CmoCh02G009570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G009570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 5871209 .. 5871739 (-)
RNA-Seq Expression	CmoCh02G009570
Synteny	CmoCh02G009570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACATGAAAACACGCGAGCCGCTGAATATAAAAAAGAGACCTCCCCTCTTTCCCACAATTTCTGCGCCGCTTGTGTAGAATTTCATTGTCGATCCTTTCCTCCATTCCCTCAAGTCGGCCGAGATCCGGCTACTCGTCGGATTTCGCCCTCGTACGTCCTGTCCACCACCTGCTCCGACGAACCATGAAAGGCACCTGCACGTTGCTCGCCTCTGTCCTCGCAGCCTCGACCATGGCTTTCTCCTCGTCTTCGTCGTCCTCTAGTGGAGATCGCGACCTCGCTCTTTATCCTCCCTCTCTAGAGGTATAACCTTCATCGCCTTCGATTTTGAATGTTCTGTTTACAACTTCGAGGAATTTTCATGGCCTAATCTGGTTTTGATTTGGCGGATTGTGTTTTTTAGGGCTCCGTTTCGGATTCTCGTGCGAACAGAGGTTGCGGCTCGGATTCATCATCGGAGAAGGAGAAGTTTGCGCCGAGGTTCGATGGATTGAAATTCATTGAGACTTTGGTAACTGCTCATAGATAA

mRNA sequence

ACACATGAAAACACGCGAGCCGCTGAATATAAAAAAGAGACCTCCCCTCTTTCCCACAATTTCTGCGCCGCTTGTGTAGAATTTCATTGTCGATCCTTTCCTCCATTCCCTCAAGTCGGCCGAGATCCGGCTACTCGTCGGATTTCGCCCTCGTACGTCCTGTCCACCACCTGCTCCGACGAACCATGAAAGGCACCTGCACGTTGCTCGCCTCTGTCCTCGCAGCCTCGACCATGGCTTTCTCCTCGTCTTCGTCGTCCTCTAGTGGAGATCGCGACCTCGCTCTTTATCCTCCCTCTCTAGAGGGCTCCGTTTCGGATTCTCGTGCGAACAGAGGTTGCGGCTCGGATTCATCATCGGAGAAGGAGAAGTTTGCGCCGAGGTTCGATGGATTGAAATTCATTGAGACTTTGGTAACTGCTCATAGATAA

Coding sequence (CDS)

ATGAAAGGCACCTGCACGTTGCTCGCCTCTGTCCTCGCAGCCTCGACCATGGCTTTCTCCTCGTCTTCGTCGTCCTCTAGTGGAGATCGCGACCTCGCTCTTTATCCTCCCTCTCTAGAGGGCTCCGTTTCGGATTCTCGTGCGAACAGAGGTTGCGGCTCGGATTCATCATCGGAGAAGGAGAAGTTTGCGCCGAGGTTCGATGGATTGAAATTCATTGAGACTTTGGTAACTGCTCATAGATAA

Protein sequence

MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEKEKFAPRFDGLKFIETLVTAHR

Homology

[Close]

BLAST of CmoCh02G009570 vs. ExPASy TrEMBL
Match: A0A6J1HZR1 (uncharacterized protein LOC111469110 OS=Cucurbita maxima OX=3661 GN=LOC111469110 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAFSSSSSSS+ DRDLAL PPS EG VS+S +NRGCGSDSS+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CmoCh02G009570 vs. ExPASy TrEMBL
Match: A0A6J1ET49 (uncharacterized protein LOC111435756 OS=Cucurbita moschata OX=3662 GN=LOC111435756 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.2e-27
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAFSSSSSSS+ DRDLAL PPS EG VS+S +NRGCGSDSS+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CmoCh02G009570 vs. ExPASy TrEMBL
Match: A0A1S3AU25 (uncharacterized protein LOC103482871 OS=Cucumis melo OX=3656 GN=LOC103482871 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.7e-26
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAF SSSSSS+GDRDL LYPPS +G V +S ANRGCG+DSSSEK
Sbjct: 1  MKGSCTLLASVLAASTMAF-SSSSSSTGDRDLPLYPPSHQGFVPESGANRGCGADSSSEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CmoCh02G009570 vs. ExPASy TrEMBL
Match: A0A0A0KQK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146940 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.3e-25
Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSS---GDRDLALYPPSLEGSVSDSRANRGCGSDSS 60
          MKG+CTLLASVLAASTMAFSSSSSSSS   GDRDL LY  S +G VS+S ANRGCG+DSS
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSSSFTGDRDLPLYSLSHQGFVSESGANRGCGADSS 60

Query: 61 SEKEKFAPRFDGLKFIETLVTAHR 82
          SEKEKFAPRFDGL+FIETLVTAHR
Sbjct: 61 SEKEKFAPRFDGLRFIETLVTAHR 84

[Close]

BLAST of CmoCh02G009570 vs. ExPASy TrEMBL
Match: A0A5A7TMP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001410 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 70/91 (76.92%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLE----------GSVSDSRANR 60
          MKG+CTLLASVLAASTMAF SSSSSS+GDRDL LYPPS +          G VS+S ANR
Sbjct: 1  MKGSCTLLASVLAASTMAF-SSSSSSTGDRDLPLYPPSHQALSPSPSLSIGFVSESGANR 60

Query: 61 GCGSDSSSEKEKFAPRFDGLKFIETLVTAHR 82
          GCG+DSSSEKEKFAPRFDGL+FIETLVTAHR
Sbjct: 61 GCGADSSSEKEKFAPRFDGLRFIETLVTAHR 90

[Close]

BLAST of CmoCh02G009570 vs. NCBI nr
Match: KAG7035524.1 (hypothetical protein SDJN02_02320 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDS ANRGCGSDSSSEK
Sbjct: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSLANRGCGSDSSSEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGLKFIETLVTAHR
Sbjct: 61 EKFAPRFDGLKFIETLVTAHR 81

[Close]

BLAST of CmoCh02G009570 vs. NCBI nr
Match: KAG6605612.1 (Granule-bound starch synthase 1, chloroplastic/amyloplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 4.6e-30
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK
Sbjct: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60

Query: 61 EKFAPRFDGLKFIETL 77
          EKFAPRFDGLKFIETL
Sbjct: 61 EKFAPRFDGLKFIETL 76

[Close]

BLAST of CmoCh02G009570 vs. NCBI nr
Match: XP_022929045.1 (uncharacterized protein LOC111435756 [Cucurbita moschata] >XP_022970121.1 uncharacterized protein LOC111469110 [Cucurbita maxima] >KAG7017053.1 hypothetical protein SDJN02_22165 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAFSSSSSSS+ DRDLAL PPS EG VS+S +NRGCGSDSS+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CmoCh02G009570 vs. NCBI nr
Match: XP_023520500.1 (uncharacterized protein LOC111783920 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAFSSSSSSS+ DRDLAL PPS EG VS+S +NRGCGSD+S+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CmoCh02G009570 vs. NCBI nr
Match: XP_008437456.1 (PREDICTED: uncharacterized protein LOC103482871 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAF SSSSSS+GDRDL LYPPS +G V +S ANRGCG+DSSSEK
Sbjct: 1  MKGSCTLLASVLAASTMAF-SSSSSSTGDRDLPLYPPSHQGFVPESGANRGCGADSSSEK 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CmoCh02G009570 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 11 VLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRA----NRGCGSDSSSEKEKFAPR 70
          ++AAS    +S+++ S+G  + ++   S E ++S   A     +  GS      EKFAPR
Sbjct: 6  IIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDEKFAPR 65

Query: 71 FDGLKFIETLVTAHR 82
          FDGL+FIETLVTAHR
Sbjct: 66 FDGLRFIETLVTAHR 80

[Close]

BLAST of CmoCh02G009570 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSRANRGCGSDSSSEK 60
          MK +  ++ASV+A ST A SSSS          + PP +   V +SR   G         
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSS----------ILPP-VSPKVWESRKTNG--------S 60

Query: 61 EKFAPRFDGLKFIETLVTAHR 82
          + F PRFDGL+FIETLVTAHR
Sbjct: 61 DNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of CmoCh02G009570 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G009570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZR1	5.2e-27	86.42	uncharacterized protein LOC111469110 OS=Cucurbita maxima OX=3661 GN=LOC111469110...	[more]
A0A6J1ET49	5.2e-27	86.42	uncharacterized protein LOC111435756 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A1S3AU25	5.7e-26	85.19	uncharacterized protein LOC103482871 OS=Cucumis melo OX=3656 GN=LOC103482871 PE=...	[more]
A0A0A0KQK5	6.3e-25	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146940 PE=4 SV=1	[more]
A0A5A7TMP9	4.1e-24	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh02G009570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035524.1	2.2e-32	98.77	hypothetical protein SDJN02_02320 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605612.1	4.6e-30	100.00	Granule-bound starch synthase 1, chloroplastic/amyloplastic, partial [Cucurbita ...	[more]
XP_022929045.1	1.1e-26	86.42	uncharacterized protein LOC111435756 [Cucurbita moschata] >XP_022970121.1 unchar...	[more]
XP_023520500.1	2.4e-26	85.19	uncharacterized protein LOC111783920 [Cucurbita pepo subsp. pepo]	[more]
XP_008437456.1	1.2e-25	85.19	PREDICTED: uncharacterized protein LOC103482871 [Cucumis melo]	[more]

BLAST of CmoCh02G009570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	1.3e-06	42.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	2.9e-06	44.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..61
None	No IPR available	PANTHER	PTHR34683:SF3	BNAUNNG00100D PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G009570.1	CmoCh02G009570.1	mRNA