CmoCh02G008860 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G008860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA polymerase epsilon subunit C-like
Location	Cmo_Chr02: 5478100 .. 5480265 (-)
RNA-Seq Expression	CmoCh02G008860
Synteny	CmoCh02G008860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGACCGAAAGATCAAGTACCGAAATCAAGAGCAAAGAAGCGGGAACGTCGAAGCCACCTACCAAAACCAAAACCCTCAACGCCAGAAAATCAGATAAGAACGAATCGAAGAAGAAGAAGAAGAAGATTTACAGCAATAAGCATTCGAATAATGGCTCTGTGAAGGACGACGACGCTGTATTTATTTCTGCTCCAGGTTCCGCGTCGGAAGAGGAGGATGCCGGCGAGGACAGAGCCGAAACCACAAGTAAAAAAGCCAAGACCTCGAAATCGAAGGTAGGAAAATGGAACCATGTGAAGAAAGAAGAGAATGGATATGCAGAAGATGAAGAGGAAGAGGTCCAGGAGAAGATTTATACATTCCCTATGCAGCGGATCAAGAAAATCACGAGGGATGAAAATTCTGACTTTCGTATAAATCAGGAAGCTCTATTTCTCGTCAACAAAGCTACGGTAAGCCCTCATCACTTCCCCCACACGCGCAAGCACCCTAAATTGTATGATTTTAGTTCTATTTGGAGAATTAAGTATTTTCTCGTTGGTGGAATTGTTTCTAAAATTTGATCTGCTTATGTCTGCAAACTTCTTCACTGGTGCAGGAGATGTTTCTTTTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCGGGATCGCAAGAAGTCACTTGCTTACAAGCATCTATGTAATGTTTCTACTCTCTATTCTAATGCTGCAGTCTATCTTTATTCGTTGTTATAGTGCATAAAATGCGATAACTTTGTCCCATCCATTATTTATTTGCATCTCTTGCTTGGATTCTCACTGTTTTACCTTTACATTTGTTGTCTGGTTTTAATCTAAAAAGAAGGATAGACCTGTGAATTATATCATAGTATATTTCATACCAATTATGTATTAGAAAAGGGAGAGCATGGACCTGAAATAGTAGAGGGGATTACAACTCCACTAGCGTATTCCCATCATGACAGAGCTTTTAACATTTGTTGTGAGCGGCAATGTTTTCTGTAACGCCCACCGCTAGTCGATATTGTACTTTTTGGACTTTCCCTCTTATGTTAGGGGAGGTTTTCACTCCCTTGTAAGGAATGCTTAGTTCCCCTCTCCAATCAATAGGGATCTCATAATTCACTCCCCTACGGAGGAGGGCATCCTCGTTGGCACTCGTTCCCCTCTCCAATTGATGTGGGATCTCACAATCTACTCCTGTTCGGGGCTCAATATCTTCCTTGACACACTGCCCGGTGTCCAACCTCCTATGGGGCTTAATGTGGGATCTCACAATCCACCCCCTTCGGAGCTCAGTGTCTTCGCTAACACACCACTTGGTGTTCACCGCCCTTGGTGTCTGGCTTTGATACTGTAAGATCCCACGTTGGTTGGAGAGGGGGAACTAAGCATTTTTTGTAAGAGTGTGGAAACTTCTCGCTAGTAGACACATTTTAATTACCTTGAGGGAAGTCCAAAAGGGAAGGCCTAAAAAGGACAATATCTGCTAGCGGTGGACTTGGGCAGTTATATTTTCAATCGTGCTTCTTTCTTTCTGTATTCATGCTGCAAAGTGAATAGCAGCATGATGGTCATTTATTGGCTAGTGACAAGTAAGATATCACGATCATGGTCATAGGCTAACATGGATTACGACCTTAGATTTAGGTTACTCCAATTACTTGGTTAAGGGACTTGAATTATCAGCCTCAATCTATCATGGTAGTCTGTTGGAGAATCACTGATTTGTATTATCAGTGCATTTACTTTATGCTTTTGAAGAGACAATTTCCACAATGGCAGTAATAAGATTATCCTCTGTTGTTGCAGCATCAGTAGTTAGCAAAAGGAAACGATATGACTTTCTTTCAGGTACTACCTATTCATACATCCCACTTCATATTCCCAACTACTATTATAGACTCCTCATGAAACGTCATACTTTTTTTTTCCTCTCCAGATTTTGTCCCTGAAAAATTAAAATTTGAAGATGCAGTAAAGGAGATAGGCATGGCAGAGTCGGGGAAAGGCGAGGCGTCTTGATATTTCAACTCCATACTTCATCTTCTTCTTTGTATGTGTTATATTTAGTCATCTTTATTTTCCTCCGTACAGTTTGTACCTTGATAACAGGAATTCTTACCAAAGTTATTAACAAAATTTTTATTTTCTA

mRNA sequence

ATGGCTTCGACCGAAAGATCAAGTACCGAAATCAAGAGCAAAGAAGCGGGAACGTCGAAGCCACCTACCAAAACCAAAACCCTCAACGCCAGAAAATCAGATAAGAACGAATCGAAGAAGAAGAAGAAGAAGATTTACAGCAATAAGCATTCGAATAATGGCTCTGTGAAGGACGACGACGCTGTATTTATTTCTGCTCCAGGTTCCGCGTCGGAAGAGGAGGATGCCGGCGAGGACAGAGCCGAAACCACAAGTAAAAAAGCCAAGACCTCGAAATCGAAGGTAGGAAAATGGAACCATGTGAAGAAAGAAGAGAATGGATATGCAGAAGATGAAGAGGAAGAGGTCCAGGAGAAGATTTATACATTCCCTATGCAGCGGATCAAGAAAATCACGAGGGATGAAAATTCTGACTTTCGTATAAATCAGGAAGCTCTATTTCTCGTCAACAAAGCTACGGTAAGCCCTCATCACTTCCCCCACACGCGCAAGCACCCTAAATTGTATGATTTTAGTTCTATTTGGAGAATTAAGTATTTTCTCGTTGGTGGAATTGAGATGTTTCTTTTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCGGGATCGCAAGAAGTCACTTGCTTACAAGCATCTATCATCAGTAGTTAGCAAAAGGAAACGATATGACTTTCTTTCAGATTTTGTCCCTGAAAAATTAAAATTTGAAGATGCAGTAAAGGAGATAGGCATGGCAGAGTCGGGGAAAGGCGAGGCGTCTTGATATTTCAACTCCATACTTCATCTTCTTCTTTGTATGTGTTATATTTAGTCATCTTTATTTTCCTCCGTACAGTTTGTACCTTGATAACAGGAATTCTTACCAAAGTTATTAACAAAATTTTTATTTTCTA

Coding sequence (CDS)

ATGGCTTCGACCGAAAGATCAAGTACCGAAATCAAGAGCAAAGAAGCGGGAACGTCGAAGCCACCTACCAAAACCAAAACCCTCAACGCCAGAAAATCAGATAAGAACGAATCGAAGAAGAAGAAGAAGAAGATTTACAGCAATAAGCATTCGAATAATGGCTCTGTGAAGGACGACGACGCTGTATTTATTTCTGCTCCAGGTTCCGCGTCGGAAGAGGAGGATGCCGGCGAGGACAGAGCCGAAACCACAAGTAAAAAAGCCAAGACCTCGAAATCGAAGGTAGGAAAATGGAACCATGTGAAGAAAGAAGAGAATGGATATGCAGAAGATGAAGAGGAAGAGGTCCAGGAGAAGATTTATACATTCCCTATGCAGCGGATCAAGAAAATCACGAGGGATGAAAATTCTGACTTTCGTATAAATCAGGAAGCTCTATTTCTCGTCAACAAAGCTACGGTAAGCCCTCATCACTTCCCCCACACGCGCAAGCACCCTAAATTGTATGATTTTAGTTCTATTTGGAGAATTAAGTATTTTCTCGTTGGTGGAATTGAGATGTTTCTTTTACAATTTTGCAAAGATGCGTATGCTTGCTGTGCTCGGGATCGCAAGAAGTCACTTGCTTACAAGCATCTATCATCAGTAGTTAGCAAAAGGAAACGATATGACTTTCTTTCAGATTTTGTCCCTGAAAAATTAAAATTTGAAGATGCAGTAAAGGAGATAGGCATGGCAGAGTCGGGGAAAGGCGAGGCGTCTTGA

Protein sequence

MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWRIKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVKEIGMAESGKGEAS

Homology

[Close]

BLAST of CmoCh02G008860 vs. ExPASy TrEMBL
Match: A0A6J1H2H8 (DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459429 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.0e-106
Identity = 222/254 (87.40%), Postives = 222/254 (87.40%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDD 60
           MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDD
Sbjct: 1   MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDD 60

Query: 61  AVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKI 120
           AVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKI
Sbjct: 61  AVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKI 120

Query: 121 YTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWRIKYF 180
           YTFPMQRIKKITRDENSDFRINQEALFLVNKAT                           
Sbjct: 121 YTFPMQRIKKITRDENSDFRINQEALFLVNKAT--------------------------- 180

Query: 181 LVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAV 240
                EMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAV
Sbjct: 181 -----EMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAV 222

Query: 241 KEIGMAESGKGEAS 255
           KEIGMAESGKGEAS
Sbjct: 241 KEIGMAESGKGEAS 222

[Close]

BLAST of CmoCh02G008860 vs. ExPASy TrEMBL
Match: A0A6J1K264 (transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.2e-95
Identity = 206/258 (79.84%), Postives = 216/258 (83.72%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNES--KKKKKKIYSNKHSNNGSVKD 60
           MAST++S+ EIKSKEAGTSKP TKTKTLNARKSDKN+S  KKKKKKIYSNKHSNNGSVK+
Sbjct: 1   MASTKKSNAEIKSKEAGTSKPATKTKTLNARKSDKNDSKKKKKKKKIYSNKHSNNGSVKE 60

Query: 61  DDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYA--EDEEEEV 120
           DDAVFISAPGSASEEEDAGEDRAET SK+AKTSKSKVGKWNHVKKEENGYA  E+EEEE 
Sbjct: 61  DDAVFISAPGSASEEEDAGEDRAETRSKEAKTSKSKVGKWNHVKKEENGYAEQEEEEEEA 120

Query: 121 QEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWR 180
            EKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT                       
Sbjct: 121 HEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT----------------------- 180

Query: 181 IKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKF 240
                    EMFL+QFCKDAYACC+RDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKF
Sbjct: 181 ---------EMFLVQFCKDAYACCSRDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKF 226

Query: 241 EDAVKEIGMAESGKGEAS 255
           EDA+KEIGMAESGK EAS
Sbjct: 241 EDALKEIGMAESGKDEAS 226

[Close]

BLAST of CmoCh02G008860 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.1e-70
Identity = 172/262 (65.65%), Postives = 189/262 (72.14%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKT-------LNARKSDKNESKK--KKKKIYSNKHS 60
           MAS+++SSTE KSKEAGTSK  TKTK         NA KSDK+ SKK   KKKI + KH+
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVKDDDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAED 120
           NNGS +++D   ISAP SAS E+DA EDR ETTS+KA +SKSK  K NH KKEENGY E+
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEE--VQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLY 180
           EEEE  V+EKIY FPM RIKKITRDENSD RINQEALFLVNKAT                
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKAT---------------- 180

Query: 181 DFSSIWRIKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDF 240
                           EMFL+QFCKDAYACCA+DRKKSLAYKHLSSVV KRKRYDFLSDF
Sbjct: 181 ----------------EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDF 230

Query: 241 VPEKLKFEDAVKEIGMAESGKG 252
           VPEKLKFEDA+KE  MAESGKG
Sbjct: 241 VPEKLKFEDALKERSMAESGKG 230

[Close]

BLAST of CmoCh02G008860 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.7e-69
Identity = 167/253 (66.01%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKT-LNARKSDKNESKKKKKKIYSNKHSNNGSVKDD 60
           MAS+++SSTE K KEAGTSKP  K KT  NAR SDK  SKKKKKK   +  +NNGSVKD+
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  DAVFISAP-GSASEEEDAG-EDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQ 120
           + + +S P GSASE++DA  ED+AETTS+K KTSKSK  K NH K+E+NGYAE+EEEE +
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWRI 180
           EKIY FPM RIKKI RDENSD RINQEALFLVNKA+                        
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKAS------------------------ 180

Query: 181 KYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFE 240
                   EMFL+QFCKDAYACCA+DRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFE
Sbjct: 181 --------EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFE 221

Query: 241 DAVKEIGMAESGK 251
           DA+KE  MAESGK
Sbjct: 241 DALKERSMAESGK 221

[Close]

BLAST of CmoCh02G008860 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 8.8e-65
Identity = 165/265 (62.26%), Postives = 181/265 (68.30%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKT--------LNARKSDKNESKKKKKKIYSNKHSN 60
           MAS+++SS+E KSKEAGTSKP  K KT         NARK DK  SKKKK    +NKH++
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKDDDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDE 120
           NGSVK+++ + ISAPG      DA EDR ETTSK   TSKSK  K NH KKEENGYAE+E
Sbjct: 61  NGSVKENEVLPISAPG------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAEEE 120

Query: 121 -------EEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKH 180
                  EEE +EKIY FPM RIKKI RDENSD RINQEALFLVNKAT            
Sbjct: 121 EEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKAT------------ 180

Query: 181 PKLYDFSSIWRIKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDF 240
                               EMFL+QFCKDAYACCA+DRKKSLAYKHLSSVV KRKRYDF
Sbjct: 181 --------------------EMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDF 227

Query: 241 LSDFVPEKLKFEDAVKEIGMAESGK 251
           LSDFVPEKLKFEDA+KE  MAESGK
Sbjct: 241 LSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of CmoCh02G008860 vs. NCBI nr
Match: XP_022958105.1 (DNA polymerase epsilon subunit C-like [Cucurbita moschata])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 222/254 (87.40%), Postives = 222/254 (87.40%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDD 60
           MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDD
Sbjct: 1   MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDD 60

Query: 61  AVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKI 120
           AVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKI
Sbjct: 61  AVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEKI 120

Query: 121 YTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWRIKYF 180
           YTFPMQRIKKITRDENSDFRINQEALFLVNKAT                           
Sbjct: 121 YTFPMQRIKKITRDENSDFRINQEALFLVNKAT--------------------------- 180

Query: 181 LVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAV 240
                EMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAV
Sbjct: 181 -----EMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAV 222

Query: 241 KEIGMAESGKGEAS 255
           KEIGMAESGKGEAS
Sbjct: 241 KEIGMAESGKGEAS 222

[Close]

BLAST of CmoCh02G008860 vs. NCBI nr
Match: XP_023534490.1 (ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.9 bits (951), Expect = 8.6e-99
Identity = 215/261 (82.38%), Postives = 221/261 (84.67%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTK-TKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDD 60
           MAST++SSTEIKSKEAGTSKP TK TKTLNARKSDKN+SKKKKKKIYSNKHSNNGSVK+D
Sbjct: 1   MASTKKSSTEIKSKEAGTSKPATKTTKTLNARKSDKNDSKKKKKKIYSNKHSNNGSVKED 60

Query: 61  DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYA------EDEE 120
           DAVFISAPGSASEEEDAGE+RAETTSKKAKTSKSKVGKWNHVKKEENGYA      E+EE
Sbjct: 61  DAVFISAPGSASEEEDAGEERAETTSKKAKTSKSKVGKWNHVKKEENGYAEQEEEEEEEE 120

Query: 121 EEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSS 180
           EEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT                    
Sbjct: 121 EEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT-------------------- 180

Query: 181 IWRIKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 240
                       EMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK
Sbjct: 181 ------------EMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEK 229

Query: 241 LKFEDAVKEIGMAESGKGEAS 255
           LKFEDAVKEIGMAESGKGEAS
Sbjct: 241 LKFEDAVKEIGMAESGKGEAS 229

[Close]

BLAST of CmoCh02G008860 vs. NCBI nr
Match: KAG7013901.1 (Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.0 bits (933), Expect = 1.1e-96
Identity = 212/259 (81.85%), Postives = 218/259 (84.17%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTK-TKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDD 60
           MAST++SSTEIKSKEAGTSKP TK TKTLNARKSDKN+SKKKKKKIYSNKHSNNGSVK+ 
Sbjct: 1   MASTKKSSTEIKSKEAGTSKPATKITKTLNARKSDKNDSKKKKKKIYSNKHSNNGSVKEG 60

Query: 61  DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYA----EDEEEE 120
           DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYA    E+EEEE
Sbjct: 61  DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEQEQEEEEEE 120

Query: 121 VQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIW 180
           VQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT                      
Sbjct: 121 VQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT---------------------- 180

Query: 181 RIKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLK 240
                     EMFLLQFCKDAYACCARDRK+SLAYKHLSSVVSKRKRYDFLSDFVPEKLK
Sbjct: 181 ----------EMFLLQFCKDAYACCARDRKQSLAYKHLSSVVSKRKRYDFLSDFVPEKLK 227

Query: 241 FEDAVKEIGMAESGKGEAS 255
           FEDA KEI MAESGKGEAS
Sbjct: 241 FEDASKEIDMAESGKGEAS 227

[Close]

BLAST of CmoCh02G008860 vs. NCBI nr
Match: XP_022995531.1 (transcriptional activator HAP5-like [Cucurbita maxima])

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-94
Identity = 206/258 (79.84%), Postives = 216/258 (83.72%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTKTKTLNARKSDKNES--KKKKKKIYSNKHSNNGSVKD 60
           MAST++S+ EIKSKEAGTSKP TKTKTLNARKSDKN+S  KKKKKKIYSNKHSNNGSVK+
Sbjct: 1   MASTKKSNAEIKSKEAGTSKPATKTKTLNARKSDKNDSKKKKKKKKIYSNKHSNNGSVKE 60

Query: 61  DDAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYA--EDEEEEV 120
           DDAVFISAPGSASEEEDAGEDRAET SK+AKTSKSKVGKWNHVKKEENGYA  E+EEEE 
Sbjct: 61  DDAVFISAPGSASEEEDAGEDRAETRSKEAKTSKSKVGKWNHVKKEENGYAEQEEEEEEA 120

Query: 121 QEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWR 180
            EKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT                       
Sbjct: 121 HEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKAT----------------------- 180

Query: 181 IKYFLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKF 240
                    EMFL+QFCKDAYACC+RDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKF
Sbjct: 181 ---------EMFLVQFCKDAYACCSRDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKF 226

Query: 241 EDAVKEIGMAESGKGEAS 255
           EDA+KEIGMAESGK EAS
Sbjct: 241 EDALKEIGMAESGKDEAS 226

[Close]

BLAST of CmoCh02G008860 vs. NCBI nr
Match: KAG6605541.1 (Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.2 bits (744), Expect = 8.7e-75
Identity = 181/255 (70.98%), Postives = 186/255 (72.94%), Query Frame = 0


Query: 1   MASTERSSTEIKSKEAGTSKPPTK-TKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDD 60
           MAST++SSTEIKSKEAGTSKP TK TKTLNARKSDKN+SKKKKKKIYSNKHSNNGSVK+ 
Sbjct: 1   MASTKKSSTEIKSKEAGTSKPATKITKTLNARKSDKNDSKKKKKKIYSNKHSNNGSVKEG 60

Query: 61  DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSKVGKWNHVKKEENGYAEDEEEEVQEK 120
           DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSK                         
Sbjct: 61  DAVFISAPGSASEEEDAGEDRAETTSKKAKTSKSK------------------------- 120

Query: 121 IYTFPMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWRIKY 180
                  RIKKITRDENSDFRINQEALFLVNKAT                          
Sbjct: 121 -------RIKKITRDENSDFRINQEALFLVNKAT-------------------------- 180

Query: 181 FLVGGIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDA 240
                 EMFLLQFCKDAYACCARDRK+SLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDA
Sbjct: 181 ------EMFLLQFCKDAYACCARDRKQSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDA 191

Query: 241 VKEIGMAESGKGEAS 255
            KEI MAESGKGEAS
Sbjct: 241 SKEIDMAESGKGEAS 191

[Close]

BLAST of CmoCh02G008860 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14
Identity = 83/248 (33.47%), Postives = 126/248 (50.81%), Query Frame = 0


Query: 8   STEIKSKEAGTSKPPTKTKTLNARKSDKNESKKKKKKIYSNKHSNNGSVKDDDAVFISAP 67
           S  + +K +G SK  + ++T   + S+K    KKK +IY    S++      D+V     
Sbjct: 14  SDVVVNKASGRSKRSSGSRT--KKTSNKVNIVKKKPEIYEISESSS-----SDSV----- 73

Query: 68  GSASEEEDAGEDRAETTSKKAKTSKSK-VG---KWNHVKKEENGYAEDEEEEVQEKIYTF 127
               EE   G++  ++    +K    K VG   K +  ++E++G AED +         F
Sbjct: 74  ----EEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAEDAK-------IKF 133

Query: 128 PMQRIKKITRDENSDFRINQEALFLVNKATVSPHHFPHTRKHPKLYDFSSIWRIKYFLVG 187
           PM RI++I R +NS  +I Q+A+FLVNKAT                              
Sbjct: 134 PMNRIRRIMRSDNSAPQIMQDAVFLVNKAT------------------------------ 193

Query: 188 GIEMFLLQFCKDAYACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVK-- 247
             EMF+ +F ++AY    +D+KK + YKHLSSVVS  +RY+FL+D VPEKLK E A++  
Sbjct: 194 --EMFIERFSEEAYDSSVKDKKKFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEW 206

Query: 248 EIGMAESG 250
           E GM ++G
Sbjct: 254 ERGMTDAG 206

The following BLAST results are available for this feature:

BLAST of CmoCh02G008860 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G008860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2H8	6.0e-106	87.40	DNA polymerase epsilon subunit C-like OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A6J1K264	6.2e-95	79.84	transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 ...	[more]
A0A6J1CGZ0	4.1e-70	65.65	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]
A0A1S3CKU7	7.7e-69	66.01	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A6J1JF10	8.8e-65	62.26	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CmoCh02G008860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958105.1	1.2e-105	87.40	DNA polymerase epsilon subunit C-like [Cucurbita moschata]	[more]
XP_023534490.1	8.6e-99	82.38	ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG7013901.1	1.1e-96	81.85	Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_022995531.1	1.3e-94	79.84	transcriptional activator HAP5-like [Cucurbita maxima]	[more]
KAG6605541.1	8.7e-75	70.98	Chromatin accessibility complex 16kD protein, partial [Cucurbita argyrosperma su...	[more]

BLAST of CmoCh02G008860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	2.4e-14	33.47	nuclear factor Y, subunit C10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 79..232 e-value: 2.2E-19 score: 71.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 185..232
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 95..153
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 122..154 e-value: 2.0E-4 score: 21.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 19..247
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 19..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G008860.1	CmoCh02G008860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity