CmoCh02G012890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G012890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	Cmo_Chr02: 7683929 .. 7685026 (-)
RNA-Seq Expression	CmoCh02G012890
Synteny	CmoCh02G012890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCTTTCTTCCTTGTGGGTACAACACCGGTGGTGGACTCATCGCCGGTTACCAATATGAGTCTCACAACTGGTGGACATTTGGTTCTGCCCACCAAATCTAAGCTTAAGAATCATTTGGCCGTATCATCATCGGTGAGTTCGTTCGTGAATTCCGGCGGCCAGTGGCGGCTCTCCGCCGTTGGTGGCCACCGGAGGAATCTACGGAGGAAACGCAGGCTTGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGGTATGAACAGAACATGATATGACTGTTCTTGGATGGAAAATTTGTTGATGTTTTGATTTCCACGTGCAGCAAATACAGAATTACTTCACATTCAAAGCTGTGAAGACAGTTCTTAATCAGCTTTATGAGATGAATCCTACCCAATACAGATGGTTTTATGAGTAACTACTGAACCCTTTCACCTCACTTTCCTTAACTTCCTCGAAATCAATATAATCCACAATTTCTCTGTTTCTACCTCGACAGTTTTGTTGTGAATCACAAGCCTGGAGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGTATTATTACGACCTCCTCGGCTCAGATCAAAAGTTTAAAGGTTCGAATCTTTTATGTCTAAACAGAGATGATTATGATTAACAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACGAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAAGATTACAATTTCTTTGGTTGGAATCACTTTAAGAACACATATTGACAGTGATTTTCTGATATTGCGTAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTAGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGATGAGTAGAGGTTTTAGAAGATTGGCAGACTAGGAGCTACTACATTGTTTTGTTCTCTTTTCTTTTCCTGTGGTTTCATTCTTATTCATATTGTTTACACCAACTAATAAGAATTCTTACGTCCAATATTACAAAAACTGTGAATGTATGTATCGATCTTATTGAACATGTTGCTATCGACCCACGAG

mRNA sequence

ATGGTGGGAGCTTTCTTCCTTGTGGGTACAACACCGGTGGTGGACTCATCGCCGGTTACCAATATGAGTCTCACAACTGGTGGACATTTGGTTCTGCCCACCAAATCTAAGCTTAAGAATCATTTGGCCGTATCATCATCGGTGAGTTCGTTCGTGAATTCCGGCGGCCAGTGGCGGCTCTCCGCCGTTGGTGGCCACCGGAGGAATCTACGGAGGAAACGCAGGCTTGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTACTTCACATTCAAAGCTGTGAAGACAGTTCTTAATCAGCTTTATGAGATGAATCCTACCCAATACAGATGGTTTTATGATTTTGTTGTGAATCACAAGCCTGGAGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACGAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTAGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGATGAGTAGAGGTTTTAGAAGATTGGCAGACTAGGAGCTACTACATTGTTTTGTTCTCTTTTCTTTTCCTGTGGTTTCATTCTTATTCATATTGTTTACACCAACTAATAAGAATTCTTACGTCCAATATTACAAAAACTGTGAATGTATGTATCGATCTTATTGAACATGTTGCTATCGACCCACGAG

Coding sequence (CDS)

ATGGTGGGAGCTTTCTTCCTTGTGGGTACAACACCGGTGGTGGACTCATCGCCGGTTACCAATATGAGTCTCACAACTGGTGGACATTTGGTTCTGCCCACCAAATCTAAGCTTAAGAATCATTTGGCCGTATCATCATCGGTGAGTTCGTTCGTGAATTCCGGCGGCCAGTGGCGGCTCTCCGCCGTTGGTGGCCACCGGAGGAATCTACGGAGGAAACGCAGGCTTGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTACTTCACATTCAAAGCTGTGAAGACAGTTCTTAATCAGCTTTATGAGATGAATCCTACCCAATACAGATGGTTTTATGATTTTGTTGTGAATCACAAGCCTGGAGATGGGAAGCGTTTCATCCGCACCCTCGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACGAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTAGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGATGAGTAG

Protein sequence

MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRLSAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERLMETVIWPSDE

Homology

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BLAST of CmoCh02G012890 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-52
Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVD--SSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQW 60
           MV A+F+VG +PV+D  SSP   +   T G +    + K+          SSF  S   +
Sbjct: 1   MVSAWFVVG-SPVMDSSSSPCLCLDAHTTGTI---RRKKILGKARNLELGSSFTGSRIVF 60

Query: 61  RLSAVGGHR-RNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMN 120
           RLS     R  N + K+ L+++ + AG Y+D+F DV+ QI NYFT+KAV+TVL+QLYEMN
Sbjct: 61  RLSPKRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMN 120

Query: 121 PTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKE 180
           P QY WFY+ ++ ++P DGKRF+R L KE Q+LAERVM+TRLHLY KW+KKCDH +IY+E
Sbjct: 121 PPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQE 180

Query: 181 ISDENLELMRERLMETVIWPSDE 201
           ISDENL LMRERLMETVIWPSD+
Sbjct: 181 ISDENLALMRERLMETVIWPSDD 199

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BLAST of CmoCh02G012890 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-07
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 92  DVKMQIQNYFTFKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLA 151
           D    +Q+Y T++A++TVL QL E NP    W ++F    K  DG+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 152 ERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERL 191
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-IAEFLPEMVVTGIQQANMEKRRQHL 105

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BLAST of CmoCh02G012890 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 92  DVKMQIQNYFTFKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLA 151
           D    +Q+Y T++A+ TVL QL E NP    W + F V  K  DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 152 ERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERL 191
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-VAEFLPEMVRSGIQQANMEQRRQHL 105

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BLAST of CmoCh02G012890 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 99  NYFTFKAVKTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTR 158
           +Y T++AV+TV+ QL E +P +  W + F       DG+R++  L +E+ DL  R++  R
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVR 75

Query: 159 LHL 162
            HL
Sbjct: 76  EHL 78

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BLAST of CmoCh02G012890 vs. ExPASy TrEMBL
Match: A0A6J1K3B1 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490774 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.8e-109
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60
           MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL
Sbjct: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60

Query: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120
           SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ
Sbjct: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120

Query: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180
           YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD
Sbjct: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180

Query: 181 ENLELMRERLMETVIWPSDE 201
           ENLELMRERLMETVIWPSDE
Sbjct: 181 ENLELMRERLMETVIWPSDE 200

[Close]

BLAST of CmoCh02G012890 vs. ExPASy TrEMBL
Match: A0A6J1H2Z6 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459633 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 7.8e-109
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60
           MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL
Sbjct: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60

Query: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120
           SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ
Sbjct: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120

Query: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180
           YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD
Sbjct: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180

Query: 181 ENLELMRERLMETVIWPSDE 201
           ENLELMRERLMETVIWPSDE
Sbjct: 181 ENLELMRERLMETVIWPSDE 200

[Close]

BLAST of CmoCh02G012890 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.0e-84
Identity = 167/214 (78.04%), Postives = 180/214 (84.11%), Query Frame = 0


Query: 1   MVGAFFLVGTTPV---------VDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSV--- 60
           MVGA  + G   +         +DSSPVTNMSL + G LVLP +SK K+HLAVS  V   
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSGGQWRLSAVGGH--RRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAV 120
           SSFVNSG +W+LSA GGH  RRN RR RRLV+ NEFAGQYE+SFDDVKMQI NYFT+KAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDE 201
           KKCDHAEIYKEISDENLELMRERLMETVIWPSD+
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of CmoCh02G012890 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.1e-84
Identity = 169/214 (78.97%), Postives = 182/214 (85.05%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVV---------DSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSV--- 60
           MVGA F+VG  PVV         DSSPVTNMSL +GG LVL  KSK K++L VS SV   
Sbjct: 1   MVGALFVVG-APVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLR 60

Query: 61  SSFVNSGGQWRLSAVGGH--RRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAV 120
           SSFVN G +W+LSA GG   +RN RR RRLV+ NEFAGQYEDSFDDVKMQIQNYFT+KAV
Sbjct: 61  SSFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDE 201
           KKCDHAEIYK ISDENLELMRERLMETVIWPSD+
Sbjct: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CmoCh02G012890 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.9e-83
Identity = 169/214 (78.97%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVV---------DSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSV--- 60
           MVGA F+VG  PV+         DSSPVTNMSL +GG LVL  KSK K++  VS SV   
Sbjct: 1   MVGALFVVG-APVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLR 60

Query: 61  SSFVNSGGQWRLSAVG--GHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAV 120
           SSFVN G +W+LSA G    RRN RR RRLVI NEFAGQYEDSFDDVKMQIQNYFT+KAV
Sbjct: 61  SSFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDE 201
           KKCDHAEIYKEISDENLELMRERLMETVIWPSD+
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of CmoCh02G012890 vs. NCBI nr
Match: XP_022958398.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >XP_022995145.1 chaperonin-like RbcX protein 2, chloroplastic [Cucurbita maxima] >KAG6605915.1 Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60
           MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL
Sbjct: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60

Query: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120
           SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ
Sbjct: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120

Query: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180
           YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD
Sbjct: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180

Query: 181 ENLELMRERLMETVIWPSDE 201
           ENLELMRERLMETVIWPSDE
Sbjct: 181 ENLELMRERLMETVIWPSDE 200

[Close]

BLAST of CmoCh02G012890 vs. NCBI nr
Match: XP_023534118.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400.6 bits (1028), Expect = 8.0e-108
Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60
           MVGAFFLV TTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL
Sbjct: 1   MVGAFFLVATTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60

Query: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120
           SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ
Sbjct: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120

Query: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180
           YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD
Sbjct: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180

Query: 181 ENLELMRERLMETVIWPSDE 201
           ENLELMRERLMETVIWPSDE
Sbjct: 181 ENLELMRERLMETVIWPSDE 200

[Close]

BLAST of CmoCh02G012890 vs. NCBI nr
Match: KAG7035863.1 (Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60
           MVGAFFLV TTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL
Sbjct: 1   MVGAFFLVVTTPVVDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQWRL 60

Query: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120
           SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ
Sbjct: 61  SAVGGHRRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMNPTQ 120

Query: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180
           YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD
Sbjct: 121 YRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISD 180

Query: 181 ENLELMRERLMETVIWPSDE 201
           ENLELMRERLMETVIWPSDE
Sbjct: 181 ENLELMRERLMETVIWPSDE 200

[Close]

BLAST of CmoCh02G012890 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.3 bits (830), Expect = 7.3e-85
Identity = 168/214 (78.50%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MVGAFFLVGTTPV---------VDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSV--- 60
           MVGA F+ G   +         +DSSPVTNMSL + G LVLP +SK K+HLAVS  V   
Sbjct: 1   MVGALFVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSGGQWRLSAVGGH--RRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAV 120
           SSFVNSG +W+LSA GGH  RRN RR RRLV+ NEFAGQYE+SFDDVKMQI NYFT+KAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDE 201
           KKCDHAEIYKEISDENLELMRERLMETVIWPSD+
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of CmoCh02G012890 vs. NCBI nr
Match: XP_022944576.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 321.2 bits (822), Expect = 6.2e-84
Identity = 167/214 (78.04%), Postives = 180/214 (84.11%), Query Frame = 0


Query: 1   MVGAFFLVGTTPV---------VDSSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSV--- 60
           MVGA  + G   +         +DSSPVTNMSL + G LVLP +SK K+HLAVS  V   
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNSGGQWRLSAVGGH--RRNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAV 120
           SSFVNSG +W+LSA GGH  RRN RR RRLV+ NEFAGQYE+SFDDVKMQI NYFT+KAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYDFVVNHKP DGKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDE 201
           KKCDHAEIYKEISDENLELMRERLMETVIWPSD+
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of CmoCh02G012890 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-53
Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = 0


Query: 1   MVGAFFLVGTTPVVD--SSPVTNMSLTTGGHLVLPTKSKLKNHLAVSSSVSSFVNSGGQW 60
           MV A+F+VG +PV+D  SSP   +   T G +    + K+          SSF  S   +
Sbjct: 1   MVSAWFVVG-SPVMDSSSSPCLCLDAHTTGTI---RRKKILGKARNLELGSSFTGSRIVF 60

Query: 61  RLSAVGGHR-RNLRRKRRLVISNEFAGQYEDSFDDVKMQIQNYFTFKAVKTVLNQLYEMN 120
           RLS     R  N + K+ L+++ + AG Y+D+F DV+ QI NYFT+KAV+TVL+QLYEMN
Sbjct: 61  RLSPKRVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMN 120

Query: 121 PTQYRWFYDFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKE 180
           P QY WFY+ ++ ++P DGKRF+R L KE Q+LAERVM+TRLHLY KW+KKCDH +IY+E
Sbjct: 121 PPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQE 180

Query: 181 ISDENLELMRERLMETVIWPSDE 201
           ISDENL LMRERLMETVIWPSD+
Sbjct: 181 ISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of CmoCh02G012890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	2.2e-52	54.68	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	2.8e-07	34.34	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	4.8e-07	34.34	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q8DIS6	1.8e-06	36.51	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]

BLAST of CmoCh02G012890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3B1	7.8e-109	100.00	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1H2Z6	7.8e-109	100.00	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1FUS7	3.0e-84	78.04	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0KX19	5.1e-84	78.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A5A7TJ10	1.9e-83	78.97	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of CmoCh02G012890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958398.1	1.6e-108	100.00	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata] >XP_022995145...	[more]
XP_023534118.1	8.0e-108	99.50	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7035863.1	1.8e-107	99.50	Chaperonin-like RbcX protein 2, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_023512052.1	7.3e-85	78.50	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022944576.1	6.2e-84	78.04	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita moschata]	[more]

BLAST of CmoCh02G012890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	1.6e-53	54.68	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 95..193 e-value: 5.8E-20 score: 71.6
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..200
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 79..200 e-value: 1.3E-47 score: 162.7
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 85..200
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G012890.1	CmoCh02G012890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone