CmoCh02G006490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G006490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Membrane lipoprotein, putative
Location	Cmo_Chr02: 4042622 .. 4043062 (-)
RNA-Seq Expression	CmoCh02G006490
Synteny	CmoCh02G006490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGTCGATCCATCAATTGGACGTGTATTAATATGGATCGTTACTTTCATTCTCTTCCTCTCTGTTCTCAGCGGCGGCGGATGCCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCGTTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCATAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGGCAATCAAAGGCAAAGCAATTCATCATCAAACAGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACAATGGGGTCGTAA

mRNA sequence

ATGTCTTTGGTCGATCCATCAATTGGACGTGTATTAATATGGATCGTTACTTTCATTCTCTTCCTCTCTGTTCTCAGCGGCGGCGGATGCCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCGTTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCATAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGGCAATCAAAGGCAAAGCAATTCATCATCAAACAGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACAATGGGGTCGTAA

Coding sequence (CDS)

ATGTCTTTGGTCGATCCATCAATTGGACGTGTATTAATATGGATCGTTACTTTCATTCTCTTCCTCTCTGTTCTCAGCGGCGGCGGATGCCTTTTGATGTATATTACCCTACCTGAGACCGAAAACACCGCATGGCTACCGGTCGCAGGCTTGTCGTTGGTCTGCCTCCCTTGGTTCTTTTGGTTCTTAACTTTCTTGTATAGAATCATCTCACGTGCATGTGGTTTTAGAGTCTCTCTTGGCTTAGTTGTGAACGAAGATGCAGCGGCAACAAATAACGAAAATGCCGATAATAATACTCATAATGAATCCCCTCAAAGTGATGCAGGGTGTCAGGCTAATAAGGAGGACGGCAATCAAAGGCAAAGCAATTCATCATCAAACAGCTCGGGAGCGTCTCGTGAAAGTGAAAAGCCATTAGCCATAACAATGGGGTCGTAA

Protein sequence

MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFFWFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQRQSNSSSNSSGASRESEKPLAITMGS

Homology

[Close]

BLAST of CmoCh02G006490 vs. ExPASy TrEMBL
Match: A0A6J1G7P7 (uncharacterized protein LOC111451588 OS=Cucurbita moschata OX=3662 GN=LOC111451588 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
           WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120

Query: 121 RQSNSSSNSSGASRESEKPLAITMGS 147
           RQSNSSSNSSGASRESEKPLAITMGS
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITMGS 146

[Close]

BLAST of CmoCh02G006490 vs. ExPASy TrEMBL
Match: A0A0A0LJX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.6e-40
Identity = 99/153 (64.71%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S+LSGGGCLLMY+ LPETE TAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN-----ESPQSDAGCQANK 120
           W LTF YR++SRACGFRVSLG+  +    ++NN NA+NN +N     ES Q D G + N+
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGAD---VSSNNANANNNNNNNASSAESAQQDVGERDNE 120

Query: 121 EDGN--QRQSNSSSNSSGASRESEKPLAITMGS 147
           ++ N  QR SNSSSN+S  SRESE PLAITM S
Sbjct: 121 DNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of CmoCh02G006490 vs. ExPASy TrEMBL
Match: A0A6J1EV39 (uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC111438319 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.6e-39
Identity = 97/149 (65.10%), Postives = 114/149 (76.51%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLVDPS GR  +W V F LFL +LSGG CLL+YI LPETE+TAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGN- 120
           W LTF YR+ISRACGFRVSL +  + +    ++ N +NN+  ESP+ DA  QA +EDGN 
Sbjct: 61  WILTFFYRVISRACGFRVSLAMATSANDTNDDDNNNNNNSSGESPRCDARAQA-EEDGNN 120

Query: 121 --QRQSNSSSNSSGASRESEKPLAITMGS 147
             QR+SN SSN+S  SRESE P AI+MGS
Sbjct: 121 DDQRRSNLSSNNSIMSRESEIPFAISMGS 148

[Close]

BLAST of CmoCh02G006490 vs. ExPASy TrEMBL
Match: A0A1S3CDW9 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S++SGGGCLLMY+ LPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATN-NENADNNTHN----ESPQSDAGCQANK 120
           W LTF YR+ISRACG+RVSLG    ED    N N+N +NN +N    ESP+ D G + N+
Sbjct: 61  WLLTFFYRVISRACGYRVSLG--TGEDVGTNNVNDNNNNNNNNASSAESPRQDVGERGNE 120

Query: 121 EDGN--QRQSNSSSNSSGASRESEKPLAITMGS 147
           ++ N  QR+SNSSSN+S  SRESE PLAITM S
Sbjct: 121 DNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of CmoCh02G006490 vs. ExPASy TrEMBL
Match: A0A5A7TCV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00470 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.4e-38
Identity = 96/154 (62.34%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S++SGGGCLLMY+ LPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN------ESPQSDAGCQAN 120
           W LTF YR+ISRACG+RVSLG   +     TNN N +NN +N      ESP+ D G + N
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGAD---VGTNNVNDNNNNNNNNASSAESPRQDVGERGN 120

Query: 121 KEDGN--QRQSNSSSNSSGASRESEKPLAITMGS 147
           +++ N  QR+SNSSSN+S  SRESE PLAITM S
Sbjct: 121 EDNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: XP_022947828.1 (uncharacterized protein LOC111451588 [Cucurbita moschata])

HSP 1 Score: 276.9 bits (707), Expect = 9.7e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
           WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120

Query: 121 RQSNSSSNSSGASRESEKPLAITMGS 147
           RQSNSSSNSSGASRESEKPLAITMGS
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITMGS 146

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: KAG7035293.1 (hypothetical protein SDJN02_02088, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLVDPSIGRVLIWIVTF+LFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSIGRVLIWIVTFVLFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
           WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNT NESPQSDAGCQANKED NQ
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTRNESPQSDAGCQANKEDSNQ 120

Query: 121 RQSNSSSNSSGASRESEKPLAITMGS 147
           RQSNSSSNSSGASRESEKPLAIT GS
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITTGS 146

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: KAG6605337.1 (hypothetical protein SDJN03_02654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267.3 bits (682), Expect = 7.7e-68
Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLVDPSIGRVLIWIVTF+LFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSIGRVLIWIVTFVLFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
           WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNT NESPQSDAG QANKEDGNQ
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTRNESPQSDAGSQANKEDGNQ 120

Query: 121 RQSNSSSNSSGASRESEKPLAITMGS 147
           RQSNSSSNSSGASRESEKPLAIT GS
Sbjct: 121 RQSNSSSNSSGASRESEKPLAITTGS 146

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: XP_023533092.1 (uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.3 bits (682), Expect = 7.7e-68
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLVDPS+GRVLIWIVTF+LF SVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSVGRVLIWIVTFVLFFSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDGNQ 120
           WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKED NQ
Sbjct: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHNESPQSDAGCQANKEDVNQ 120

Query: 121 RQSNSSSNSSGASRESEKPLAITMGS 147
           RQSNSSSN SGASRESEKPLAITM S
Sbjct: 121 RQSNSSSNGSGASRESEKPLAITMAS 146

[Close]

BLAST of CmoCh02G006490 vs. NCBI nr
Match: XP_038900833.1 (uncharacterized protein LOC120087896 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.9e-43
Identity = 104/151 (68.87%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GR  IWIVT  LF S++SGGGCLLMY+ LPETE TAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVN--EDAAATNNENADNNTHNESPQSDAGCQANKED- 120
           W LTF YR+ISRACGFRVS+G+ V+   D A  NN N +NN   ESP+ D G + ++ED 
Sbjct: 61  WLLTFFYRVISRACGFRVSIGIGVDVGADNANANNNNNNNNASAESPRHDGGDRVDEEDD 120

Query: 121 --GNQRQSNSSSNSSGASRESEKPLAITMGS 147
             G+QR+SNSSSN+S ASRESE PLAITMGS
Sbjct: 121 DNGDQRRSNSSSNNSIASRESEMPLAITMGS 151

[Close]

BLAST of CmoCh02G006490 vs. TAIR 10
Match: AT4G30770.1 (Putative membrane lipoprotein )

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-18
Identity = 68/164 (41.46%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 1   MSLVDPSIGRVLIWIVTFILFLSVLSGGGCLLMYITLPETENTAWLPVAGLSLVCLPWFF 60
           M + DP  G+  I ++T  LFLS+  GGGCL+ Y  LP      WL   G+  VCLPWFF
Sbjct: 1   MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILPYP--PVWLSYLGIVFVCLPWFF 60

Query: 61  WFLTFLYRIISRACGFRVSLGLVVNEDAAATNNENADNNTHN--------ESPQSD---- 120
           W LTF YRI+SR  GFR+ +G          NN N +  T +        ESP  D    
Sbjct: 61  WILTFAYRIVSRTFGFRMVVG-----SGGNNNNANGETMTRDLDPPEQSLESPDDDDPEP 120

Query: 121 ----AGCQANKEDGNQ--RQSNSSSNSSGASRESEKPLAITMGS 147
                G      +GNQ  ++ ++SSNS+ AS ESE PLAI+M S
Sbjct: 121 IAHPQGQVLVSIEGNQSKKRMSTSSNSTIASHESEMPLAISMAS 157

The following BLAST results are available for this feature:

BLAST of CmoCh02G006490 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G006490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7P7	4.7e-71	100.00	uncharacterized protein LOC111451588 OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]
A0A0A0LJX6	5.6e-40	64.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1	[more]
A0A6J1EV39	1.6e-39	65.10	uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A1S3CDW9	6.2e-39	63.40	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1	[more]
A0A5A7TCV0	1.4e-38	62.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh02G006490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947828.1	9.7e-71	100.00	uncharacterized protein LOC111451588 [Cucurbita moschata]	[more]
KAG7035293.1	2.6e-68	97.26	hypothetical protein SDJN02_02088, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6605337.1	7.7e-68	97.26	hypothetical protein SDJN03_02654, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023533092.1	7.7e-68	95.89	uncharacterized protein LOC111795084 [Cucurbita pepo subsp. pepo]	[more]
XP_038900833.1	2.9e-43	68.87	uncharacterized protein LOC120087896 [Benincasa hispida]	[more]

BLAST of CmoCh02G006490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30770.1	1.6e-18	41.46	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..146
None	No IPR available	PANTHER	PTHR34964	MEMBRANE LIPOPROTEIN-RELATED	coord: 5..144
None	No IPR available	PANTHER	PTHR34964:SF3	MEMBRANE LIPOPROTEIN-RELATED	coord: 5..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006490.1	CmoCh02G006490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane