CmoCh02G010660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G010660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Trehalose-phosphatase
Location	Cmo_Chr02: 6505819 .. 6506361 (-)
RNA-Seq Expression	CmoCh02G010660
Synteny	CmoCh02G010660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAAACGTATGCAATTCTACGGAAGAAACTCGAAGAACTTGAACGACAAGTACAACTCTCTCGCAACAACGTTCACCCTTCCCTCCTCCAAGATATCCACCAAAAGTGGCTTTTCATAGCCAATCTCCTCTCCGCCGAGGTCGCCTCATGCCCAAGCAAGCCTCGACATTTGAAGCACATTGCCCGCCGCCTTGCCCAACTCGAACCCGCCTTCCGCAATTGCAAAGCCGAGGACTTGGTCGATCATGTTGACGATGTGTCTACTTGTTCTTGCACTGAGTCGTGCTTGAACGACGATGGAGACGTAGCGAGTAGTTGTTTGGATGACGAGGAGGAGGGTGGGGAGTTTTATGAGTGTGTGGAGAATGAAAAAGAAGAGAAGGAAGAGAGAAAAATGGTGAGAGTTGGAACATTGTGGGGAGCAATGGCCAGTGGCTGTCTCATTGGTATGGCTTTAATGAGTATTGCTGTTTTTTCCATTGAGTGTTTTGGTCATCTTCAAGTTCAACAAAATGGAGGTTTTGTTACTCCAACTTAG

mRNA sequence

ATGACAAAAACGTATGCAATTCTACGGAAGAAACTCGAAGAACTTGAACGACAAGTACAACTCTCTCGCAACAACGTTCACCCTTCCCTCCTCCAAGATATCCACCAAAAGTGGCTTTTCATAGCCAATCTCCTCTCCGCCGAGGTCGCCTCATGCCCAAGCAAGCCTCGACATTTGAAGCACATTGCCCGCCGCCTTGCCCAACTCGAACCCGCCTTCCGCAATTGCAAAGCCGAGGACTTGGTCGATCATGTTGACGATGTGTCTACTTGTTCTTGCACTGAGTCGTGCTTGAACGACGATGGAGACGTAGCGAGTAGTTGTTTGGATGACGAGGAGGAGGGTGGGGAGTTTTATGAGTGTGTGGAGAATGAAAAAGAAGAGAAGGAAGAGAGAAAAATGGTGAGAGTTGGAACATTGTGGGGAGCAATGGCCAGTGGCTGTCTCATTGGTATGGCTTTAATGAGTATTGCTGTTTTTTCCATTGAGTGTTTTGGTCATCTTCAAGTTCAACAAAATGGAGGTTTTGTTACTCCAACTTAG

Coding sequence (CDS)

ATGACAAAAACGTATGCAATTCTACGGAAGAAACTCGAAGAACTTGAACGACAAGTACAACTCTCTCGCAACAACGTTCACCCTTCCCTCCTCCAAGATATCCACCAAAAGTGGCTTTTCATAGCCAATCTCCTCTCCGCCGAGGTCGCCTCATGCCCAAGCAAGCCTCGACATTTGAAGCACATTGCCCGCCGCCTTGCCCAACTCGAACCCGCCTTCCGCAATTGCAAAGCCGAGGACTTGGTCGATCATGTTGACGATGTGTCTACTTGTTCTTGCACTGAGTCGTGCTTGAACGACGATGGAGACGTAGCGAGTAGTTGTTTGGATGACGAGGAGGAGGGTGGGGAGTTTTATGAGTGTGTGGAGAATGAAAAAGAAGAGAAGGAAGAGAGAAAAATGGTGAGAGTTGGAACATTGTGGGGAGCAATGGCCAGTGGCTGTCTCATTGGTATGGCTTTAATGAGTATTGCTGTTTTTTCCATTGAGTGTTTTGGTCATCTTCAAGTTCAACAAAATGGAGGTTTTGTTACTCCAACTTAG

Protein sequence

MTKTYAILRKKLEELERQVQLSRNNVHPSLLQDIHQKWLFIANLLSAEVASCPSKPRHLKHIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDVASSCLDDEEEGGEFYECVENEKEEKEERKMVRVGTLWGAMASGCLIGMALMSIAVFSIECFGHLQVQQNGGFVTPT

Homology

[Close]

BLAST of CmoCh02G010660 vs. ExPASy TrEMBL
Match: A0A5A7T4C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G003110 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.5e-55
Identity = 128/189 (67.72%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQLSRNN----VHPSLLQDIHQKWLFIANLLSAEVASCPSK- 60
           MTKTYAIL+KKL+ELE  +QLS NN    +HPSL Q+ HQK+LF+ANLLSAE+ASCP++ 
Sbjct: 1   MTKTYAILQKKLQELE--LQLSHNNLTTIIHPSLSQEFHQKFLFVANLLSAEIASCPTEL 60

Query: 61  -PRHLKHIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDV--ASSCLDDE 120
            PR L+H+ARRLAQLE  F +        HV+D STC CTESCLNDD +V   SSCL+DE
Sbjct: 61  MPRRLRHMARRLAQLEAGFWSPDMLADNGHVNDSSTCWCTESCLNDDSEVVSGSSCLEDE 120

Query: 121 EEGGE-FYECVENEKEEKEERKMVRVGTLWGAMASGCLIGMALMSIAVFSIECFGHLQVQ 180
            EGGE FYECVE EKEEKEERK+V VG L GAMASG +IGM LM +AVFSIE FG+ QVQ
Sbjct: 121 MEGGECFYECVEGEKEEKEERKIVGVGKLNGAMASGFVIGMVLMGVAVFSIEFFGYFQVQ 180

[Close]

BLAST of CmoCh02G010660 vs. ExPASy TrEMBL
Match: A0A0A0KUA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517140 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.3e-51
Identity = 126/191 (65.97%), Postives = 145/191 (75.92%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQLSRNN----VHPSLLQDIHQKWLFIANLLSAEVASCPS-- 60
           MTKTYAIL+KKL+ELE  +QLS NN    +HPSL Q+ HQK LF+ANLL+AE+ASCPS  
Sbjct: 1   MTKTYAILQKKLQELE--LQLSHNNLTTIIHPSLSQEFHQKLLFVANLLTAEIASCPSTL 60

Query: 61  KPRHLKHIARRLAQLEPAFRNCKAEDLVDH--VDDVSTCSCTESCLNDDGDV--ASSCLD 120
           KPR LKH+ARRLAQLE  F    + DLVD+  VDD +TC CTESCLNDD +V   SSCL+
Sbjct: 61  KPRRLKHMARRLAQLEAVF---WSPDLVDNGQVDDSTTCLCTESCLNDDSEVVSGSSCLE 120

Query: 121 DEEEGGE-FYECVENEKEEKEERKMVRVGTLWGAMASGCLIGMALMSIAVFSIECFGHLQ 180
           DE EGGE FYECVE EKEEKEERK+V V  L GAM SG +IG+  M +A F IE FG+ Q
Sbjct: 121 DEMEGGECFYECVEGEKEEKEERKIVGVVKLNGAMVSGFVIGVVSMGVANFFIELFGYFQ 180

[Close]

BLAST of CmoCh02G010660 vs. ExPASy TrEMBL
Match: A0A1Q3D5V2 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31320 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 84/203 (41.38%), Postives = 121/203 (59.61%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQ----VQLSRNNVHPSLLQDIHQKWLFIANLLSAEVASCPSKP 60
           MTK Y ILR+KL+ELE +    V L +        QDI Q ++F+ NLLSAE+A  PSKP
Sbjct: 1   MTKNYTILRRKLQELETKLDEAVSLPQQEHTQFDAQDIEQSFVFLKNLLSAEIALHPSKP 60

Query: 61  RHLKHIARRLAQLEPAFRNCKAEDLV---DHVDDVSTCSCTESCLNDDGDVAS------- 120
           RHL H+  RL +LE +F        +   DH++ VSTCSCTESCLNDDG+ ++       
Sbjct: 61  RHLNHMDNRLTELETSFHKWVTSKTLTDDDHIETVSTCSCTESCLNDDGEASAVSGSLGF 120

Query: 121 ----SCLDD---EEEGGEFYECVENEKE-EKEERKMVRVGTLWGAMASGCLIGMALMSIA 180
                 L+D   EE+      C+E +++ ++EE+K++ VGT  G MASG ++G+ALM + 
Sbjct: 121 EETEMYLEDLHVEEKLPMEMVCLEAKRDVKREEKKVMLVGTYCGVMASGVVVGVALMGLV 180

[Close]

BLAST of CmoCh02G010660 vs. ExPASy TrEMBL
Match: A0A5N6RU29 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020725 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-21
Identity = 87/213 (40.85%), Postives = 117/213 (54.93%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQ--LSRNNVHPS---LLQDIHQKWLFIANLLSAEVASCPSK 60
           MTK Y+ILRKKL+E+E  +    S     P    LL++I Q+++F+ +LLSAEVAS PSK
Sbjct: 1   MTKRYSILRKKLQEVESVLSHVFSLPVTTPCSDLLLEEIRQRFVFVKSLLSAEVASHPSK 60

Query: 61  PRHLKHIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDVASSCLDD--EE 120
           P HL+H+A+RL +LE  FR  ++   VDH D+ S CSCTESCLNDDG+ +        EE
Sbjct: 61  PHHLQHLAQRLEELERDFRAWESFRAVDH-DNASGCSCTESCLNDDGEASGDLGSPVYEE 120

Query: 121 EGGEFYECVENEK-------------------------EEKEERKMVRVGTLWGAMASGC 180
           E   F E +  EK                         + + E + V  G+L GAMA G 
Sbjct: 121 EPDRFPEGLIGEKALVGLNRENGMPAARCFRCSFVETRDMRGEERRVGNGSLCGAMAMGV 180

[Close]

BLAST of CmoCh02G010660 vs. ExPASy TrEMBL
Match: A0A5N6R0N0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008178 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 86/205 (41.95%), Postives = 117/205 (57.07%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQLSRNNVHPS-------LLQDIHQKWLFIANLLSAEVASCP 60
           MTK Y+IL++KL+ LE   +LS+    P+       LL+DI Q+++F+ NLLSAEVAS P
Sbjct: 1   MTKRYSILQRKLQGLES--ELSQRFSLPATTACSQLLLEDIEQRFVFLNNLLSAEVASHP 60

Query: 61  SKPRHLKHIARRLAQLEPAFRNCKA--EDLVDHVDD--VSTCSCTESCLNDDGDVA---- 120
           SKP HL HI +RLAQLE  FR  ++    L++H DD   S CSCTESCLNDDG+ +    
Sbjct: 61  SKPHHLHHIEQRLAQLEHDFRTWRSFKTSLLNHEDDGNGSRCSCTESCLNDDGEASAEED 120

Query: 121 ------------------SSCLDDEE---EGGEFYECVENEKEEK---EERKMVRVGTLW 166
                             S  L+ E+   + G F   VE + E++   E+R+ V VG+  
Sbjct: 121 TERFSHGLVVGDRALVEFSRGLNKEKALLQAGCFDSLVEEKAEQERKGEQRRPVGVGSWC 180

[Close]

BLAST of CmoCh02G010660 vs. NCBI nr
Match: KAG6605709.1 (Cysteine and histidine-rich domain-containing protein RAR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 151/161 (93.79%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQLSRNNVHPSLLQDIHQKWLFIANLLSAEVASCPSKPRHLK 60
           MTKTYAILRKKLEELERQVQLSRNNVHPSLLQDIHQKWLFIANLLSAEVASCPSKPRHLK
Sbjct: 1   MTKTYAILRKKLEELERQVQLSRNNVHPSLLQDIHQKWLFIANLLSAEVASCPSKPRHLK 60

Query: 61  HIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDVASSCLDDEEEGGEFYE 120
           HIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDVASSCLDDE+EGGEFYE
Sbjct: 61  HIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDVASSCLDDEKEGGEFYE 120

Query: 121 CVENEKEEKEERKMVRVGTLWGAMASGCLIGMALMSIAVFS 162
           CVENEKEEKEERKMVRVGTLWGAMASGCLI +    I + S
Sbjct: 121 CVENEKEEKEERKMVRVGTLWGAMASGCLIVVKFSCIRIVS 161

[Close]

BLAST of CmoCh02G010660 vs. NCBI nr
Match: KAA0037648.1 (hypothetical protein E6C27_scaffold277G003110 [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 9.2e-55
Identity = 128/189 (67.72%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQLSRNN----VHPSLLQDIHQKWLFIANLLSAEVASCPSK- 60
           MTKTYAIL+KKL+ELE  +QLS NN    +HPSL Q+ HQK+LF+ANLLSAE+ASCP++ 
Sbjct: 1   MTKTYAILQKKLQELE--LQLSHNNLTTIIHPSLSQEFHQKFLFVANLLSAEIASCPTEL 60

Query: 61  -PRHLKHIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDV--ASSCLDDE 120
            PR L+H+ARRLAQLE  F +        HV+D STC CTESCLNDD +V   SSCL+DE
Sbjct: 61  MPRRLRHMARRLAQLEAGFWSPDMLADNGHVNDSSTCWCTESCLNDDSEVVSGSSCLEDE 120

Query: 121 EEGGE-FYECVENEKEEKEERKMVRVGTLWGAMASGCLIGMALMSIAVFSIECFGHLQVQ 180
            EGGE FYECVE EKEEKEERK+V VG L GAMASG +IGM LM +AVFSIE FG+ QVQ
Sbjct: 121 MEGGECFYECVEGEKEEKEERKIVGVGKLNGAMASGFVIGMVLMGVAVFSIEFFGYFQVQ 180

[Close]

BLAST of CmoCh02G010660 vs. NCBI nr
Match: KGN51765.2 (hypothetical protein Csa_009074, partial [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 1.6e-46
Identity = 118/182 (64.84%), Postives = 136/182 (74.73%), Query Frame = 0


Query: 10  KKLEELERQVQLSRNN----VHPSLLQDIHQKWLFIANLLSAEVASCPS--KPRHLKHIA 69
           KKL+ELE  +QLS NN    +HPSL Q+ HQK LF+ANLL+AE+ASCPS  KPR LKH+A
Sbjct: 1   KKLQELE--LQLSHNNLTTIIHPSLSQEFHQKLLFVANLLTAEIASCPSTLKPRRLKHMA 60

Query: 70  RRLAQLEPAFRNCKAEDLVDH--VDDVSTCSCTESCLNDDGDV--ASSCLDDEEEGGE-F 129
           RRLAQLE  F    + DLVD+  VDD +TC CTESCLNDD +V   SSCL+DE EGGE F
Sbjct: 61  RRLAQLEAVF---WSPDLVDNGQVDDSTTCLCTESCLNDDSEVVSGSSCLEDEMEGGECF 120

Query: 130 YECVENEKEEKEERKMVRVGTLWGAMASGCLIGMALMSIAVFSIECFGHLQVQQNGGFVT 181
           YECVE EKEEKEERK+V V  L GAM SG +IG+  M +A F IE FG+ Q QQNGGFV 
Sbjct: 121 YECVEGEKEEKEERKIVGVVKLNGAMVSGFVIGVVSMGVANFFIELFGYFQHQQNGGFVI 177

[Close]

BLAST of CmoCh02G010660 vs. NCBI nr
Match: GAV87896.1 (hypothetical protein CFOL_v3_31320 [Cephalotus follicularis])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-25
Identity = 84/203 (41.38%), Postives = 121/203 (59.61%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQ----VQLSRNNVHPSLLQDIHQKWLFIANLLSAEVASCPSKP 60
           MTK Y ILR+KL+ELE +    V L +        QDI Q ++F+ NLLSAE+A  PSKP
Sbjct: 1   MTKNYTILRRKLQELETKLDEAVSLPQQEHTQFDAQDIEQSFVFLKNLLSAEIALHPSKP 60

Query: 61  RHLKHIARRLAQLEPAFRNCKAEDLV---DHVDDVSTCSCTESCLNDDGDVAS------- 120
           RHL H+  RL +LE +F        +   DH++ VSTCSCTESCLNDDG+ ++       
Sbjct: 61  RHLNHMDNRLTELETSFHKWVTSKTLTDDDHIETVSTCSCTESCLNDDGEASAVSGSLGF 120

Query: 121 ----SCLDD---EEEGGEFYECVENEKE-EKEERKMVRVGTLWGAMASGCLIGMALMSIA 180
                 L+D   EE+      C+E +++ ++EE+K++ VGT  G MASG ++G+ALM + 
Sbjct: 121 EETEMYLEDLHVEEKLPMEMVCLEAKRDVKREEKKVMLVGTYCGVMASGVVVGVALMGLV 180

[Close]

BLAST of CmoCh02G010660 vs. NCBI nr
Match: KAE8125966.1 (hypothetical protein FH972_020725 [Carpinus fangiana])

HSP 1 Score: 111.7 bits (278), Expect = 6.7e-21
Identity = 87/213 (40.85%), Postives = 117/213 (54.93%), Query Frame = 0


Query: 1   MTKTYAILRKKLEELERQVQ--LSRNNVHPS---LLQDIHQKWLFIANLLSAEVASCPSK 60
           MTK Y+ILRKKL+E+E  +    S     P    LL++I Q+++F+ +LLSAEVAS PSK
Sbjct: 1   MTKRYSILRKKLQEVESVLSHVFSLPVTTPCSDLLLEEIRQRFVFVKSLLSAEVASHPSK 60

Query: 61  PRHLKHIARRLAQLEPAFRNCKAEDLVDHVDDVSTCSCTESCLNDDGDVASSCLDD--EE 120
           P HL+H+A+RL +LE  FR  ++   VDH D+ S CSCTESCLNDDG+ +        EE
Sbjct: 61  PHHLQHLAQRLEELERDFRAWESFRAVDH-DNASGCSCTESCLNDDGEASGDLGSPVYEE 120

Query: 121 EGGEFYECVENEK-------------------------EEKEERKMVRVGTLWGAMASGC 180
           E   F E +  EK                         + + E + V  G+L GAMA G 
Sbjct: 121 EPDRFPEGLIGEKALVGLNRENGMPAARCFRCSFVETRDMRGEERRVGNGSLCGAMAMGV 180

The following BLAST results are available for this feature:

BLAST of CmoCh02G010660 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G010660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T4C4	4.5e-55	67.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KUA1	2.3e-51	65.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517140 PE=4 SV=1	[more]
A0A1Q3D5V2	1.3e-25	41.38	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_31320 PE=4...	[more]
A0A5N6RU29	3.2e-21	40.85	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020725 PE=4 SV=1	[more]
A0A5N6R0N0	1.2e-20	41.95	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_008178 PE=4 SV=1	[more]

BLAST of CmoCh02G010660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605709.1	1.7e-77	93.79	Cysteine and histidine-rich domain-containing protein RAR1, partial [Cucurbita a...	[more]
KAA0037648.1	9.2e-55	67.72	hypothetical protein E6C27_scaffold277G003110 [Cucumis melo var. makuwa]	[more]
KGN51765.2	1.6e-46	64.84	hypothetical protein Csa_009074, partial [Cucumis sativus]	[more]
GAV87896.1	2.6e-25	41.38	hypothetical protein CFOL_v3_31320 [Cephalotus follicularis]	[more]
KAE8125966.1	6.7e-21	40.85	hypothetical protein FH972_020725 [Carpinus fangiana]	[more]

BLAST of CmoCh02G010660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G010660.1	CmoCh02G010660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0009853	photorespiration
cellular_component	GO:0016020	membrane
molecular_function	GO:0008453	alanine-glyoxylate transaminase activity
molecular_function	GO:0047958	glycine:2-oxoglutarate aminotransferase activity
molecular_function	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity