CmoCh02G006480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G006480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr02: 4040486 .. 4040821 (+)
RNA-Seq Expression	CmoCh02G006480
Synteny	CmoCh02G006480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTCAGAAAAAGGAAGAAGATAATTTAACTGCTCCTGCCAGTTCCTCTGGGTTTTTGGGTAAACTGGAAGAGAAGTATAAGGAACTCAAAGAGAATGCAGAAACATATCCTTATGTGTGGGGCTCATACATTGTTGTCTATGGTGGTTTTGCTCTTTGGACTGGCTATAGATGGAGAAAGCTTCGGAAGACCGAGGATCGAGTACGTGCCCTACAGGAGAAGCTTCGACAACGTTACGAAGCCGAACAGTCTGCCAAACAATCGGCCAATTCAGTGGCATCAGTTGAAAAAGTCTCACAATCTGTTAAACAGCCTCCTTCCAATCAGTAA

mRNA sequence

ATGGAAACTCAGAAAAAGGAAGAAGATAATTTAACTGCTCCTGCCAGTTCCTCTGGGTTTTTGGGTAAACTGGAAGAGAAGTATAAGGAACTCAAAGAGAATGCAGAAACATATCCTTATGTGTGGGGCTCATACATTGTTGTCTATGGTGGTTTTGCTCTTTGGACTGGCTATAGATGGAGAAAGCTTCGGAAGACCGAGGATCGAGTACGTGCCCTACAGGAGAAGCTTCGACAACGTTACGAAGCCGAACAGTCTGCCAAACAATCGGCCAATTCAGTGGCATCAGTTGAAAAAGTCTCACAATCTGTTAAACAGCCTCCTTCCAATCAGTAA

Coding sequence (CDS)

ATGGAAACTCAGAAAAAGGAAGAAGATAATTTAACTGCTCCTGCCAGTTCCTCTGGGTTTTTGGGTAAACTGGAAGAGAAGTATAAGGAACTCAAAGAGAATGCAGAAACATATCCTTATGTGTGGGGCTCATACATTGTTGTCTATGGTGGTTTTGCTCTTTGGACTGGCTATAGATGGAGAAAGCTTCGGAAGACCGAGGATCGAGTACGTGCCCTACAGGAGAAGCTTCGACAACGTTACGAAGCCGAACAGTCTGCCAAACAATCGGCCAATTCAGTGGCATCAGTTGAAAAAGTCTCACAATCTGTTAAACAGCCTCCTTCCAATCAGTAA

Protein sequence

METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ

Homology

[Close]

BLAST of CmoCh02G006480 vs. ExPASy TrEMBL
Match: A0A6J1G8F0 (uncharacterized protein LOC111451821 OS=Cucurbita moschata OX=3662 GN=LOC111451821 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ
Sbjct: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 111

[Close]

BLAST of CmoCh02G006480 vs. ExPASy TrEMBL
Match: A0A6J1L783 (uncharacterized protein LOC111499806 OS=Cucurbita maxima OX=3661 GN=LOC111499806 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           ME QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   MEAQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVR LQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ
Sbjct: 61  RKLRKTEDRVRVLQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 111

[Close]

BLAST of CmoCh02G006480 vs. ExPASy TrEMBL
Match: A0A6J1D6P5 (uncharacterized protein LOC111017444 OS=Momordica charantia OX=3673 GN=LOC111017444 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           MET KKEED +T PA+SSGF+GKLE+KY+E+KENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METPKKEEDEVTTPATSSGFMGKLEQKYREIKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVR LQEKLR+RYEAE    QSA+SVASVEK   SVKQP S +
Sbjct: 61  RKLRKTEDRVRXLQEKLRRRYEAE----QSASSVASVEKDPPSVKQPSSKE 107

[Close]

BLAST of CmoCh02G006480 vs. ExPASy TrEMBL
Match: A0A1S3CCY7 (uncharacterized protein LOC103499620 OS=Cucumis melo OX=3656 GN=LOC103499620 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 4  QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
          ++K  D L   +SSS F GKL  KY+E+KENAE YPYVWGSYI+VYGG  LW GYRWRKL
Sbjct: 6  EEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKL 65

Query: 64 RKTEDRVRALQEKLRQRYEAEQSA-KQSANSV 95
          RKTEDRVR LQEKLRQ YEAEQS+ KQSANSV
Sbjct: 66 RKTEDRVRILQEKLRQHYEAEQSSIKQSANSV 97

[Close]

BLAST of CmoCh02G006480 vs. ExPASy TrEMBL
Match: A0A5D3BSB4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00480 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.4e-27
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 4  QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
          ++K  D L   +SSS F GKL  KY+E+KENAE YPYVWGSYI+VYGG  LW GYRWRKL
Sbjct: 6  EEKGGDKLNGVSSSSSFSGKLVHKYREIKENAEKYPYVWGSYIIVYGGMFLWAGYRWRKL 65

Query: 64 RKTEDRVRALQEKLRQRYEAEQSA-KQSANSV 95
          RKTEDRVR LQEKLRQ YEAEQS+ KQSANSV
Sbjct: 66 RKTEDRVRILQEKLRQHYEAEQSSIKQSANSV 97

[Close]

BLAST of CmoCh02G006480 vs. NCBI nr
Match: XP_022948157.1 (uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948158.1 uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948159.1 uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_023534704.1 uncharacterized protein LOC111796195 [Cucurbita pepo subsp. pepo] >XP_023534706.1 uncharacterized protein LOC111796195 [Cucurbita pepo subsp. pepo] >KAG7035292.1 hypothetical protein SDJN02_02087 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ
Sbjct: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 111

[Close]

BLAST of CmoCh02G006480 vs. NCBI nr
Match: KAG6605336.1 (hypothetical protein SDJN03_02653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSN 111
           RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSN
Sbjct: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSN 110

[Close]

BLAST of CmoCh02G006480 vs. NCBI nr
Match: XP_023007268.1 (uncharacterized protein LOC111499806 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 5.0e-51
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           ME QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   MEAQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVR LQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ
Sbjct: 61  RKLRKTEDRVRVLQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 111

[Close]

BLAST of CmoCh02G006480 vs. NCBI nr
Match: XP_022148881.1 (uncharacterized protein LOC111017444 [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-39
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   METQKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRW 60
           MET KKEED +T PA+SSGF+GKLE+KY+E+KENAETYPYVWGSYIVVYGGFALWTGYRW
Sbjct: 1   METPKKEEDEVTTPATSSGFMGKLEQKYREIKENAETYPYVWGSYIVVYGGFALWTGYRW 60

Query: 61  RKLRKTEDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVSQSVKQPPSNQ 112
           RKLRKTEDRVR LQEKLR+RYEAE    QSA+SVASVEK   SVKQP S +
Sbjct: 61  RKLRKTEDRVRXLQEKLRRRYEAE----QSASSVASVEKDPPSVKQPSSKE 107

[Close]

BLAST of CmoCh02G006480 vs. NCBI nr
Match: XP_038900834.1 (uncharacterized protein LOC120087898 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 6.5e-35
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 4  QKKEEDNLTAPASSSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 63
          ++KEED L   ASS GFLGKLEEKY+E+KENAETYPYVWGSYIVVYGGFALWTGYRWRKL
Sbjct: 6  EEKEEDKLYGVASSIGFLGKLEEKYREIKENAETYPYVWGSYIVVYGGFALWTGYRWRKL 65

Query: 64 RKTEDRVRALQEKLRQRYEAEQ-SAKQSANSV 95
          RKTEDRVR LQEKLRQRYEAEQ SAKQSANSV
Sbjct: 66 RKTEDRVRVLQEKLRQRYEAEQSSAKQSANSV 97

[Close]

BLAST of CmoCh02G006480 vs. TAIR 10
Match: AT5G09270.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-25
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 8   EDNLTAPAS-SSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKT 67
           ED  + P+  + GF+G +EE+YK+L+++AE YPYVWGSY VVYGG  LWT YRWRKLR+T
Sbjct: 9   EDQESQPSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRT 68

Query: 68  EDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVS 102
           EDRVR LQ KLR+  E EQ+A  ++ S  SV+K S
Sbjct: 69  EDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSS 103

[Close]

BLAST of CmoCh02G006480 vs. TAIR 10
Match: AT5G09270.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-25
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 8   EDNLTAPAS-SSGFLGKLEEKYKELKENAETYPYVWGSYIVVYGGFALWTGYRWRKLRKT 67
           ED  + P+  + GF+G +EE+YK+L+++AE YPYVWGSY VVYGG  LWT YRWRKLR+T
Sbjct: 9   EDQESQPSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAYRWRKLRRT 68

Query: 68  EDRVRALQEKLRQRYEAEQSAKQSANSVASVEKVS 102
           EDRVR LQ KLR+  E EQ+A  ++ S  SV+K S
Sbjct: 69  EDRVRGLQTKLRKLVENEQAAVTASKSAQSVDKSS 103

The following BLAST results are available for this feature:

BLAST of CmoCh02G006480 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G006480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8F0	2.2e-52	100.00	uncharacterized protein LOC111451821 OS=Cucurbita moschata OX=3662 GN=LOC1114518...	[more]
A0A6J1L783	2.4e-51	98.20	uncharacterized protein LOC111499806 OS=Cucurbita maxima OX=3661 GN=LOC111499806...	[more]
A0A6J1D6P5	2.1e-39	80.18	uncharacterized protein LOC111017444 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A1S3CCY7	1.4e-27	73.91	uncharacterized protein LOC103499620 OS=Cucumis melo OX=3656 GN=LOC103499620 PE=...	[more]
A0A5D3BSB4	1.4e-27	73.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh02G006480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948157.1	4.5e-52	100.00	uncharacterized protein LOC111451821 [Cucurbita moschata] >XP_022948158.1 unchar...	[more]
KAG6605336.1	1.7e-51	100.00	hypothetical protein SDJN03_02653, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023007268.1	5.0e-51	98.20	uncharacterized protein LOC111499806 [Cucurbita maxima]	[more]
XP_022148881.1	4.4e-39	80.18	uncharacterized protein LOC111017444 [Momordica charantia]	[more]
XP_038900834.1	6.5e-35	88.04	uncharacterized protein LOC120087898 [Benincasa hispida]	[more]

BLAST of CmoCh02G006480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09270.1	6.5e-25	58.95	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G09270.2	6.5e-25	58.95	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..111
None	No IPR available	PANTHER	PTHR36794	TRANSMEMBRANE PROTEIN	coord: 3..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006480.1	CmoCh02G006480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane