CmoCh02G006650 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G006650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L20
LocationCmo_Chr02: 4185192 .. 4186573 (-)
RNA-Seq ExpressionCmoCh02G006650
SyntenyCmoCh02G006650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTATGTGCATTTCCCTTGAATATTGTTCTTCATTAGACTACTGCAGTTGTTTTTGTTATTTCAATGAGTAACTGTGCCTCTTAAGAATTACTCTTCGTTTTGAATTTCTCAATTTGCTTTCGTTCTTCCTTTCTCTTTCTTGTTTTTTTTTTTTTTATGAAAATAATGATAATATATTATAATGAAAAATAATTTAGAAAAAAAGATTTGGATGGGGATCAGGGATCTCTGAACCCACAAAAAAGTTATTAGAGAAATTTCCCATCTAGAATGTGAATACTTTTACATTCTAAACCTCTGATATTCTCACGTAATTTTTTTAAAGAGAAACAATTTCATTGATGAATGTAATTTACAAAACAAAAGGGTAAGGTTAAAGACCCCAACCCAAGGGACAATAGACTTCTCCAATTAGATAAAGAGAGTCAAGGCTATATAGATGAAAAAACTCGGACAATTTACACCAGGATATCATGTAGCTATCAAAATGACATAGTCGAAATAAGTATCAAAGACTTCAGCTTTTCCCTTGATATTAAAGTTTATAATTTCCATCTTTGATATTCCCACATCCCATAATTTTAGCTTCTGACTTGGCCCTTCAATACTTTCTAGAATTTATTTCTGTAGTTTATGCCAATTTAACCTTCCTGGAATGCTGCTTTCATTTCACGTGGTTCGTGAATTTTACCTCTTTTTGTTTGAACAGCCTGAGTTTAAGAGAAATGAAAACTGCTTTCTGTCAAATAATTACTTTATACTTGTGTTCTGCACGATCAAGCTGCTTCTAGCTACTTTAATAAACCCTACTTGGGGAACACGTTAACTATTCATATTGTTCTAAAATTTTTGTAGGTTTCTTACTTTCTACATCGATGTCAATTGCCTCTTATTTCCAATCAATTGTGAATTCTTTAACATGTTATTCATATTTATCTTATATATATTTGGACAATCTCCCATGTCTACTGACGTTTCTTTTGACTCCCTGCCTACCGTACCAGGTAAATTATGGAAATTTCATGCATGGGCTGATGAAGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

mRNA sequence

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTAAATTATGGAAATTTCATGCATGGGCTGATGAAGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTAAATTATGGAAATTTCATGCATGGGCTGATGAAGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDGISVVL
Homology
[Close]
BLAST of CmoCh02G006650 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-31
Identity = 63/101 (62.38%), Postives = 82/101 (81.19%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RL+G+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y  FMHGL +  I+++RKVLS+++  EP SFK+LV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]
BLAST of CmoCh02G006650 vs. ExPASy Swiss-Prot
Match: Q5FH69 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-29
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R YG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]
BLAST of CmoCh02G006650 vs. ExPASy Swiss-Prot
Match: Q5HC39 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rplT PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-29
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R YG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]
BLAST of CmoCh02G006650 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y +F+HGL   NI LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]
BLAST of CmoCh02G006650 vs. ExPASy Swiss-Prot
Match: Q2VYY8 (50S ribosomal protein L20 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-28
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           KI KLAKG+RGR+  C R+A ++VEKAL+Y+YRDRR KKR+ R+LWIQRINAG+R YG+ 
Sbjct: 16  KILKLAKGYRGRSSTCFRVAIQKVEKALRYAYRDRRAKKRNFRALWIQRINAGSRAYGLP 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y  FM GL K  I L+RKVLS++++ EP +FKSLV+ ++ A
Sbjct: 76  YSRFMDGLKKAGIALDRKVLSDIAIREPDAFKSLVEKAQAA 116

[Close]
BLAST of CmoCh02G006650 vs. ExPASy TrEMBL
Match: A0A6J1G662 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111451238 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.1e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG
Sbjct: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISVVL 126
           ISVVL
Sbjct: 121 ISVVL 125

[Close]
BLAST of CmoCh02G006650 vs. ExPASy TrEMBL
Match: A0A6J1KY75 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.1e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISVVL 126
           ISVVL
Sbjct: 121 ISVVL 125

[Close]
BLAST of CmoCh02G006650 vs. ExPASy TrEMBL
Match: A0A6J1D684 (50S ribosomal protein L20 OS=Momordica charantia OX=3673 GN=LOC111018005 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.2e-61
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120

Query: 121 ISVVL 126
           IS+V+
Sbjct: 121 ISIVV 125

[Close]
BLAST of CmoCh02G006650 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISVVL 126
           +S+V+
Sbjct: 121 VSMVV 125

[Close]
BLAST of CmoCh02G006650 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.8e-61
Identity = 117/125 (93.60%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISVVL 126
           +S+++
Sbjct: 121 VSMIV 125

[Close]
BLAST of CmoCh02G006650 vs. NCBI nr
Match: XP_022947351.1 (uncharacterized protein LOC111451238 [Cucurbita moschata])

HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG
Sbjct: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISVVL 126
           ISVVL
Sbjct: 121 ISVVL 125

[Close]
BLAST of CmoCh02G006650 vs. NCBI nr
Match: XP_023007267.1 (uncharacterized protein LOC111499805 [Cucurbita maxima] >XP_023532681.1 uncharacterized protein LOC111794775 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 6.4e-63
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISVVL 126
           ISVVL
Sbjct: 121 ISVVL 125

[Close]
BLAST of CmoCh02G006650 vs. NCBI nr
Match: KAG7035310.1 (rplT, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.4 bits (633), Expect = 3.2e-62
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG
Sbjct: 61  HGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120

Query: 121 ISVVL 126
           ISVVL
Sbjct: 121 ISVVL 125

[Close]
BLAST of CmoCh02G006650 vs. NCBI nr
Match: XP_022149620.1 (uncharacterized protein LOC111018005 [Momordica charantia] >XP_022149621.1 uncharacterized protein LOC111018005 [Momordica charantia])

HSP 1 Score: 244.6 bits (623), Expect = 4.6e-61
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PPKKDG
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120

Query: 121 ISVVL 126
           IS+V+
Sbjct: 121 ISIVV 125

[Close]
BLAST of CmoCh02G006650 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima])

HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 118/125 (94.40%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISVVL 126
           +S+V+
Sbjct: 121 VSMVV 125

[Close]
BLAST of CmoCh02G006650 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 210.7 bits (535), Expect = 6.8e-55
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 0 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFK+LVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ISVV 125
           IS +
Sbjct: 121 ISSI 124

[Close]
BLAST of CmoCh02G006650 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-10
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0 

Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENIQLNRKVLSELSM 90
           V  +Y  F+H L K+ + LNRK+L+++++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

The following BLAST results are available for this feature:
BLAST of CmoCh02G006650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B6IPJ86.7e-3162.3850S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX... [more]
Q5FH693.7e-2958.4250S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=... [more]
Q5HC393.7e-2958.4250S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494... [more]
Q3YSX06.3e-2960.4050S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=... [more]
Q2VYY83.1e-2860.4050S ribosomal protein L20 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70... [more]
BLAST of CmoCh02G006650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G6628.1e-64100.0050S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111451238 PE=3 SV=... [more]
A0A6J1KY753.1e-6399.2050S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111499805 PE=3 SV=1[more]
A0A6J1D6842.2e-6194.4050S ribosomal protein L20 OS=Momordica charantia OX=3673 GN=LOC111018005 PE=3 SV... [more]
A0A6J1JCG12.9e-6194.4050S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1[more]
A0A6J1FUI33.8e-6193.6050S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=... [more]
BLAST of CmoCh02G006650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947351.11.7e-63100.00uncharacterized protein LOC111451238 [Cucurbita moschata][more]
XP_023007267.16.4e-6399.20uncharacterized protein LOC111499805 [Cucurbita maxima] >XP_023532681.1 uncharac... [more]
KAG7035310.13.2e-6298.40rplT, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022149620.14.6e-6194.40uncharacterized protein LOC111018005 [Momordica charantia] >XP_022149621.1 uncha... [more]
XP_022985864.16.0e-6194.40uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharac... [more]
BLAST of CmoCh02G006650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G16740.16.8e-5583.06Ribosomal protein L20 [more]
ATCG00660.15.1e-1038.20ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 64..90
score: 39.84
coord: 1..30
score: 33.03
coord: 31..60
score: 58.08
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..98
e-value: 3.7E-41
score: 139.6
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 3..102
e-value: 3.9E-38
score: 128.2
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..124
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 43..59
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 1..104
score: 22.152069
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 5..100
e-value: 3.90496E-50
score: 153.024
NoneNo IPR availableGENE3D6.10.160.10coord: 1..44
e-value: 3.7E-20
score: 73.8
NoneNo IPR availablePANTHERPTHR10986:SF1650S RIBOSOMAL PROTEIN L20coord: 1..124
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 45..106
e-value: 2.1E-26
score: 93.3
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G006650.1CmoCh02G006650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome