CmoCh02G012430 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G012430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsplicing factor 1-like isoform X2
LocationCmo_Chr02: 7465999 .. 7472596 (+)
RNA-Seq ExpressionCmoCh02G012430
SyntenyCmoCh02G012430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCAATTTCCCGGAGCACTTTGTGTGCTCTCGTAAGTGCGTCAATTCTTCATTGTGGATTCAGTTTTGAAGAACGCAGCGGTTCAGGTACTTTCATCTCTCTACTGTTTGGTTTTTGTTTGGTTCTTGAGACGACTTGGGGCAAGGGAAAGAAAATGGACTTCTAATTGACAAATTCTTAGCCCCCTTGTCGCCGGTGCAACCTCAAAATAAGCTACAAATTTGTGTTTTGCATGATCATTCTTTATTAAGCCTTGTAATTCAATGGGAGCTAGAACTTTGTTGTCTTTGAGACCAGCAGCTAAGATTTGCAATCTGTGGGGTGGAGGTGTTTTCTTGTAAAGATATCATTATCTAACTTCATGAATCACGATCAGGAATAATATCGTGTTCTAGAGAATGCGTCAATGTGATTATAATATTGTGTGTGCTATGCGGACAAAAATGGTTGTTCAGTGTAAATCGAAGCACAATCGAGTTTCCTTGCAGTGGCAGGTTCAGCTTCGACTGGTAAATAGGCAATCACTGCACTTTAGTTGGCTAAGGACATTATTTGTTGGAAACATCTGGGATTTTTTGTTCTGTTTTGTTTTGTTTTGTTTTTTGTTGTATCCACCAGGGATCTGAGTTTTTCTCTCCTCATCATGATGAGAAGAACACATGAAAGTTATATATATTTATGGCAAGCTCAGCTATTTACATTTATCAATTTTCTAAGCATCAAGCTAGAATTTTTCCCTGGATAGTTACCCCCTCCCTATTACCCACATTTCATTCTTTGAACCGTTATAATATATTATTATACTCGGGGTCATGCAAGTTTCTCGTTCCTTTGTTCTATTGTTCATGAATACTTTACACAGGGTGTAAAATGGCAATTACAAGTTTATTTGTACTTGAGGTTTTCTCACATAGGATATATCTTTTGTTTTTTAGGTGATTGGAGAACAATATGAGTGCAGAGGTTGAAAAGACGTCGCATATTGAACCGGGAAATGCAAAGATGTCTGGAGCAACTAATTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTTTGCAGCGAAGACTGGGTTTGTTATACCAAAAAACAAGCTTTCAGGATCTTTGGTTCCCGTCTTTCGAGTGAACAAGAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAAATGAGAAACAGTCTCAAAGAAAAACAAAGTGGGGTCCTGATCTAACACAGGATTCTGCAGTTAGAAGGGGGAGGCTCATAGCTTATCAGGTATTTGTGGAGCACTCTCTCTTTTCCTTTTCTATGTATCCATGTATCCGTGCCACGTGTTAAAGGCACAACTCAAAGTCAATAGAAAATGCGTTTATTTTGTTTATTTTGTGGAGCTTTTGAAGTGTCACACTTCCCTATCACTGTGTATCTTGGATAAATTCCTACTCATATCTCAAGGTATAATATGGGATAAAATCCTTCTCGTATCTCAATCCTAAGCCTTTTCTCTTCTAATATTTGGGATGATGTTTTGCGTTATTTGTATCATTTAGGTCAGTTATTGCTTTACCAGTAACTTAATGTTGAGATGCCAGTCAACATGGCTTGAAATAAGATCATCTATGGATGAAGAAAAGGAGATTTGTTAACTTCCTCTCTGAACACATATTTCTTTCTTTTTTCTTTGAATTGATATGTTATTCTTTTGAAGCCATCTTTGACCATTTTCATACAGTTGAATATTGTCAATTTGCTACCATTGAATTTCCCCTTTTTCTTATTTGGTGCTAAAATGTTAGTCTTCTGTGTGACTGTTTCGCATGGAACATTCCCATCCAGGTGCTACTTAGTGACATAACTGCCTCTATGGTTATACATATTTTGAGCAGACTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACCCTGGAGGTTCCAGAGACACAAGATTCAGCAATAGAAGCTGAGAATGTTGATGATTCCCCGGGATCCCAAGCAACTAATGAGGTAAATTCAGAGCTCGTATTACTTTCAGGGACAGTTTTTTCTCTGGATGATTTTGATATATGCCTTAATCATAATATACAGGTGCGAAACAACGAACTTTTGGAGATTGAGAAACGTGAAGTTATTGGTATGCTTAGTTAGTGACTTGTTTCTATTATGCCCTCAATTTGAGTTTTGAATGCTATCTATTGAATTTTTTTTATCATTATTATACAGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGAAAGCAGACAAGTTACTTCTCCCAGTAAGATTGGTCTCGGATTACCTTTCTTCCGTGCTTGGTGATGCCATAGAAACGAGAAACATATTAACCTCTTATTTTATTTACTCTTTCCCTTACTGATAGCTATATGTTTTAAGTCTCATTCTTTTTATAACCATGGTTGGAAGGGTATCTAATATAGCACTGTTATTCTTATTTTCACAAGTCAATCATGATCTTTTAATACCCCTATTACATGAGGATCACGATCATTCACTTGATTTATAAATAAAATTATGTTAGGAGATTGTTTATTTTCCTTCACTTAATGGAATATGTATATTGTGTATTTAGTGATGTTATTTGATGTTAAAGTTGAACATTCTACCTTCTAAGGAGGCTCCCTAGGATTTGAGCCCATGAACTATTGATTATCATTAAGGACATTTTATAACGATGCTTAAGCTTAGCTTAGGTTTATTTCTAAGAACTTATAATTGAACAATCTGTTGCAAAAAAAAAAAAAAAAAAAAAATACTAAAGAATGCTAGTGCATGTGCCTCTAACAAGTAATAAAGTGATAAGAAAGAGTATTGATAAGGATTAATTGTTGCTACCAATTTATTGCTGCAACCTTCATTTGATTCTGATAGTCGACATAGACCTCATGAGACCTGCCCACCATTACAGCTGATATTTCCTTGTCTTGGGAAGAAAGACTTTGGTTTTAAGTGGTGTTCCTAAATTTGAAATTGCATCAAGATTGTTTAGTGCTTATCCTTATTAGTAGTAGACCAAGGGGCAGGATTCTAGCTTCTAGAGGGATCCGTTATCTTCCTTTTGGTGGTGGATTTCCTTAGGAGATTGATCTTGCAGGGGTAGGTAGGTGCAGTTGATGGTCTTTAGCTTGGTAGGAATAGTTTACACATATTCTACTTATAGTTTGCATGTGATACTATCTTTCTTGCTTGAGCAATGAGGATTTCTTTCTTTATCTCAATCGGATTTTGTCCTTTTTTGAGTCGATTTTTGAGCTGAAGATTAATAGAGGTCAATTTTCTGTTATTGGAGTTAATTGTGATCAAGATAGGCTGTCCAGGTGAGCTTCCTTTTTGGGTTATGAGATTGGTGTTCTCCTCTAGTCATTTTTGGTGCTTCCTCTATGGCATAACTCTGTGTTTGGAGTTTGATCTAACAACCTTATTGAATAACAAGACTTTTAGATCTCAATTATCCAAGAATCTAAAAAACGATTAGGAAACAATCCAAGGAAAAGTTTTGGAACAGATTACCTTGATGATCAAGATCAAGAGTAAAGAAAACTCGTGATTCGAATCACTCCACAAGGTAGCCTGATCAAGACTACTCGAATAACTCTAGTATGTAAATCTAAACACAAGAAATGTAAGGAAACAAGTTCATGTTTTGCTAATACACAGGAGAGTTTTGCTCAGTCATCCATTCAGTTCCCTACATTTATTAGTTATAAGTTATTATTTCCATAACCATGTGGAATTTACCTTGCAGGTTAAAGAATATCCTGATTACAACTTTATTGGCTTAATATACGGCCCCAGTGGGGAAAATCAAAAGCGATTAGAAAAGGTAAGAAAATCATTTTAGACTAGACTATGAAATGTTTTGCTAAAGATTATCTCCCTTTTCTTCAACATTTAACGTATATTTCGACTTATTAAACGTGTCAGGAAACTGGAGCCAAAATACAAATTTGTGGTATTAAACCTGGGACAGGTGAAAAGGTGATCCCTTTGACTCATGAAATTCATGATATGGTCTATACCAGTTATACACAGTCTGTCGTGTTATCTTGTTCTAATCTTTTATTCTTACTGCAAAATATATGAGCACCTCAGGGCTTTTTAGCTGTCAAGAATCTCTTCAGAAGTCTCTTTTACTTTTTATTTGTTCCAAAGCTCACTAGATCAACCTGTGGCTGTTTATTTTGTCTAGAAGTTAGAGTCTGTTCTGTGAGAATGGCTCTGAAGTTTGAAGGCACCTCAGGGTTCTTTTAATTTTGCCGAGGTTTAAAACTTGAGGGAGTTGTGAACTATAGTTTTTGTTAGATATTGTCTTCTTTGGGTTTTCCCTTCCGAGCTTCCCTTCAAAGTTTTAAAACACGTCCGCTAGGGAGAGGTTTCCACACCTTTATAAAGAATGCTTAGTTCCCCTCTTCAACCGATGTGGGATCCACAATCCATCTACTTTGGGGCCAGCGTCCTTGCTGGCACTCGTTTCCCTCTCCAATCAATATGAGATCTCACAGTTTTACTCTTTGTATCTCCCTGCCCCTCTTCTTGCAGGACGAAATTAAACCAACTGATGGACACGAAGCTCAGAGTGGTTATGAAGAGCTGTATGTTTGCATGTCAGCTGATACATTTGATAAGATCGACGCTGCAATTTCTGTTATAGAACTCCTAATCACCTCAATATTGGTTAGTCAATTTCTTTTAAGAAAATGAGATTATCTCCACGGTTCTCATCTACTTTGAGATAATTTATTTTCATTATTTATCACTCCTCGAATTCTTCCCACAGGGAAATTTGGCCACTGGTCCCACGTCGTCCGATTTGGTTTCTAGGGGGGAAAGTTCTTCCACCCGAGCCGAGGGTACGGTATCAAATGTTGGGCAGACTCCTATGCCAAACCAGGGGGTTATGCTACAAGGAGAGGTTTATGCGCCAACTTCAGCACAAGGGCAGTTTCATTATCCTAACACATGGTTGCCAAGGGGCCCTTCTCACACTTTAACCCCTGCTCCTGGATTTATTTCCCCACAAGATCCTCCATCAATTACGAACAACCCGATCCATTTGTCTCGCCCACCTACTCCAATTCCTTTCAACCCAGCTTTCCGGCCCCCCCCTGTTCATCCTCCCAGACACCAGTTTCCTGCACAAGACATGCAGCAACCTTTCATGACTCAGCCCAGTCACGTTGGTCAACCTGGGGTTCATCCTTTGACAATTCAACGGCCTTCATTGGTTCAATCTAGCGTCTCAAATCCAAACTTCACTGGCAGTGGTCCATTACCTTCAGGTCTACTCCTAAATATGCCAGGGTCATCAATTCCCTCTTCCTTGCCTCAACATGTTCCCAATAGCATTCCTTCAGGATCACTGCCTGATCGCCCTTTGGCACCTCCTAGCACAGTTTCTACTGGTTTTTCTGGACACCATCCACCGCAGGGTCCAAATAACATGGGACAGACGGCTCTATCATTTCCCCCACCCTTAGGACCTCGTGCAGCTCCACTGCAGGGTGTTAATTCTTCTAGCGCAGTACCTGCAAATACAGCAGTAGCCAATGTGGATGCATATGCATCTTTTCCTTCTGGACCATCCACCCCCCAGGCTCCAATTCCGTCACCCCATATAGGGCATCGCCCACCATTTTCAGTTCCTTCAGCACTATTACCCCCAACAGCACATAACCCAGCTGGTAACTTCATTGCTGGATCTGCTTTAACCCGTCCAACACCACCTACAAATACAAGTAACTTTACATTTCAACCACTGGGTCCACCAAACCCGTCTGCTCAACCAATGCTCAATTTGAACATTCAAAACTCACCAACCGTACCTTCATTGCAGCAGCCTGCATCTGGGGCGCCATCTTTCCATCCGGCTGCCCCAAATTTTTCCAGAGTTGGGAATCAACCATTTCCCGGACCCCAAGCTGGTAGCCAGATTGGTAATCATCGAATCCAAGAGGTCTCAACTAGGCTTCCTGCTTTCCTTGACCCAGGTCCTCGGACACAACTGCATCAGAGAAACTTTAGACCAAGTATGCAAATGCAAATGCCGAATTTGCAGGGCAATTTTCCTCACAGACCAGGGAACCATATGCAACTTGAACAAGGTTTCCTCATGCAAGCTACTCGACCTGATGTCCGGTTTGCTCCTCCACACTACAGTGGCAATCTGACATTTGTTTCTGGCCAGCCGCCTCCAAGTTCCGGAGGGCAGCAAGTTTATGATCCGTTCTCTCCTACATCTGTGTCTGGCACACAACAACAGGGGAGCAATCTTCCTAGATGAGAACTGTCAAACCGCATCAGGTGTTTGTAGTACTTAGTTAGTCCAAGTGCTGCATGGACTTCCGGGATCACCCATTAAGGCCCCAAAATGGCCACTCTAAAGAATGTAGGTGAGTGTGATGAGCATCTACTAAGCTCATAGATCAAAGCTTGACTGTATTTATGTTCCGCTCAAAAATATGAAAAATTACTTAGAATGGATATGTGATTCAATACTTTGCTGGTGAACTGAGCAAGCTCAACTAGTGACCTCTATTTTCTGACATATAAGCTTCTGATTCCCCC

mRNA sequence

AAGCAATTTCCCGGAGCACTTTGTGTGCTCTCGTAAGTGCGTCAATTCTTCATTGTGGATTCAGTTTTGAAGAACGCAGCGGTTCAGGTGATTGGAGAACAATATGAGTGCAGAGGTTGAAAAGACGTCGCATATTGAACCGGGAAATGCAAAGATGTCTGGAGCAACTAATTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTTTGCAGCGAAGACTGGGTTTGTTATACCAAAAAACAAGCTTTCAGGATCTTTGGTTCCCGTCTTTCGAGTGAACAAGAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAAATGAGAAACAGTCTCAAAGAAAAACAAAGTGGGGTCCTGATCTAACACAGGATTCTGCAGTTAGAAGGGGGAGGCTCATAGCTTATCAGGCACAACTCAAAGTCAATAGAAAATGCGTTTATTTTGTTTATTTTGTGGAGCTTTTGAAGTGTCACACTTCCCTATCACTGTGTATCTTGGATAAATTCCTACTCATATCTCAAGGTATAATATGGGATAAAATCCTTCTCCCATCTTTGACCATTTTCATACAGTTGAATATTGTCAATTTGCTACCATTGAATTTCCCCTTTTTCTTATTTGGTGCTAAAATTCTTCTGTGTGACTGTTTCGCATGGAACATTCCCATCCAGGTGCTACTTAGTGACATAACTGCCTCTATGACTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACCCTGGAGGTTCCAGAGACACAAGATTCAGCAATAGAAGCTGAGAATGTTGATGATTCCCCGGGATCCCAAGCAACTAATGAGGTGCGAAACAACGAACTTTTGGAGATTGAGAAACGTGAAGTTATTGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGAAAGCAGACAAGTTACTTCTCCCAGTTAAAGAATATCCTGATTACAACTTTATTGGCTTAATATACGGCCCCAGTGGGGAAAATCAAAAGCGATTAGAAAAGGAAACTGGAGCCAAAATACAAATTTGTGGTATTAAACCTGGGACAGGTGAAAAGGTGATCCCTTTGACTCATGAAATTCATGATATGGTCTATACCAGTTATACACAGTCTGTCGTGTTATCTTGTTCTAATCTTTTATTCTTACTGCAAAATATATGAGCACCTCAGGGCTTTTTAGCTGTCAAGAATCTCTTCAGAAGTCTCTTTTACTTTTTATTTGTTCCAAAGCTCACTAGATCAACCTGTGGCTGTTTATTTTGTCTAGAAGTTAGAGTCTGTTCTGTGAGAATGGCTCTGAAGTTTGAAGGCACCTCAGGGTTCTTTTAATTTTGCCGAGGTTTAAAACTTGAGGGAGTTGTGAACTATAGTTTTTGTTAGATATTGTCTTCTTTGGGTTTTCCCTTCCGAGCTTCCCTTCAAAGTTTTAAAACACGTCCGCTAGGGAGAGGTTTCCACACCTTTATAAAGAATGCTTAGTTCCCCTCTTCAACCGATGTGGGATCCACAATCCATCTACTTTGGGGCCAGCGTCCTTGCTGGCACTCGTTTCCCTCTCCAATCAATATGAGATCTCACAGTTTTACTCTTTGTATCTCCCTGCCCCTCTTCTTGCAGGACGAAATTAAACCAACTGATGGACACGAAGCTCAGAGTGGTTATGAAGAGCTGTATGTTTGCATGTCAGCTGATACATTTGATAAGATCGACGCTGCAATTTCTGTTATAGAACTCCTAATCACCTCAATATTGGGAAATTTGGCCACTGGTCCCACGTCGTCCGATTTGGTTTCTAGGGGGGAAAGTTCTTCCACCCGAGCCGAGGGTACGGTATCAAATGTTGGGCAGACTCCTATGCCAAACCAGGGGGTTATGCTACAAGGAGAGGTTTATGCGCCAACTTCAGCACAAGGGCAGTTTCATTATCCTAACACATGGTTGCCAAGGGGCCCTTCTCACACTTTAACCCCTGCTCCTGGATTTATTTCCCCACAAGATCCTCCATCAATTACGAACAACCCGATCCATTTGTCTCGCCCACCTACTCCAATTCCTTTCAACCCAGCTTTCCGGCCCCCCCCTGTTCATCCTCCCAGACACCAGTTTCCTGCACAAGACATGCAGCAACCTTTCATGACTCAGCCCAGTCACGTTGGTCAACCTGGGGTTCATCCTTTGACAATTCAACGGCCTTCATTGGTTCAATCTAGCGTCTCAAATCCAAACTTCACTGGCAGTGGTCCATTACCTTCAGGTCTACTCCTAAATATGCCAGGGTCATCAATTCCCTCTTCCTTGCCTCAACATGTTCCCAATAGCATTCCTTCAGGATCACTGCCTGATCGCCCTTTGGCACCTCCTAGCACAGTTTCTACTGGTTTTTCTGGACACCATCCACCGCAGGGTCCAAATAACATGGGACAGACGGCTCTATCATTTCCCCCACCCTTAGGACCTCGTGCAGCTCCACTGCAGGGTGTTAATTCTTCTAGCGCAGTACCTGCAAATACAGCAGTAGCCAATGTGGATGCATATGCATCTTTTCCTTCTGGACCATCCACCCCCCAGGCTCCAATTCCGTCACCCCATATAGGGCATCGCCCACCATTTTCAGTTCCTTCAGCACTATTACCCCCAACAGCACATAACCCAGCTGGTAACTTCATTGCTGGATCTGCTTTAACCCGTCCAACACCACCTACAAATACAAGTAACTTTACATTTCAACCACTGGGTCCACCAAACCCGTCTGCTCAACCAATGCTCAATTTGAACATTCAAAACTCACCAACCGTACCTTCATTGCAGCAGCCTGCATCTGGGGCGCCATCTTTCCATCCGGCTGCCCCAAATTTTTCCAGAGTTGGGAATCAACCATTTCCCGGACCCCAAGCTGGTAGCCAGATTGGTAATCATCGAATCCAAGAGGTCTCAACTAGGCTTCCTGCTTTCCTTGACCCAGGTCCTCGGACACAACTGCATCAGAGAAACTTTAGACCAAGTATGCAAATGCAAATGCCGAATTTGCAGGGCAATTTTCCTCACAGACCAGGGAACCATATGCAACTTGAACAAGGTTTCCTCATGCAAGCTACTCGACCTGATGTCCGGTTTGCTCCTCCACACTACAGTGGCAATCTGACATTTGTTTCTGGCCAGCCGCCTCCAAGTTCCGGAGGGCAGCAAGTTTATGATCCGTTCTCTCCTACATCTGTGTCTGGCACACAACAACAGGGGAGCAATCTTCCTAGATGAGAACTGTCAAACCGCATCAGGTGTTTGTAGTACTTAGTTAGTCCAAGTGCTGCATGGACTTCCGGGATCACCCATTAAGGCCCCAAAATGGCCACTCTAAAGAATGTAGGTGAGTGTGATGAGCATCTACTAAGCTCATAGATCAAAGCTTGACTGTATTTATGTTCCGCTCAAAAATATGAAAAATTACTTAGAATGGATATGTGATTCAATACTTTGCTGGTGAACTGAGCAAGCTCAACTAGTGACCTCTATTTTCTGACATATAAGCTTCTGATTCCCCC

Coding sequence (CDS)

ATGAGTGCAGAGGTTGAAAAGACGTCGCATATTGAACCGGGAAATGCAAAGATGTCTGGAGCAACTAATTCATCTGCTGCACCAATGGGAAGCCAAAAGGTTTCCATGTTTGCAGCGAAGACTGGGTTTGTTATACCAAAAAACAAGCTTTCAGGATCTTTGGTTCCCGTCTTTCGAGTGAACAAGAAGTTGGGAGGGAATGAATCAGCTAATGGAGAAAATGAGAAACAGTCTCAAAGAAAAACAAAGTGGGGTCCTGATCTAACACAGGATTCTGCAGTTAGAAGGGGGAGGCTCATAGCTTATCAGGCACAACTCAAAGTCAATAGAAAATGCGTTTATTTTGTTTATTTTGTGGAGCTTTTGAAGTGTCACACTTCCCTATCACTGTGTATCTTGGATAAATTCCTACTCATATCTCAAGGTATAATATGGGATAAAATCCTTCTCCCATCTTTGACCATTTTCATACAGTTGAATATTGTCAATTTGCTACCATTGAATTTCCCCTTTTTCTTATTTGGTGCTAAAATTCTTCTGTGTGACTGTTTCGCATGGAACATTCCCATCCAGGTGCTACTTAGTGACATAACTGCCTCTATGACTCGATTGGAACAAATCATGGAACTCCTTAAGTCTGGAACCCTGGAGGTTCCAGAGACACAAGATTCAGCAATAGAAGCTGAGAATGTTGATGATTCCCCGGGATCCCAAGCAACTAATGAGGTGCGAAACAACGAACTTTTGGAGATTGAGAAACGTGAAGTTATTGGTGAAATACTAAAACTGAATCCAAGTTATAAGGCCCCTCCTGATTATAGGCCCTTGTTGAAAGCAGACAAGTTACTTCTCCCAGTTAAAGAATATCCTGATTACAACTTTATTGGCTTAATATACGGCCCCAGTGGGGAAAATCAAAAGCGATTAGAAAAGGAAACTGGAGCCAAAATACAAATTTGTGGTATTAAACCTGGGACAGGTGAAAAGGTGATCCCTTTGACTCATGAAATTCATGATATGGTCTATACCAGTTATACACAGTCTGTCGTGTTATCTTGTTCTAATCTTTTATTCTTACTGCAAAATATATGA

Protein sequence

MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRVNKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVELLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILLCDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQATNEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEKVIPLTHEIHDMVYTSYTQSVVLSCSNLLFLLQNI
Homology
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BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q9LU44 (Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-20
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]
BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q54BM5 (Branchpoint-bridging protein OS=Dictyostelium discoideum OX=44689 GN=sf1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-16
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 0 

Query: 203 RLEQIMELLKSGTLEVPE--TQDSAIEAENVDDSPGSQATNEVRNNELLEIEKREVIGEI 262
           R+++I + +  G +E  E   + S       D++     T E R  E L+ E+ +++   
Sbjct: 100 RVDEITKKITIGPIEFTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTA 159

Query: 263 LKLNPSYKAPPDYRP--LLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQ 322
            ++NP+YK P DY+P    K  K+ +P+K +P+YNFIGLI GP G  QKR+EKE+GAKI 
Sbjct: 160 QQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIA 219

Query: 323 ICGIKPGTGEKVIPLTHEIHDMVYTSYTQSVV 351
           I G       K   L  + +D ++   T   V
Sbjct: 220 IRGKGSSRDGKPTKLQFQENDELHVLLTADTV 251

[Close]
BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q4P0H7 (Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=BBP PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-16
Identity = 59/188 (31.38%), Postives = 93/188 (49.47%), Query Frame = 0 

Query: 177 KILLCDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPG 236
           KI +      N+  Q L  D  A   RL++I   L+SG    P+ + S       D+   
Sbjct: 145 KITIPTAIGANVSAQEL--DKYAIQVRLDEISRKLRSGDFVPPDRERSPSPPPTYDNQGR 204

Query: 237 SQATNEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLK----ADKLLLPVKEYPDY 296
              T EVR  + LE E+  ++   LKL+P+++ P DY  + +     +K+ LP+KE+P+ 
Sbjct: 205 RTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIKRNQRPTEKVYLPIKEFPEI 264

Query: 297 NFIGLIYGPSGENQKRLEKETGAKIQICG---IKPGTGEKVIPLTHEIHDMVYTSYTQSV 356
            F GL+ GP G   K +E+++GAKI I G   +K G G+       E    V T+  ++ 
Sbjct: 265 KFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTGKGKMDADEDEEEMHCVVTADDEAS 324

Query: 357 VLSCSNLL 358
           V  C  L+
Sbjct: 325 VKKCIKLI 330

[Close]
BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q15637 (Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-15
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0 

Query: 203 RLEQIMELLKSGTLEV-PETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIEKREVIGEI 262
           ++E +   L++G L + P  +D +   E + +S G +  T E R  + LE E+  +I E+
Sbjct: 57  QIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEM 116

Query: 263 LKLNPSYKAPPDYRP--LLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQ 322
           + LNP +K P DY+P     +DK+++P  EYP+ NF+GL+ GP G   K +EKE  AKI 
Sbjct: 117 VALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIM 176

[Close]
BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match: Q64213 (Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6)

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-15
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 0 

Query: 203 RLEQIMELLKSGTLEV-PETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIEKREVIGEI 262
           ++E +   L++G L + P  +D +   E + +S G +  T E R  + LE E+  +I E+
Sbjct: 57  QIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEM 116

Query: 263 LKLNPSYKAPPDYRP--LLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQ 322
           + LNP +K P DY+P     +DK+++P  EYP+ NF+GL+ GP G   K +EKE  AKI 
Sbjct: 117 VALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIM 176

[Close]
BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1H260 (branchpoint-bridging protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459759 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 1.3e-109
Identity = 231/329 (70.21%), Postives = 231/329 (70.21%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 231

[Close]
BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1K0A6 (splicing factor 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491294 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 7.8e-107
Identity = 227/329 (69.00%), Postives = 229/329 (69.60%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANG+NEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGDNEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDS GSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSLGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGI+ GTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIRAGTGEK 231

[Close]
BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1H2E4 (branchpoint-bridging protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459759 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 3.3e-105
Identity = 231/356 (64.89%), Postives = 231/356 (64.89%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240

Query: 241 NE---------------------------VRNNELLEIEKREVIGEILKLNPSYKAPPDY 300
           NE                           VRNNELLEIEKREVIGEILKLNPSYKAPPDY
Sbjct: 241 NEVNSELVLLSGTVFSLDDFDICLNHNIQVRNNELLEIEKREVIGEILKLNPSYKAPPDY 258

Query: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 258

[Close]
BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1K377 (branchpoint-bridging protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491294 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 2.0e-102
Identity = 227/356 (63.76%), Postives = 229/356 (64.33%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANG+NEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGDNEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDS GSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSLGSQAT 240

Query: 241 NE---------------------------VRNNELLEIEKREVIGEILKLNPSYKAPPDY 300
           NE                           VRNNELLEIEKREVIGEILKLNPSYKAPPDY
Sbjct: 241 NEVNSELVLLSGTVFSLYDFDVCLNHNIQVRNNELLEIEKREVIGEILKLNPSYKAPPDY 258

Query: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGI+ GTGEK
Sbjct: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIRAGTGEK 258

[Close]
BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match: A0A6J1DII6 (branchpoint-bridging protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021231 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 4.1e-92
Identity = 201/330 (60.91%), Postives = 216/330 (65.45%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGN KMSGAT SS APMGSQKVSMFAAKTGFVIPKNKLSGSLVP+FRV
Sbjct: 1   MSAEVEKTSHIEPGNMKMSGATISSPAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPIFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKK GGNES NGEN+KQ+QRKTKWGPDLTQD+AVR+GRLIAYQ                 
Sbjct: 61  NKKSGGNESVNGENDKQAQRKTKWGPDLTQDTAVRKGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDD-SPGSQA 240
                                TRLEQI ELLKSGTLEVPETQDSA+ AENV+D SPGSQA
Sbjct: 181 ---------------------TRLEQITELLKSGTLEVPETQDSALGAENVEDKSPGSQA 232

Query: 241 TNEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIY 300
           +++V+N ELLE+EKREVIGEILKLNPSYKAPPDYRPLLK D+  LPVKEYP YNFIGLIY
Sbjct: 241 SDKVQNTELLELEKREVIGEILKLNPSYKAPPDYRPLLKEDRFPLPVKEYPGYNFIGLIY 232

Query: 301 GPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           GPSGENQKRLEKETG K++ICGIK  TGEK
Sbjct: 301 GPSGENQKRLEKETGVKMRICGIKAETGEK 232

[Close]
BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_022958562.1 (branchpoint-bridging protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 406.4 bits (1043), Expect = 2.6e-109
Identity = 231/329 (70.21%), Postives = 231/329 (70.21%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 231

[Close]
BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_023534206.1 (branchpoint-bridging protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.3 bits (1035), Expect = 2.2e-108
Identity = 230/329 (69.91%), Postives = 230/329 (69.91%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGIK GTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIKAGTGEK 231

[Close]
BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_022995912.1 (splicing factor 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 397.1 bits (1019), Expect = 1.6e-106
Identity = 227/329 (69.00%), Postives = 229/329 (69.60%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANG+NEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGDNEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDS GSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSLGSQAT 231

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYG 231

Query: 301 PSGENQKRLEKETGAKIQICGIKPGTGEK 330
           PSGENQKRLEKETGAKIQICGI+ GTGEK
Sbjct: 301 PSGENQKRLEKETGAKIQICGIRAGTGEK 231

[Close]
BLAST of CmoCh02G012430 vs. NCBI nr
Match: XP_022958561.1 (branchpoint-bridging protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 391.7 bits (1005), Expect = 6.7e-105
Identity = 231/356 (64.89%), Postives = 231/356 (64.89%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240

Query: 241 NE---------------------------VRNNELLEIEKREVIGEILKLNPSYKAPPDY 300
           NE                           VRNNELLEIEKREVIGEILKLNPSYKAPPDY
Sbjct: 241 NEVNSELVLLSGTVFSLDDFDICLNHNIQVRNNELLEIEKREVIGEILKLNPSYKAPPDY 258

Query: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
           RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK
Sbjct: 301 RPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 258

[Close]
BLAST of CmoCh02G012430 vs. NCBI nr
Match: KAG7035824.1 (bpb1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.4 bits (999), Expect = 3.3e-104
Identity = 228/346 (65.90%), Postives = 229/346 (66.18%), Query Frame = 0 

Query: 1   MSAEVEKTSHIEPGNAKMSGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60
           MSAEVEKTSHIEPGNAKM+GATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV
Sbjct: 1   MSAEVEKTSHIEPGNAKMTGATNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVFRV 60

Query: 61  NKKLGGNESANGENEKQSQRKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVE 120
           NKKLGGNESANGEN KQSQRKTKWGPDLTQDSAVRRGRLIAYQ                 
Sbjct: 61  NKKLGGNESANGENRKQSQRKTKWGPDLTQDSAVRRGRLIAYQ----------------- 120

Query: 121 LLKCHTSLSLCILDKFLLISQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILL 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 CDCFAWNIPIQVLLSDITASMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240
                                TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT
Sbjct: 181 ---------------------TRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQAT 240

Query: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLP--------------- 300
           NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLP               
Sbjct: 241 NEVRNNELLEIEKREVIGEILKLNPSYKAPPDYRPLLKADKLLLPEIDLAGVGRVQLMVF 248

Query: 301 --VKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKPGTGEK 330
             VKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIK GTGEK
Sbjct: 301 SLVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICGIKAGTGEK 248

[Close]
BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT3G32940.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-37
Identity = 117/311 (37.62%), Postives = 144/311 (46.30%), Query Frame = 0 

Query: 22  TNSSAAPMGSQKVSMFAAKTGFVIPKNKLSGSLVPVF-RVNKKLGGNESANGENEK-QSQ 81
           T++SAA     K+SMF AK+GFVIPKNKLSGSL+P+F R NK LG  +S  G   K   +
Sbjct: 2   TSTSAA-----KISMFGAKSGFVIPKNKLSGSLIPIFQRGNKTLGSADSDTGPPSKLGKK 61

Query: 82  RKTKWGPDLTQDSAVRRGRLIAYQAQLKVNRKCVYFVYFVELLKCHTSLSLCILDKFLLI 141
           RKTKW PDL+QD AV++ R +AYQ                                    
Sbjct: 62  RKTKWAPDLSQDIAVKKCRFLAYQ------------------------------------ 121

Query: 142 SQGIIWDKILLPSLTIFIQLNIVNLLPLNFPFFLFGAKILLCDCFAWNIPIQVLLSDITA 201
                                                                       
Sbjct: 122 ------------------------------------------------------------ 181

Query: 202 SMTRLEQIMELLKSGTLEVPETQDSAIEAENVDDSPGSQATNEVRNNELLEIEKREVIGE 261
              R++QI + L+SGTLEV ET                       N   LE EKRE IGE
Sbjct: 182 --KRVDQITQRLESGTLEV-ET-----------------------NRTDLEFEKREAIGE 184

Query: 262 ILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQI 321
           IL+LNP YKAPPDY+PLLK  +L + VKE+ D++F+ LI+G  G+ QKRLEKETGAK+QI
Sbjct: 242 ILELNPRYKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFGSQGDTQKRLEKETGAKVQI 184

Query: 322 CGIKPGTGEKV 331
            G K G GEKV
Sbjct: 302 FGTKTG-GEKV 184

[Close]
BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT5G51300.1 (splicing factor-related )

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-22
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]
BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT5G51300.2 (splicing factor-related )

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-22
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]
BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT5G51300.3 (splicing factor-related )

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-22
Identity = 62/129 (48.06%), Postives = 82/129 (63.57%), Query Frame = 0 

Query: 196 DITASMTRLEQIMELLKSGTL--EVPETQDSAIEAENVDDSPGSQA-TNEVRNNELLEIE 255
           +I A  +RL +I  +L+SG    + PE Q S    E V D+ G +  T E R  E L  E
Sbjct: 157 EIQALNSRLLEISRMLQSGMPLDDRPEGQRSP-SPEPVYDNMGIRINTREYRARERLNRE 216

Query: 256 KREVIGEILKLNPSYKAPPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKE 315
           ++E+I +I+K NP++K P DYRP     KL +P+KE+P YNFIGLI GP G  QKR+E+E
Sbjct: 217 RQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERE 276

Query: 316 TGAKIQICG 322
           TGAKI I G
Sbjct: 277 TGAKIVIRG 284

[Close]
BLAST of CmoCh02G012430 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-06
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 269 APPDYRPLLKADKLLLPVKEYPDYNFIGLIYGPSGENQKRLEKETGAKIQICG 322
           A P   P+ +  +L LPV  YP++NF+G + GP G + KR+E  TG ++ I G
Sbjct: 126 ASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178

The following BLAST results are available for this feature:
BLAST of CmoCh02G012430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LU441.4e-2048.06Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1[more]
Q54BM52.1e-1634.87Branchpoint-bridging protein OS=Dictyostelium discoideum OX=44689 GN=sf1 PE=3 SV... [more]
Q4P0H77.9e-1631.38Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) OX=2376... [more]
Q156371.4e-1538.21Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4[more]
Q642131.8e-1538.21Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6[more]
BLAST of CmoCh02G012430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H2601.3e-10970.21branchpoint-bridging protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1K0A67.8e-10769.00splicing factor 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491294 PE... [more]
A0A6J1H2E43.3e-10564.89branchpoint-bridging protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1K3772.0e-10263.76branchpoint-bridging protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1DII64.1e-9260.91branchpoint-bridging protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of CmoCh02G012430 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958562.12.6e-10970.21branchpoint-bridging protein-like isoform X2 [Cucurbita moschata][more]
XP_023534206.12.2e-10869.91branchpoint-bridging protein-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022995912.11.6e-10669.00splicing factor 1-like isoform X2 [Cucurbita maxima][more]
XP_022958561.16.7e-10564.89branchpoint-bridging protein-like isoform X1 [Cucurbita moschata][more]
KAG7035824.13.3e-10465.90bpb1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh02G012430 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G32940.12.2e-3737.62RNA-binding KH domain-containing protein [more]
AT5G51300.19.9e-2248.06splicing factor-related [more]
AT5G51300.29.9e-2248.06splicing factor-related [more]
AT5G51300.39.9e-2248.06splicing factor-related [more]
AT3G08620.12.6e-0641.51RNA-binding KH domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10K Homology domain, type 1coord: 273..338
e-value: 5.4E-17
score: 64.1
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 280..326
IPR032570Splicing factor 1, helix-hairpin domainPFAMPF16275SF1-HHcoord: 198..274
e-value: 3.1E-9
score: 37.2
NoneNo IPR availableGENE3D6.10.140.1790coord: 195..270
e-value: 8.2E-7
score: 30.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availablePANTHERPTHR11208:SF98RNA-BINDING KH DOMAIN-CONTAINING PROTEINcoord: 26..330
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 293..319
score: 8.554656
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 293..324
e-value: 2.0E-5
score: 24.3
IPR045071KH domain-containing BBP-likePANTHERPTHR11208RNA-BINDING PROTEIN RELATEDcoord: 26..330

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G012430.1CmoCh02G012430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding