CmoCh02G007480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G007480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S18
Location	Cmo_Chr02: 4690127 .. 4691246 (+)
RNA-Seq Expression	CmoCh02G007480
Synteny	CmoCh02G007480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAATGTTACCATTATTCTAAGTACTTTTGAATTTATACAGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGGTGAGCATTCCTGAATTTCATTTACCTTGCCATTTTACTAATTCCCTTCTCATATCATTATGATAGCAAGGACCTGGAGTAAAACATGGTCGGAATTAATGGTAGCAGACCATTTCATCCACTGCAACTTTTCATATTCCGTAGCTACGTAGTCGGATGTGGAATATCTTATGATCAAACTTCTCATCTTTTAAATGTCATATGTTTATTTATGAACTCAAAGAAACAAATCTAGTCAATATGAGTAGTTTAGAACAGAAGGAGCCGTTGTGATTAGAAATTTGGTCTGCATCCTAGACACAGCGCAGTCATCAATAGCCATGGACCATCAATTTTTTCTTTTTATATAAATTGCAGCTAATCAATTCATGGGTTCCTGATATGGGTAGTGCCTCTTTCTAGCATTTGCTCGTTTGCAACATTAGAGAGGTCATGGAATTATCACTATCATTCTCATTGCTACCAGAAAATAGTTTGGCTATTAGTTGGTCTTTTTTGCCATTTAAATTATGTCCACGACTCTCTTGAGGAAGTTTATAATCCAGAGTACCTATCCAAGCTAAGAAAATGTGTTCTTGGAGTCGAATTGCATTTTATCTCGCATATCTAACAATTAGCAAATAGATGTTTGCAGAATGTTAGGTTTCTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGGTAAACTTTTCGAGCAAAACTCAGGTTTTGAACAAGTTGAGTCGTCAACCTTCATCTGACCTGATCATTTCAACAATTTTGCAGACAGGTATCAGTGCCAAAGCACAGAGGAAAGTTGCCCGTGAGATCAAAACAGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTCGATAAGGACTATGAATATGAAGTTTTCGAGAATAATACCGATGCAGATAGAGGACGCCCACATGGTTCCTAG

mRNA sequence

ATGCTTAATGTTACCATTATTCTAAGTACTTTTGAATTTATACAGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGACAGGTATCAGTGCCAAAGCACAGAGGAAAGTTGCCCGTGAGATCAAAACAGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTCGATAAGGACTATGAATATGAAGTTTTCGAGAATAATACCGATGCAGATAGAGGACGCCCACATGGTTCCTAG

Coding sequence (CDS)

ATGCTTAATGTTACCATTATTCTAAGTACTTTTGAATTTATACAGGATCTGGATCTAACAAAGCCTGGTGTACGCAAACCTCCCAAAAGAGTTGAGTTTCAGGTGACGACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAATTTTATTACCGATGCCGGGATCATTAACAAGAGGAGCAAGACAGGTATCAGTGCCAAAGCACAGAGGAAAGTTGCCCGTGAGATCAAAACAGCACGAGCTTTTGGCTTAATGCCTTTCACAACAATGGGAACCAAATCATTTGTTTTTGGGAAGACCATGGAGTATCTCGATAAGGACTATGAATATGAAGTTTTCGAGAATAATACCGATGCAGATAGAGGACGCCCACATGGTTCCTAG

Protein sequence

MLNVTIILSTFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRPHGS

Homology

[Close]

BLAST of CmoCh02G007480 vs. ExPASy Swiss-Prot
Match: P62659 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsR PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 21 KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAR 80
          K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+SAK QR +A+
Sbjct: 10 KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAK 69

Query: 81 EIKTARAFGLMPFT 95
           IK AR  GL+PFT
Sbjct: 70 TIKRARILGLLPFT 82

[Close]

BLAST of CmoCh02G007480 vs. ExPASy Swiss-Prot
Match: Q5SLQ0 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsR PE=1 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 21 KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAR 80
          K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+SAK QR +A+
Sbjct: 10 KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAK 69

Query: 81 EIKTARAFGLMPFT 95
           IK AR  GL+PFT
Sbjct: 70 TIKRARILGLLPFT 82

[Close]

BLAST of CmoCh02G007480 vs. ExPASy Swiss-Prot
Match: P80382 (30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-07
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 21 KPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAR 80
          K   R+P ++ + + T  E     D+RNV  L  F+++ G I  R +TG+S K QR +A+
Sbjct: 10 KEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAK 69

Query: 81 EIKTARAFGLMPFT 95
           IK AR  GL+PFT
Sbjct: 70 TIKRARILGLLPFT 82

[Close]

BLAST of CmoCh02G007480 vs. ExPASy Swiss-Prot
Match: Q8RIE4 (30S ribosomal protein S18 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=rpsR PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 29 KRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAF 88
          +R + +V  EE+    D++NV  L  F++D G IN    TG +AK QRK+A+ +K AR  
Sbjct: 7  RRAKLRVKAEEI----DYKNVELLKRFVSDKGKINPSRLTGANAKLQRKIAKAVKRARNI 66

Query: 89 GLMPFT 95
           L+P+T
Sbjct: 67 ALIPYT 68

[Close]

BLAST of CmoCh02G007480 vs. ExPASy Swiss-Prot
Match: O66476 (30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsR PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 24 VRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIK 83
          VR P K+V       E  R+ D++N   L NF+T+ G I  R +TG+ AK QR++A +IK
Sbjct: 3  VRAPKKKVCMYC---EQKREPDYKNYEELRNFLTERGRIKDRKQTGLCAKHQRRLAVQIK 62

Query: 84 TARAFGLMPF 94
           AR  GL+P+
Sbjct: 63 RARQLGLLPY 69

[Close]

BLAST of CmoCh02G007480 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.4e-60
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 206

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG
Sbjct: 207 GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 266

Query: 129 RPHGS 134
           RPHGS
Sbjct: 267 RPHGS 270

[Close]

BLAST of CmoCh02G007480 vs. ExPASy TrEMBL
Match: A0A6J1KYL3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX=3661 GN=LOC111499912 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.9e-56
Identity = 117/125 (93.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRFLANFITDAGIINKRSKT
Sbjct: 144 STYE-IKDLDLTKPGVRKLPKRVEFXVMTEEVLRXADFRNVRFLANFITDAGIINKRSKT 203

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMP TTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG
Sbjct: 204 GISAKAQRKVAREIKTARAFGLMPLTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 263

Query: 129 RPHGS 134
           RPHGS
Sbjct: 264 RPHGS 267

[Close]

BLAST of CmoCh02G007480 vs. ExPASy TrEMBL
Match: A0A6J1D4R9 (uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017003 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.8e-54
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDL KPGVRKPPKRVEFQVTTEEVL+KADFRNVRFLANFITDAGIINKRSKT
Sbjct: 148 STYE-IKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKT 207

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMPFTTMGTK+FVFGKTME LDKDYEYEVF+N  DADRG
Sbjct: 208 GISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVFGKTMEDLDKDYEYEVFDNTADADRG 267

Query: 129 RPHGS 134
            P GS
Sbjct: 268 HPLGS 271

[Close]

BLAST of CmoCh02G007480 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 112/125 (89.60%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGII KRSKT
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKT 206

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
            ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME LDKDYEYEVF+NN   D G
Sbjct: 207 RISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGG 266

Query: 129 RPHGS 134
            P GS
Sbjct: 267 HPLGS 267

[Close]

BLAST of CmoCh02G007480 vs. ExPASy TrEMBL
Match: A0A6J1FYC1 (uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC111448465 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E ++DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGII KRSKT
Sbjct: 147 STYE-VKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKT 206

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
            ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME LDKDYEYEVF+NN   D  
Sbjct: 207 RISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGE 266

Query: 129 RPHGS 134
            P GS
Sbjct: 267 HPLGS 267

[Close]

BLAST of CmoCh02G007480 vs. NCBI nr
Match: XP_023532312.1 (uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 9.2e-60
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT
Sbjct: 36  STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 95

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG
Sbjct: 96  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 155

Query: 129 RPHGS 134
           RPHGS
Sbjct: 156 RPHGS 159

[Close]

BLAST of CmoCh02G007480 vs. NCBI nr
Match: XP_022947026.1 (uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 9.2e-60
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 206

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG
Sbjct: 207 GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 266

Query: 129 RPHGS 134
           RPHGS
Sbjct: 267 RPHGS 270

[Close]

BLAST of CmoCh02G007480 vs. NCBI nr
Match: XP_023007407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima])

HSP 1 Score: 227.3 bits (578), Expect = 8.0e-56
Identity = 117/125 (93.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRK PKRVEF V TEEVLR ADFRNVRFLANFITDAGIINKRSKT
Sbjct: 144 STYE-IKDLDLTKPGVRKLPKRVEFXVMTEEVLRXADFRNVRFLANFITDAGIINKRSKT 203

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMP TTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG
Sbjct: 204 GISAKAQRKVAREIKTARAFGLMPLTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 263

Query: 129 RPHGS 134
           RPHGS
Sbjct: 264 RPHGS 267

[Close]

BLAST of CmoCh02G007480 vs. NCBI nr
Match: XP_022148322.1 (uncharacterized protein LOC111017003 [Momordica charantia])

HSP 1 Score: 220.3 bits (560), Expect = 9.8e-54
Identity = 113/125 (90.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDL KPGVRKPPKRVEFQVTTEEVL+KADFRNVRFLANFITDAGIINKRSKT
Sbjct: 148 STYE-IKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSKT 207

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
           GISAKAQRKVAREIKTARAFGLMPFTTMGTK+FVFGKTME LDKDYEYEVF+N  DADRG
Sbjct: 208 GISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVFGKTMEDLDKDYEYEVFDNTADADRG 267

Query: 129 RPHGS 134
            P GS
Sbjct: 268 HPLGS 271

[Close]

BLAST of CmoCh02G007480 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 3.9e-50
Identity = 112/125 (89.60%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 9   STFEFIQDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSKT 68
           ST+E I+DLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGII KRSKT
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSKT 206

Query: 69  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 128
            ISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTME LDKDYEYEVF+NN   D G
Sbjct: 207 RISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGG 266

Query: 129 RPHGS 134
            P GS
Sbjct: 267 HPLGS 267

[Close]

BLAST of CmoCh02G007480 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-36
Identity = 73/95 (76.84%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 34  QVTTEEVLRKADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPF 93
           +VTTEEVL+ ADFRNVRFLANFIT+AGII KR +TGISAKAQRK+AREIKTARAFGLMPF
Sbjct: 165 EVTTEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPF 224

Query: 94  TTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRG 129
           TTMGTK+F FGKTME  D+D+EYEV +++ + D G
Sbjct: 225 TTMGTKAFQFGKTMENRDQDFEYEVLDDDDEFDEG 259

The following BLAST results are available for this feature:

BLAST of CmoCh02G007480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62659	1.4e-07	41.89	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703...	[more]
Q5SLQ0	1.4e-07	41.89	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /...	[more]
P80382	4.2e-07	40.54	30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3	[more]
Q8RIE4	1.2e-06	40.91	30S ribosomal protein S18 OS=Fusobacterium nucleatum subsp. nucleatum (strain AT...	[more]
O66476	1.6e-06	42.86	30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsR PE=...	[more]

BLAST of CmoCh02G007480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G586	4.4e-60	97.60	uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KYL3	3.9e-56	93.60	LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX...	[more]
A0A6J1D4R9	4.8e-54	90.40	uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1JHF0	1.9e-50	89.60	uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513...	[more]
A0A6J1FYC1	2.1e-49	88.00	uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]

BLAST of CmoCh02G007480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532312.1	9.2e-60	97.60	uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo]	[more]
XP_022947026.1	9.2e-60	97.60	uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata]	[more]
XP_023007407.1	8.0e-56	93.60	LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 [Cucurbita maxima]	[more]
XP_022148322.1	9.8e-54	90.40	uncharacterized protein LOC111017003 [Momordica charantia]	[more]
XP_022986919.1	3.9e-50	89.60	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]

BLAST of CmoCh02G007480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07210.1	9.9e-36	76.84	Ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 83..93 score: 52.07 coord: 51..61 score: 33.33 coord: 69..83 score: 42.42
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 37..94 e-value: 1.5E-12 score: 45.5
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 44..91 e-value: 3.0E-16 score: 59.3
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 14..126
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 21..96 score: 15.314635
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 31..96 e-value: 5.4E-20 score: 72.9
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 24..94
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 14..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G007480.1	CmoCh02G007480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome