CmoCh02G006840 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G006840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ycf54-like protein
Location	Cmo_Chr02: 4337475 .. 4340056 (+)
RNA-Seq Expression	CmoCh02G006840
Synteny	CmoCh02G006840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGCATATTTGGCTGATTAATTTAGTTGGCCATTTCCACCATTTTTGATCTGCTCTTCAATCACAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGCAATTCGCCAAATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTTTCAACACAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGGTAATCGTTAGGTTTCCGAGATTCTTCCGCATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGATGTACATTGTTGTTCTAATTCAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTAAAAATTGTCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTGTTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTTTGCTTCGTTGGTTTGCCCTATTTCGTTCTTGAAATTTTGGGATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGTTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACTTGGATCACGTAAGCTACCTGTTTTCATTTTGCATTATTCACCCTGCTTTGCAATATTGCATTATATATAAAGGGCGTGGATCCAAAACTACAACCTTAGTTAGGAATAGGGGCATAAACACTAATGTCTAACAACTTGAATTATGCACTGCTCATTGGCTCGGATACTTTATCATGGAAACTTGGATCATCTTGAGGCCTAATAGATTACAAAAAAAAGGAAGATGCTACATGTGAGATCCCACATCGGTTAAGGAGGAGAACAAAGCTTCACTCCCTAGCAGACGGTTTTAAAAACCTTGAGAGAAACTCGAAAGGGAAAGTTCAAAGATAACAATATATACTAGCAGTGGACTTGAGTTATTATTACAAATGGTATCAGAGTTAGACACTGGACAATATGCCAGTGAGGAGGTTGAGCCTTGAAGGAGGTGGACACAAGGTGGTGTGCCAGCTAGAATGCTGGGCCCTGAAAGGGGGTGGATCGAGGGGTCCCATATTGATTGGAGAAGGGAATGAGTGCCAGTGAGCCCTGAAGGGGGTGGACACGAGGCGGTGTGCCATCAAGGACCCTGGGTCCCAAAGAGGGTGGATTGGGGGTTCCACATCGATTGGAGAAGGGAACGAGTGTTAGCGAGGACACTGGGTCCCCAATGGGGGTGGATTGTGAAATCTCACATCGGTTGGGGAGGAGAGCGAAACATTGTTTATAAGGATGTGAAACCCTCTCTCTAGGAAACGCGTTTTAAAAACAATTAGCTAGCGGTGGGCAAACAATTGGGTAGATAACAAATTTTGAAGGACTACTGGAGGCTTGAATATAATCAACAGTTGCAATGCATCTTAATTTTATAGTGCTTTGTTATTTGCATATGCTGACAGAACAACATTTACTCCCATCTTGTTTCTATAGATGCTTTTTGGATTCCTAGTTTCTATAGATGCGGTAATGCAAACTTACCTTGTTGAGAAGTTGTTTAGCAACAGCAACTCAAACTCATTTATGTTTAATAACCTCATTGTAAAAGGCCTCGTGTTCGGTATGAAATCGTACATTGTGGGCGAAGTTAAATGTTTACAATTACTACAAAAGTAGCTCGAAACTCAAATACTCCTGCATCTCCTGCAACAATGTCTTTGCTGAACAACCCATTTTAGTCCTTTCTTTTGTCGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAAGTGTAAGCTGTGTGTGATTTTCTTTAACGTCTTTAATCAAATATAATTTGGATGGTGTGAGGATTTGATAAACCATTTGTAGTTGGAAGGCAGTTTTTGATTATTCTAATGTGGTAAATGAGTATGATCAATTAAAGTGAGCATAGTCATCAAGAATTGACATGTACCTCGATTATGATTTGAATCCTGTAAGTATAGTACATGTACCTCGATTATGATTTGAATCCTGTAAGTATAGTACGTAATTTAATTAGTTAGTTCAGTAGTGGTTGACATGCAACATGCAAGTTCGCATGTAA

mRNA sequence

GTTTGCATATTTGGCTGATTAATTTAGTTGGCCATTTCCACCATTTTTGATCTGCTCTTCAATCACAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGCAATTCGCCAAATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTTTCAACACAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGTTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACTTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAATGGTTGACATGCAACATGCAAGTTCGCATGTAA

Coding sequence (CDS)

ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTTCAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCTTTCAACACAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGTTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACTTGGATCACGTTCATGAAGCTGAGACTGGACCGAGTTTTAGCCGAAAGCTACGAAGCCGATAGCTTAGAACAAGCATTGGCTTCTAACCCGACCAACATCGAGTTTGAGAAGCCCGAAAAATGGGTGGCTCCCTACCCCAAGTATGAATATGGATGGTGGGAGATTTTCTTGCCGCCAGTGACAAAAACAGAAGCAGAAGCAAAATGGTTGACATGCAACATGCAAGTTCGCATGTAA

Protein sequence

MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFASRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAKWLTCNMQVRM

Homology

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BLAST of CmoCh02G006840 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.4e-13
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRP 151
           YY+ +A+ KF+L EEE F E+L ER R Y E++KE DFW VI+P FL        + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 152 A--VALVSTNSTWITFMKLRLDRVLAESYEA--DSLEQALAS 190
              VA+VSTN ++I ++KLRL+ VL   +EA  D++   LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

[Close]

BLAST of CmoCh02G006840 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-10
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLE-----RFPNITK 151
           YYF +A+  F+L EE    E+  ER+ YY   +KE DFWL+  PKFL      +F N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 152 RLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 185
            +   A+A++STNS +I ++KLR+  V    +E DSL+
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE-DSLK 96

[Close]

BLAST of CmoCh02G006840 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKR--LQ 151
           YYF +A+  F+L  +E   E+  ER+ YY   +K  DFWL+  P FLE+   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 152 RPAVALVSTNSTWITFMKLRLDRVLAESYEADSLE 185
           + AVA++STN  +I ++KLR+  +    +E D+L+
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFE-DNLQ 96

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BLAST of CmoCh02G006840 vs. ExPASy TrEMBL
Match: A0A6J1G6K2 (uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC111451246 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.0e-123
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180
           AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA
Sbjct: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180

Query: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 230
           DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK
Sbjct: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 229

[Close]

BLAST of CmoCh02G006840 vs. ExPASy TrEMBL
Match: A0A6J1KY44 (uncharacterized protein LOC111499783 OS=Cucurbita maxima OX=3661 GN=LOC111499783 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.2e-105
Identity = 206/230 (89.57%), Postives = 212/230 (92.17%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGT NLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCR LSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTANLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSP     AAVNDQ+VSS SA EQESNKY+FVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSP-----AAVNDQLVSSYSAGEQESNKYHFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180
           A R+KEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA
Sbjct: 121 AARNKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180

Query: 181 DSLEQA-LASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 230
           DSL +  L + PT+ EFEKPEKW APYPKYEYGWWEI LPPVTKTEAEAK
Sbjct: 181 DSLNKHWLLTRPTS-EFEKPEKWAAPYPKYEYGWWEISLPPVTKTEAEAK 224

[Close]

BLAST of CmoCh02G006840 vs. ExPASy TrEMBL
Match: A0A6J1D8T3 (uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017973 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.7e-99
Identity = 190/231 (82.25%), Postives = 208/231 (90.04%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAM+T  Q  A+KSLAS R  HH+HCR LSLP G  +ASG +SCF  
Sbjct: 1   MLGTVNLVMGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLP 60

Query: 61  SRG---SSPFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           SRG   SSPF+TAIAAVN +Q+VSSD AD+QE+NKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  SRGSSPSSPFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRYY ER+KEQDFWLVIEPKFLE+FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRYYGERNKEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           SYEA+S E+A+ASNPTNIEFEKPEKWVAPYPKYEYGWWE FLPPVTK EA+
Sbjct: 181 SYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKAEAK 231

[Close]

BLAST of CmoCh02G006840 vs. ExPASy TrEMBL
Match: A0A6J1FW50 (uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC111449035 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.8e-96
Identity = 190/231 (82.25%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG S+ F +
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 61  SRGSS---PFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
            RGSS    FNTAIAAVN DQIVSSDSAD++ESNKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LR Y ER+KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           SYEA+SLE+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV K EA+
Sbjct: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAK 231

[Close]

BLAST of CmoCh02G006840 vs. ExPASy TrEMBL
Match: A0A6J1JCP0 (uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.1e-96
Identity = 189/232 (81.47%), Postives = 205/232 (88.36%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG SS F +
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLS 60

Query: 61  SRGSS----PFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFE 120
            RGSS     F TA+AAVN DQIVSSDSAD++ESNKYYF+VANAKFMLDEEEHF+ELLFE
Sbjct: 61  HRGSSLSFLRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFE 120

Query: 121 RLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180
           RLR Y ER+KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA
Sbjct: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180

Query: 181 ESYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           ESYEA+SLE+ALAS PTN+EFEKPEKWVAPY KYEYGWWE FLPPV K EA+
Sbjct: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAK 232

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: XP_022947359.1 (uncharacterized protein LOC111451246 [Cucurbita moschata])

HSP 1 Score: 451.1 bits (1159), Expect = 6.2e-123
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180
           AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA
Sbjct: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180

Query: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 230
           DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK
Sbjct: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 229

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: KAG6605371.1 (putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 447.6 bits (1150), Expect = 6.8e-122
Identity = 227/229 (99.13%), Postives = 228/229 (99.56%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSS+AAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSPFN AIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSPFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180
           AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA
Sbjct: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180

Query: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 230
           DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK
Sbjct: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 229

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: XP_023533874.1 (uncharacterized protein LOC111795592 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.4e-114
Identity = 218/229 (95.20%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAMLTSTQCT+MKSLASFRIGHHSHCR LSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTVNLVMGSSSAAMLTSTQCTSMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SR SSP     AAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRRSSP-----AAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180
           AER+KEQDFWLVIEPKFLERFPNIT+RLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA
Sbjct: 121 AERNKEQDFWLVIEPKFLERFPNITRRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180

Query: 181 DSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 230
           DSLEQALASNPTNIEFEKPEKW APYPKYEYGWWEIFLPPVTKTEAEAK
Sbjct: 181 DSLEQALASNPTNIEFEKPEKWEAPYPKYEYGWWEIFLPPVTKTEAEAK 224

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: XP_023007237.1 (uncharacterized protein LOC111499783 [Cucurbita maxima])

HSP 1 Score: 389.8 bits (1000), Expect = 1.7e-104
Identity = 206/230 (89.57%), Postives = 212/230 (92.17%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGT NLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCR LSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTANLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSP     AAVNDQ+VSS SA EQESNKY+FVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSP-----AAVNDQLVSSYSAGEQESNKYHFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180
           A R+KEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA
Sbjct: 121 AARNKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEA 180

Query: 181 DSLEQA-LASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAEAK 230
           DSL +  L + PT+ EFEKPEKW APYPKYEYGWWEI LPPVTKTEAEAK
Sbjct: 181 DSLNKHWLLTRPTS-EFEKPEKWAAPYPKYEYGWWEISLPPVTKTEAEAK 224

[Close]

BLAST of CmoCh02G006840 vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia])

HSP 1 Score: 370.2 bits (949), Expect = 1.4e-98
Identity = 190/231 (82.25%), Postives = 208/231 (90.04%), Query Frame = 0


Query: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSSSAAM+T  Q  A+KSLAS R  HH+HCR LSLP G  +ASG +SCF  
Sbjct: 1   MLGTVNLVMGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLP 60

Query: 61  SRG---SSPFNTAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           SRG   SSPF+TAIAAVN +Q+VSSD AD+QE+NKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  SRGSSPSSPFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180
           LRYY ER+KEQDFWLVIEPKFLE+FPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE
Sbjct: 121 LRYYGERNKEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 181 SYEADSLEQALASNPTNIEFEKPEKWVAPYPKYEYGWWEIFLPPVTKTEAE 228
           SYEA+S E+A+ASNPTNIEFEKPEKWVAPYPKYEYGWWE FLPPVTK EA+
Sbjct: 181 SYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKAEAK 231

[Close]

BLAST of CmoCh02G006840 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-59
Identity = 124/210 (59.05%), Postives = 146/210 (69.52%), Query Frame = 0


Query: 18  TSTQCTAMKSLASFRIGHHSHCRPLSLPS-GLPSASGFSSCFFASRGSSPFNTAIAAVND 77
           T+  C     L S      +    LS PS  LPS          S  SS F TA  ++  
Sbjct: 15  TAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPS----------SHFSSSFKTAATSIEQ 74

Query: 78  QIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPK 137
           Q     S ++ ES KY+F+VANAKFMLDEEEHF+E LFERLRY+ ER   QDFWLVIEPK
Sbjct: 75  Q----SSVNKGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGERELVQDFWLVIEPK 134

Query: 138 FLERFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEADSLEQALASNPTNIEF 197
           FL+ FP IT+RL+RPAVALVSTN TWITFMKLRLDRVL +S+EA SL++ALASNPT +EF
Sbjct: 135 FLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALASNPTTLEF 194

Query: 198 EKPEKWVAPYPKYEYGWWEIFLPPVTKTEA 227
           +KP+ WVAPYPKYE GWW+ FLP VT+  A
Sbjct: 195 DKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

The following BLAST results are available for this feature:

BLAST of CmoCh02G006840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P72777	5.4e-13	46.08	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51204	3.3e-10	40.82	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
Q1XDT3	3.1e-08	36.84	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of CmoCh02G006840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6K2	3.0e-123	100.00	uncharacterized protein LOC111451246 OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]
A0A6J1KY44	8.2e-105	89.57	uncharacterized protein LOC111499783 OS=Cucurbita maxima OX=3661 GN=LOC111499783...	[more]
A0A6J1D8T3	6.7e-99	82.25	uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1FW50	1.8e-96	82.25	uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1JCP0	4.1e-96	81.47	uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525...	[more]

BLAST of CmoCh02G006840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947359.1	6.2e-123	100.00	uncharacterized protein LOC111451246 [Cucurbita moschata]	[more]
KAG6605371.1	6.8e-122	99.13	putative protein ycf54, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023533874.1	1.4e-114	95.20	uncharacterized protein LOC111795592 [Cucurbita pepo subsp. pepo]	[more]
XP_023007237.1	1.7e-104	89.57	uncharacterized protein LOC111499783 [Cucurbita maxima]	[more]
XP_022149576.1	1.4e-98	82.25	uncharacterized protein LOC111017973 [Momordica charantia]	[more]

BLAST of CmoCh02G006840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58250.1	1.8e-59	59.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Ycf54 protein	PFAM	PF10674	Ycf54	coord: 91..180 e-value: 2.3E-34 score: 117.5
IPR019616	Ycf54 protein	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 13..225
IPR038409	Ycf54-like superfamily	GENE3D	3.30.70.1860	Uncharacterised protein family Ycf54	coord: 89..201 e-value: 4.6E-38 score: 131.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006840.1	CmoCh02G006840.1	mRNA