CmoCh02G008270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G008270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Histone H2B
Location	Cmo_Chr02: 5042757 .. 5043215 (-)
RNA-Seq Expression	CmoCh02G008270
Synteny	CmoCh02G008270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCCAAGGCTGAGAAGAAGCCCGCCGAGAAGAGACCGGCGGCGGAGAAGCCAGCCGAGGAAAAGAAATCCGTCGCCGAGAAAGCACCGGCGGAGAAAAAGCCCAAAGCAGGGAAGAAGCTTCCGAAGGAAGGCGGCGCCGCTGCCGTAGACAAGAAGAAGAAGAGATCGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTTCATCCAGACATAGGAATTTCCAGCAAGGCCATGGGTATCATGAATAGCTTCATCAACGATATCTTCGAGAAACTTGCTCAAGAATCATCCAAATTGGCTCGCTACAACAAGAAACCCACCATCACCTCCCGGGAGATCCAGACCGCCGTTAGGCTTGTTCTTCCCGGTGAACTGGCCAAGCACGCCGTTTCTGAGGGTACAAAGGCGGTGACTAAGTTCACAAGTTCTTAA

mRNA sequence

ATGGCACCCAAGGCTGAGAAGAAGCCCGCCGAGAAGAGACCGGCGGCGGAGAAGCCAGCCGAGGAAAAGAAATCCGTCGCCGAGAAAGCACCGGCGGAGAAAAAGCCCAAAGCAGGGAAGAAGCTTCCGAAGGAAGGCGGCGCCGCTGCCGTAGACAAGAAGAAGAAGAGATCGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTTCATCCAGACATAGGAATTTCCAGCAAGGCCATGGGTATCATGAATAGCTTCATCAACGATATCTTCGAGAAACTTGCTCAAGAATCATCCAAATTGGCTCGCTACAACAAGAAACCCACCATCACCTCCCGGGAGATCCAGACCGCCGTTAGGCTTGTTCTTCCCGGTGAACTGGCCAAGCACGCCGTTTCTGAGGGTACAAAGGCGGTGACTAAGTTCACAAGTTCTTAA

Coding sequence (CDS)

ATGGCACCCAAGGCTGAGAAGAAGCCCGCCGAGAAGAGACCGGCGGCGGAGAAGCCAGCCGAGGAAAAGAAATCCGTCGCCGAGAAAGCACCGGCGGAGAAAAAGCCCAAAGCAGGGAAGAAGCTTCCGAAGGAAGGCGGCGCCGCTGCCGTAGACAAGAAGAAGAAGAGATCGAAGAAGAGCGTAGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAACAGGTTCATCCAGACATAGGAATTTCCAGCAAGGCCATGGGTATCATGAATAGCTTCATCAACGATATCTTCGAGAAACTTGCTCAAGAATCATCCAAATTGGCTCGCTACAACAAGAAACCCACCATCACCTCCCGGGAGATCCAGACCGCCGTTAGGCTTGTTCTTCCCGGTGAACTGGCCAAGCACGCCGTTTCTGAGGGTACAAAGGCGGTGACTAAGTTCACAAGTTCTTAA

Protein sequence

MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of CmoCh02G008270 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 142/152 (93.42%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK     KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAA DKKKKR KK
Sbjct: 1   MAPKAEKKPAEK-----KPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of CmoCh02G008270 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-64
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPK EKKPAEK+PA EK    K +VAEKAPAEKKPKAGKKLPKEGG+AA +KKKKRSKK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh02G008270 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-63
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+PA+EKP EE KS AEKAPAEKKPKAGKKLPKE GA   DKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGAGG-DKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh02G008270 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 241.5 bits (615), Expect = 6.2e-63
Identity = 140/152 (92.11%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAP+AEKKPAEK+PAAEKP EE KS AEKAPAEKKPKAGKKLPKE GA   DKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGAGG-DKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh02G008270 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPK EKKPAEK+PA EK    K +VAEKAPAEKKPKAGKKLPKEGG+AA +KKKKRSKK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh02G008270 vs. ExPASy TrEMBL
Match: A0A6J1G728 (Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK
Sbjct: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. ExPASy TrEMBL
Match: A0A0A0KHC9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKA+KKPAEK+PA+EKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAA DKKKKR+KK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. ExPASy TrEMBL
Match: A0A067L707 (Histone H2B OS=Jatropha curcas OX=180498 GN=JCGZ_05673 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.6e-66
Identity = 144/152 (94.74%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+PA EKPAEEKK+VAEKAPAEKKPKAGKKLPKEGG+AAVDKKKKR+KK
Sbjct: 1   MAPKAEKKPAEKKPAGEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGSAAVDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAV+LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVKLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. ExPASy TrEMBL
Match: A0A5D3DK48 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.7e-66
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKA+KKPAEK+PA++KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAA DKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. ExPASy TrEMBL
Match: A0A1S3BIZ0 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.7e-66
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKA+KKPAEK+PA++KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAA DKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. NCBI nr
Match: XP_022947500.1 (histone H2B isoform X1 [Cucurbita moschata])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK
Sbjct: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. NCBI nr
Match: XP_023533056.1 (histone H1-II-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+PAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK
Sbjct: 165 MAPKAEKKPAEKKPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 224

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 225 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 284

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 285 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 316

[Close]

BLAST of CmoCh02G008270 vs. NCBI nr
Match: XP_004143093.1 (histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-66
Identity = 146/152 (96.05%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKA+KKPAEK+PA+EKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAA DKKKKR+KK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. NCBI nr
Match: XP_012064996.1 (histone H2B [Jatropha curcas] >KDP44206.1 hypothetical protein JCGZ_05673 [Jatropha curcas])

HSP 1 Score: 260.8 bits (665), Expect = 7.5e-66
Identity = 144/152 (94.74%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+PA EKPAEEKK+VAEKAPAEKKPKAGKKLPKEGG+AAVDKKKKR+KK
Sbjct: 1   MAPKAEKKPAEKKPAGEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGSAAVDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAV+LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVKLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. NCBI nr
Match: XP_028052986.1 (histone H2B-like [Camellia sinensis])

HSP 1 Score: 260.8 bits (665), Expect = 7.5e-66
Identity = 145/152 (95.39%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+PA+EKPAEEKK+VAEK PAEKKPKAGKKLPKEGGAAA DKKKKR+KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKTPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of CmoCh02G008270 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+PA+EKP EE KS AEKAPAEKKPKAGKKLPKE GA   DKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGAGG-DKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh02G008270 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 241.5 bits (615), Expect = 4.4e-64
Identity = 140/152 (92.11%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAP+AEKKPAEK+PAAEKP EE KS AEKAPAEKKPKAGKKLPKE GA   DKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGAGG-DKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CmoCh02G008270 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-62
Identity = 136/152 (89.47%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKA KKPAEK+PA + PAEE+K VAEKAPAEKKPKAGKKLPKE     V+KKKKR KK
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEK-VAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CmoCh02G008270 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-61
Identity = 138/153 (90.20%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKL-PKEGGAAAVDKKKKRSK 60
           MAP+AEKKPAEK+ AAE+P EE K+ AEKAPAEKKPKAGKKL PKE G    DKKKKRSK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKA-AEKAPAEKKPKAGKKLPPKEAG----DKKKKRSK 60

Query: 61  KSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120
           K+VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS
Sbjct: 61  KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITS 120

Query: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CmoCh02G008270 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 231.5 bits (589), Expect = 4.5e-61
Identity = 135/152 (88.82%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MAPKAEKKPAEKRPAAEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAVDKKKKRSKK 60
           MAPKAEKKPAEK+P       E+KS AEKAPAEKKPKAGKKLPKE GA   DKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPV------EEKSKAEKAPAEKKPKAGKKLPKEAGAGG-DKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

The following BLAST results are available for this feature:

BLAST of CmoCh02G008270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	5.1e-65	93.42	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	7.3e-64	91.45	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
P40283	3.6e-63	92.11	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
O23629	6.2e-63	92.11	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]
Q1SWQ1	1.1e-62	90.13	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]

BLAST of CmoCh02G008270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G728	3.5e-69	100.00	Histone H2B OS=Cucurbita moschata OX=3662 GN=LOC111451349 PE=3 SV=1	[more]
A0A0A0KHC9	1.2e-66	96.05	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1	[more]
A0A067L707	3.6e-66	94.74	Histone H2B OS=Jatropha curcas OX=180498 GN=JCGZ_05673 PE=3 SV=1	[more]
A0A5D3DK48	4.7e-66	95.39	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE...	[more]
A0A1S3BIZ0	4.7e-66	95.39	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1	[more]

BLAST of CmoCh02G008270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947500.1	7.2e-69	100.00	histone H2B isoform X1 [Cucurbita moschata]	[more]
XP_023533056.1	1.6e-68	99.34	histone H1-II-like [Cucurbita pepo subsp. pepo]	[more]
XP_004143093.1	2.6e-66	96.05	histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucum...	[more]
XP_012064996.1	7.5e-66	94.74	histone H2B [Jatropha curcas] >KDP44206.1 hypothetical protein JCGZ_05673 [Jatro...	[more]
XP_028052986.1	7.5e-66	95.39	histone H2B-like [Camellia sinensis]	[more]

BLAST of CmoCh02G008270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	2.6e-64	92.11	Histone superfamily protein	[more]
AT3G45980.1	4.4e-64	92.11	Histone superfamily protein	[more]
AT2G28720.1	1.4e-62	89.47	Histone superfamily protein	[more]
AT1G07790.1	1.2e-61	90.20	Histone superfamily protein	[more]
AT3G46030.1	4.5e-61	88.82	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 65..83 score: 80.55 coord: 84..104 score: 75.74 coord: 106..123 score: 76.51 coord: 123..136 score: 92.45 coord: 136..149 score: 92.65
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 55..151 e-value: 2.5E-73 score: 259.6
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 10..152
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 120..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 7..128 e-value: 3.3E-23 score: 82.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 25..152 e-value: 2.8E-60 score: 203.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 36..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 10..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G008270.1	CmoCh02G008270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity