CmoCh02G007800 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA ATGAATGCAAATCAAGCTTTCGTGGTTGATTTCCCCAGAGCAGCAATGGAGAAAGAACATAAATCCAGATTGCCTAAACCTCCGACCAGGTTACAGAAGCAGGCGCCGGCGAGTCTTCATCTCGATCAACTAACGAGTGTCTCAATGTCTTCTGGTAGTGCTGATATTTCTTCGAAGGCGGTTCTTCCTCTGCTATCGCCGCTCCCTTCATCGCCACAGCCTTTTCCTGAAACTGAGGGAAATAGAAGAGCAGCAAACGGAAATACCGTAGACGGCGGCTATGGCGATCAAAGAGGTATGTGTTTTGCACCTCCTGGTGGCTGGCAACATCCAGCGGTGGCGACGACATTCGCCGATCCATCTACTCTGTTTACGTTCTTTCAATCGCAGTGCATCGTAAACAGTAAGACGCCGTGA MNANQAFVVDFPRAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKAVLPLLSPLPSSPQPFPETEGNRRAANGNTVDGGYGDQRGMCFAPPGGWQHPAVATTFADPSTLFTFFQSQCIVNSKTP Homology
BLAST of CmoCh02G007800 vs. ExPASy TrEMBL
Match: A0A0A0KBQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50 Identity = 107/140 (76.43%), Postives = 117/140 (83.57%), Query Frame = 0
BLAST of CmoCh02G007800 vs. ExPASy TrEMBL
Match: A0A5A7V856 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00270 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43 Identity = 96/125 (76.80%), Postives = 103/125 (82.40%), Query Frame = 0
BLAST of CmoCh02G007800 vs. ExPASy TrEMBL
Match: A0A6J1D5B7 (uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017071 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28 Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = 0
BLAST of CmoCh02G007800 vs. ExPASy TrEMBL
Match: A0A6P3ZH11 (uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC107411018 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17 Identity = 62/112 (55.36%), Postives = 77/112 (68.75%), Query Frame = 0
BLAST of CmoCh02G007800 vs. ExPASy TrEMBL
Match: A0A2I4HTA9 (uncharacterized protein LOC108990495 OS=Juglans regia OX=51240 GN=LOC108990495 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 3.1e-16 Identity = 55/117 (47.01%), Postives = 70/117 (59.83%), Query Frame = 0
BLAST of CmoCh02G007800 vs. NCBI nr
Match: KAG6605440.1 (hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035388.1 hypothetical protein SDJN02_02184, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 273.5 bits (698), Expect = 1.0e-69 Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of CmoCh02G007800 vs. NCBI nr
Match: XP_038902307.1 (uncharacterized protein LOC120088941 [Benincasa hispida]) HSP 1 Score: 215.7 bits (548), Expect = 2.5e-52 Identity = 110/140 (78.57%), Postives = 118/140 (84.29%), Query Frame = 0
BLAST of CmoCh02G007800 vs. NCBI nr
Match: XP_011657141.1 (uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharacterized protein LOC116404357 [Cucumis sativus] >KAE8645882.1 hypothetical protein Csa_017707 [Cucumis sativus]) HSP 1 Score: 208.4 bits (529), Expect = 4.0e-50 Identity = 107/140 (76.43%), Postives = 117/140 (83.57%), Query Frame = 0
BLAST of CmoCh02G007800 vs. NCBI nr
Match: XP_023512816.1 (uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 204.9 bits (520), Expect = 4.4e-49 Identity = 105/139 (75.54%), Postives = 115/139 (82.73%), Query Frame = 0
BLAST of CmoCh02G007800 vs. NCBI nr
Match: KAG6570684.1 (hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010531.1 hypothetical protein SDJN02_27325, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 201.8 bits (512), Expect = 3.8e-48 Identity = 103/139 (74.10%), Postives = 115/139 (82.73%), Query Frame = 0
BLAST of CmoCh02G007800 vs. TAIR 10
Match: AT1G07473.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05 Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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