs. NCBI nr
Match: XP_022958677.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata] >KAG6605916.1 Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 496.9 bits (1278), Expect = 9.9e-137
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF
Sbjct: 16  MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 75

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 76  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 135

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL
Sbjct: 136 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 195

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA
Sbjct: 196 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 255

Query: 241 RGR 244
           RGR
Sbjct: 256 RGR 258

[Close]

BLAST of CmoCh02G012900 vs. NCBI nr
Match: XP_023534703.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.5 bits (1264), Expect = 4.2e-135
Identity = 240/243 (98.77%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPGAGFMYN SPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF
Sbjct: 16  MGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 75

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 76  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 135

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRRTAPR KLNDEVKDF EHTGILRLRGLPYSAGKDDILDFFKGFIL
Sbjct: 136 AVANEVFDARGGSPRRTAPRLKLNDEVKDFTEHTGILRLRGLPYSAGKDDILDFFKGFIL 195

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA
Sbjct: 196 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 255

Query: 241 RGR 244
           RGR
Sbjct: 256 RGR 258

[Close]

BLAST of CmoCh02G012900 vs. NCBI nr
Match: XP_022995127.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 487.3 bits (1253), Expect = 7.9e-134
Identity = 237/243 (97.53%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPGAGFMYN SPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF
Sbjct: 16  MGAKRQRIVDQGSSYYGTSPGAGFMYNTSPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 75

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDI+FVHK+ KFTGEGFCVLGYPLQVDFALQRNRQN+GRRYVEIFRSNRQEYYK
Sbjct: 76  FHGLDIVDILFVHKSDKFTGEGFCVLGYPLQVDFALQRNRQNLGRRYVEIFRSNRQEYYK 135

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL
Sbjct: 136 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 195

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAI 
Sbjct: 196 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIG 255

Query: 241 RGR 244
           RGR
Sbjct: 256 RGR 258

[Close]

BLAST of CmoCh02G012900 vs. NCBI nr
Match: TYJ96136.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 475.3 bits (1222), Expect = 3.1e-130
Identity = 230/243 (94.65%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           MGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRLRGLPFDCMETDV EF
Sbjct: 109 MGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFDCMETDVVEF 168

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           FHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK
Sbjct: 169 FHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 228

Query: 121 AVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFIL 180
           AVANEVFDARGGSPRR+APRSKLNDEVKD AEHTG+LRLRGLPYSAGKDDILDFFKGF L
Sbjct: 229 AVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKGFNL 288

Query: 181 SEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIA 240
           SED IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPSS EELDEAI+
Sbjct: 289 SEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAIS 348

Query: 241 RGR 244
           RGR
Sbjct: 349 RGR 351

[Close]

BLAST of CmoCh02G012900 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 349.0 bits (894), Expect = 3.1e-96
Identity = 175/280 (62.50%), Postives = 206/280 (73.57%), Query Frame = 0


Query: 1   MGAKRQRIVDQG--SSYYGTSPGAGFMYNASPYAYVG--QPPPFPVVRLRGLPFDCMETD 60
           MG KRQR++DQG    +YG  P +GFMYN  PY +V    PPPFP VRLRGLPFDC E D
Sbjct: 15  MGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFPAVRLRGLPFDCAELD 74

Query: 61  VAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQ 120
           V EFFHGLD+VD++FVH+N K TGE FCVLGYPLQVDFALQ+NRQNMGRRYVE+FRS +Q
Sbjct: 75  VVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTKQ 134

Query: 121 EYYKAVANEVFDAR---------------------------------GGSPRRTAPRSKL 180
           EYYKA+ANEV ++R                                 G SPRR   R++ 
Sbjct: 135 EYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRARS 194

Query: 181 NDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEF 240
           +D+ K+  EHTGILRLRGLP+SAGK+DILDFFK F LSED +H+T+N EGRP+GEAFVEF
Sbjct: 195 SDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEF 254

Query: 241 ANEQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIARGR 244
            N +DS+AAM KDR TLGSRYIELFPSS EEL+EA++RGR
Sbjct: 255 RNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of CmoCh02G012900 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.2 bits (565), Expect = 4.4e-58
Identity = 114/247 (46.15%), Postives = 165/247 (66.80%), Query Frame = 0


Query: 1   MGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRLRGLPFDCMETDVAEF 60
           +G+KRQR++ Q + Y     G     +  P+ Y G    FPVVRLRGLPF+C + D+ EF
Sbjct: 16  VGSKRQRMM-QSNPYLAVGTGP---TSFPPFGYAG---GFPVVRLRGLPFNCADIDIFEF 75

Query: 61  FHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYK 120
           F GL+IVD++ V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR ++Q+YY 
Sbjct: 76  FAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCSKQDYYN 135

Query: 121 AVANE----VFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYSAGKDDILDFFK 180
           AVA E     ++ R   P     R+K   E K+  E+T +L++RGLPYS  K  I++FF 
Sbjct: 136 AVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQIIEFFS 195

Query: 181 GFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSQEELD 240
           G+ + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELFP+++EE  
Sbjct: 196 GYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPTTREEAR 254

Query: 241 EAIARGR 244
            A AR R
Sbjct: 256 RAEARSR 254

[Close]

BLAST of CmoCh02G012900 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.8 bits (364), Expect = 8.9e-35
Identity = 71/158 (44.94%), Postives = 108/158 (68.35%), Query Frame = 0


Query: 90  LQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANE----VFDARGGSPRRTAPRSKLND 149
           +QV+ ALQR+R NMGRRYVE+FR ++Q+YY AVA E     ++ R   P     R+K   
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60

Query: 150 EVKDFAEHTGILRLRGLPYSAGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFAN 209
           E K+  E+T +L++RGLPYS  K  I++FF G+ + +  + +    +G+ +GEAFVEF  
Sbjct: 61  E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 210 EQDSKAAMSKDRMTLGSRYIELFPSSQEELDEAIARGR 244
            ++++ AM+KD+M++GSRY+ELFP+++EE   A AR R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of CmoCh02G012900 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.2e-04
Identity = 29/90 (32.22%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 144 NDEVKDFAEHTGILRLRGLPYSAGKDDILDFFKGF-ILSEDVIHLTLNSEGRP-SGEAFV 203
           +D+V D     G L + GLPYS  ++++++ F  F  +SE  +HL L+ + R   G AFV
Sbjct: 220 SDDVLD----AGRLFVHGLPYSTTEEELMEHFSKFGDISE--VHLVLDKDTRSCRGMAFV 279

Query: 204 EFANEQDSKAAMSK-DRMTLGSRYIELFPS 231
            +   + +K AM K D++    R + + P+
Sbjct: 280 LYLIPESAKMAMDKLDKLPFQGRTLHILPA 303

The following BLAST results are available for this feature:

BLAST of CmoCh02G012900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52597	1.3e-27	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	1.3e-27	36.68	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q5E9J1	8.7e-27	37.19	Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 S...	[more]
Q9Z2X1	1.5e-26	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=...	[more]
Q794E4	1.5e-26	36.18	Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus OX=10116 GN=Hnrnp...	[more]

BLAST of CmoCh02G012900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2H4	4.8e-137	100.00	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JXX1	3.8e-134	97.53	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7TH86	1.5e-130	94.65	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A5D3BB71	1.5e-130	94.65	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]
A0A0A0L205	1.5e-130	94.65	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]

BLAST of CmoCh02G012900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035864.1	9.9e-137	100.00	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]
XP_022958677.1	9.9e-137	100.00	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata] >KAG6605916....	[more]
XP_023534703.1	4.2e-135	98.77	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita pepo subsp. pepo]	[more]
XP_022995127.1	7.9e-134	97.53	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]	[more]
TYJ96136.1	3.1e-130	94.65	heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh02G012900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	3.1e-96	62.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	4.4e-58	46.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	8.9e-35	44.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08695.1	8.2e-04	32.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 42..111 e-value: 0.094 score: 15.7 coord: 156..228 e-value: 2.2E-8 score: 43.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 158..225 e-value: 4.1E-9 score: 36.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 155..243 score: 10.820684
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 40..125 e-value: 6.8E-20 score: 73.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 140..242 e-value: 4.3E-29 score: 102.6
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..243
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 1..243
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 156..228 e-value: 2.14475E-28 score: 100.709
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 42..111 e-value: 2.79353E-21 score: 82.6051
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 152..237
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 34..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G012900.1	CmoCh02G012900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding