CmoCh02G011550 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G011550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionacyl-CoA-binding domain-containing protein 1-like
LocationCmo_Chr02: 6987103 .. 6987719 (-)
RNA-Seq ExpressionCmoCh02G011550
SyntenyCmoCh02G011550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCATGCTAATGATGTTTCGACGAGCAAGATCATGACACGTGTAATAGTACACAATTGCGTGGTGGGGAGGGACTTCCGTTACTGCGTACACCGCCGCTTTCAATAGACCGTGTGTTTCATCTTTCGCGCTCTCTCTCTCGCGTCAGGTTTTACCTTTCTTCAATCTTTCATCTCCAAGGATTCCTCCTCATCTCTGCTCATCCAATTCCCTTTCAGATTCATTTACTACTTCTTGTTTCAATCGCCTCGCCATGGCGGAATGGCAGAGCTTCTCCAAACCGCCATGGCGGAGTTGTCAAGTTGATCTCTGTAGTTGTCTCTTTTAAAGAAGACAACCTCTCTACCTCTCGTACTACCGCTATTTCCATTCAGGAATCCGCCGGAGGAGCTTCCGGCATCAAGGTAATCGAAAGCGACCTGGCTGTTTTCGGGTCGGGTTCGGTAGATTTCGGATTGGCGCACGAACATGGTAGTGTGAGGAATGGCGGTATTGGTGGGAGGGATTCCGATGATGATGATTGGGAAGGGGTGGAGAGCACCGAATTCGATGAGCTCTACAGCGCCGCAACTGCATTTGTGGCTGCATCTGCTTTCTCCCAAGGTCTCCAATGA

mRNA sequence

ATGTGCCATGCTAATGATGTTTCGACGAGCAAGATCATGACACGTATTCATTTACTACTTCTTGTTTCAATCGCCTCGCCATGGCGGAATGGCAGAGCTTCTCCAAACCGCCATGGCGGAGTTGTCAAGTTGATCTCTGTAGTTGTCTCTTTTAAAGAAGACAACCTCTCTACCTCTCGTACTACCGCTATTTCCATTCAGGAATCCGCCGGAGGAGCTTCCGGCATCAAGGTAATCGAAAGCGACCTGGCTGTTTTCGGGTCGGGTTCGGTAGATTTCGGATTGGCGCACGAACATGGTAGTGTGAGGAATGGCGGTATTGGTGGGAGGGATTCCGATGATGATGATTGGGAAGGGGTGGAGAGCACCGAATTCGATGAGCTCTACAGCGCCGCAACTGCATTTGTGGCTGCATCTGCTTTCTCCCAAGGTCTCCAATGA

Coding sequence (CDS)

ATGTGCCATGCTAATGATGTTTCGACGAGCAAGATCATGACACGTATTCATTTACTACTTCTTGTTTCAATCGCCTCGCCATGGCGGAATGGCAGAGCTTCTCCAAACCGCCATGGCGGAGTTGTCAAGTTGATCTCTGTAGTTGTCTCTTTTAAAGAAGACAACCTCTCTACCTCTCGTACTACCGCTATTTCCATTCAGGAATCCGCCGGAGGAGCTTCCGGCATCAAGGTAATCGAAAGCGACCTGGCTGTTTTCGGGTCGGGTTCGGTAGATTTCGGATTGGCGCACGAACATGGTAGTGTGAGGAATGGCGGTATTGGTGGGAGGGATTCCGATGATGATGATTGGGAAGGGGTGGAGAGCACCGAATTCGATGAGCTCTACAGCGCCGCAACTGCATTTGTGGCTGCATCTGCTTTCTCCCAAGGTCTCCAATGA

Protein sequence

MCHANDVSTSKIMTRIHLLLLVSIASPWRNGRASPNRHGGVVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAHEHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASAFSQGLQ
Homology
BLAST of CmoCh02G011550 vs. ExPASy Swiss-Prot
Match: Q9STP8 (Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAHEHG 100
           + KLIS+VV+FKEDNLS +R    S  E        + ++S    FG G  D  L  E G
Sbjct: 21  LAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVDSRRLDSSCGGFG-GEAD-SLVAEQG 80

Query: 101 SVRNGGIGGRDS-DDDDWEGVESTEFDELYSAATAFVAASA 141
           S R+  + G DS +DDDWEGVESTE DE +SAAT FV  +A
Sbjct: 81  SSRSDSVAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAA 119

BLAST of CmoCh02G011550 vs. ExPASy Swiss-Prot
Match: Q9SM23 (Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=ACBP1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAHEHG 100
           + KLIS++++FK++NLS +R        +      ++ +E+   +  SG  D  L  E G
Sbjct: 21  LAKLISILLAFKDENLSLTRN-----HTTQSEYENLRKVETLTGI--SGETD-SLIAEQG 80

Query: 101 SVRNGGIGGRD-SDDDDWEGVESTEFDELYSAATAFVAASA 141
           S+R    G  D SDDDDWEGVESTE DE +SAATAFVAA+A
Sbjct: 81  SLR----GDEDESDDDDWEGVESTELDEAFSAATAFVAAAA 109

BLAST of CmoCh02G011550 vs. ExPASy Swiss-Prot
Match: A3AYR1 (Acyl-CoA-binding domain-containing protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=ACBP4 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-08
Identity = 48/102 (47.06%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAHEHG 100
           V KLIS V++FKEDNL  +R+T  S   +   A+               S+D G    HG
Sbjct: 22  VAKLISTVIAFKEDNLRITRSTPTSPSAADTPAAPAP---------PPASLDGG----HG 81

Query: 101 SVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASAFS 143
              +G   G DS D DWEGVESTE DE +SAA+AFVAASA S
Sbjct: 82  DTSDG--SGSDS-DSDWEGVESTELDEEFSAASAFVAASAAS 107

BLAST of CmoCh02G011550 vs. ExPASy TrEMBL
Match: A0A0A0KN62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139300 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 72/107 (67.29%), Postives = 79/107 (73.83%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SR T+  I +S  G S  K IE+D+   GSGS DFG AH   
Sbjct: 21  VAKLISIVVSFKEDNLSLSRATSTPIPQSNEGVSKTKPIETDI---GSGSGDFGFAHEAD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN  IGG D+DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNDSIGGSDTDDDDWEGVESTELDELFSAATAFVAASA 124

BLAST of CmoCh02G011550 vs. ExPASy TrEMBL
Match: A0A6J1I6A7 (acyl-CoA-binding domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471513 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.6e-24
Identity = 74/113 (65.49%), Postives = 80/113 (70.80%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SR+T  SI +S+ GAS    IE D A  GSGS DFGLAH   
Sbjct: 21  VAKLISIVVSFKEDNLSISRSTTTSIPKSSEGASTTNPIEIDPADVGSGSGDFGLAHEGD 80

Query: 101 ----EHGSVRNGGIGGRDS------DDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN   GG D+      DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNESFGGSDTDDDDDDDDDDWEGVESTELDELFSAATAFVAASA 133

BLAST of CmoCh02G011550 vs. ExPASy TrEMBL
Match: A0A6J1E3J3 (acyl-CoA-binding domain-containing protein 1-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111430271 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.6e-24
Identity = 73/107 (68.22%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SRTT  S  +S+ GAS    IE D A  GSGS DFGLAH   
Sbjct: 21  VAKLISIVVSFKEDNLSISRTTTTSFPKSSEGASTTNPIEIDPADVGSGSGDFGLAHEDD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN   GG D+ DDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNESFGGSDT-DDDWEGVESTELDELFSAATAFVAASA 126

BLAST of CmoCh02G011550 vs. ExPASy TrEMBL
Match: A0A5D3C3R6 (Acyl-CoA-binding domain-containing protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00370 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SR T+  I +S    S  K IE+D+   GSGS DFG AH   
Sbjct: 21  VAKLISIVVSFKEDNLSISRATSTPIPQSNDEVSKTKPIETDV---GSGSGDFGFAHEVD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN  IGG D+DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVVAEHGSVRNDSIGGSDTDDDDWEGVESTELDELFSAATAFVAASA 124

BLAST of CmoCh02G011550 vs. ExPASy TrEMBL
Match: A0A1S3AUK9 (acyl-CoA-binding domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482974 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 71/107 (66.36%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SR T+  I +S    S  K IE+D+   GSGS DFG AH   
Sbjct: 21  VAKLISIVVSFKEDNLSISRATSTPIPQSNDEVSKTKPIETDV---GSGSGDFGFAHEVD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN  IGG D+DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVVAEHGSVRNDSIGGSDTDDDDWEGVESTELDELFSAATAFVAASA 124

BLAST of CmoCh02G011550 vs. NCBI nr
Match: KAG6605793.1 (Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-48
Identity = 108/112 (96.43%), Postives = 109/112 (97.32%), Query Frame = 0

Query: 32  RASPNRHGGVVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSV 91
           RASPNRHGGVVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAV GSG  
Sbjct: 51  RASPNRHGGVVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVSGSGWG 110

Query: 92  DFGLAHEHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASAFSQ 144
           DFGLAHEHGSVRNGGIGGRDSDDD+WEGVESTEFDELYSAATAFVAASAFSQ
Sbjct: 111 DFGLAHEHGSVRNGGIGGRDSDDDNWEGVESTEFDELYSAATAFVAASAFSQ 162

BLAST of CmoCh02G011550 vs. NCBI nr
Match: XP_011654606.1 (acyl-CoA-binding domain-containing protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-24
Identity = 72/107 (67.29%), Postives = 79/107 (73.83%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SR T+  I +S  G S  K IE+D+   GSGS DFG AH   
Sbjct: 21  VAKLISIVVSFKEDNLSLSRATSTPIPQSNEGVSKTKPIETDI---GSGSGDFGFAHEAD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN  IGG D+DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNDSIGGSDTDDDDWEGVESTELDELFSAATAFVAASA 124

BLAST of CmoCh02G011550 vs. NCBI nr
Match: XP_004145936.1 (acyl-CoA-binding domain-containing protein 1 isoform X1 [Cucumis sativus] >KGN49852.1 hypothetical protein Csa_000589 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-24
Identity = 72/107 (67.29%), Postives = 79/107 (73.83%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SR T+  I +S  G S  K IE+D+   GSGS DFG AH   
Sbjct: 21  VAKLISIVVSFKEDNLSLSRATSTPIPQSNEGVSKTKPIETDI---GSGSGDFGFAHEAD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN  IGG D+DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNDSIGGSDTDDDDWEGVESTELDELFSAATAFVAASA 124

BLAST of CmoCh02G011550 vs. NCBI nr
Match: XP_023551544.1 (acyl-CoA-binding domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 74/112 (66.07%), Postives = 79/112 (70.54%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SRTT  S  +S+ GAS    IE D A  GSGS DFGLAH   
Sbjct: 21  VAKLISIVVSFKEDNLSISRTTTTSFPKSSEGASTTNPIEIDPADVGSGSGDFGLAHEDD 80

Query: 101 ----EHGSVRNGGIGGRDS-----DDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN   GG D+     DDDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNESFGGSDTDDDDDDDDDWEGVESTELDELFSAATAFVAASA 132

BLAST of CmoCh02G011550 vs. NCBI nr
Match: XP_022922221.1 (acyl-CoA-binding domain-containing protein 1-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 73/107 (68.22%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAH--- 100
           V KLIS+VVSFKEDNLS SRTT  S  +S+ GAS    IE D A  GSGS DFGLAH   
Sbjct: 21  VAKLISIVVSFKEDNLSISRTTTTSFPKSSEGASTTNPIEIDPADVGSGSGDFGLAHEDD 80

Query: 101 ----EHGSVRNGGIGGRDSDDDDWEGVESTEFDELYSAATAFVAASA 141
               EHGSVRN   GG D+ DDDWEGVESTE DEL+SAATAFVAASA
Sbjct: 81  SVIAEHGSVRNESFGGSDT-DDDWEGVESTELDELFSAATAFVAASA 126

BLAST of CmoCh02G011550 vs. TAIR 10
Match: AT4G27780.1 (acyl-CoA binding protein 2 )

HSP 1 Score: 71.2 bits (173), Expect = 7.5e-13
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAHEHG 100
           + KLIS+VV+FKEDNLS +R    S  E        + ++S    FG G  D  L  E G
Sbjct: 21  LAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVDSRRLDSSCGGFG-GEAD-SLVAEQG 80

Query: 101 SVRNGGIGGRDS-DDDDWEGVESTEFDELYSAATAFVAASA 141
           S R+  + G DS +DDDWEGVESTE DE +SAAT FV  +A
Sbjct: 81  SSRSDSVAGDDSEEDDDWEGVESTELDEAFSAATLFVTTAA 119

BLAST of CmoCh02G011550 vs. TAIR 10
Match: AT5G53470.1 (acyl-CoA binding protein 1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 41  VVKLISVVVSFKEDNLSTSRTTAISIQESAGGASGIKVIESDLAVFGSGSVDFGLAHEHG 100
           + KLIS++++FK++NLS +R        +      ++ +E+   +  SG  D  L  E G
Sbjct: 21  LAKLISILLAFKDENLSLTRN-----HTTQSEYENLRKVETLTGI--SGETD-SLIAEQG 80

Query: 101 SVRNGGIGGRD-SDDDDWEGVESTEFDELYSAATAFVAASA 141
           S+R    G  D SDDDDWEGVESTE DE +SAATAFVAA+A
Sbjct: 81  SLR----GDEDESDDDDWEGVESTELDEAFSAATAFVAAAA 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9STP81.1e-1148.51Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9SM237.6e-1045.54Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=... [more]
A3AYR13.2e-0847.06Acyl-CoA-binding domain-containing protein 4 OS=Oryza sativa subsp. japonica OX=... [more]
Match NameE-valueIdentityDescription
A0A0A0KN621.9e-2467.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139300 PE=3 SV=1[more]
A0A6J1I6A79.6e-2465.49acyl-CoA-binding domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1E3J39.6e-2468.22acyl-CoA-binding domain-containing protein 1-like isoform X5 OS=Cucurbita moscha... [more]
A0A5D3C3R61.6e-2366.36Acyl-CoA-binding domain-containing protein 1 isoform X1 OS=Cucumis melo var. mak... [more]
A0A1S3AUK91.6e-2366.36acyl-CoA-binding domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 ... [more]
Match NameE-valueIdentityDescription
KAG6605793.12.3e-4896.43Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_011654606.14.0e-2467.29acyl-CoA-binding domain-containing protein 1 isoform X2 [Cucumis sativus][more]
XP_004145936.14.0e-2467.29acyl-CoA-binding domain-containing protein 1 isoform X1 [Cucumis sativus] >KGN49... [more]
XP_023551544.11.5e-2366.07acyl-CoA-binding domain-containing protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022922221.12.0e-2368.22acyl-CoA-binding domain-containing protein 1-like isoform X5 [Cucurbita moschata... [more]
Match NameE-valueIdentityDescription
AT4G27780.17.5e-1348.51acyl-CoA binding protein 2 [more]
AT5G53470.15.4e-1145.54acyl-CoA binding protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24119ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6coord: 42..140
NoneNo IPR availablePANTHERPTHR24119:SF4ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2coord: 42..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G011550.1CmoCh02G011550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005488 binding