CmoCh02G006370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G006370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MYB transcription factor
Location	Cmo_Chr02: 3965223 .. 3967135 (-)
RNA-Seq Expression	CmoCh02G006370
Synteny	CmoCh02G006370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGATCAAGAAGCAGCAGCAGCAGCAGTGGTGGTGGTGGCGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGGCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGTATTGTTAATTTCATCTCCAAATTTCTCTCTCTATGAACGGCTGCGCCGCCGTGGCCGGCGGAGTATAGAATGGTTTTCCGATGAGGGTTTTCAATACTGTTTATTTATTTATTTATTTTGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGTTGAAAAACATATATTAAATAACATTTTTGACGTTTTTAATTCAAAATTTGTAAGGATTTAATTGAAAAATTGATAGCTTGAAGGAGTGAAGTAAAAAAAAAAAATCATTAATTAAACAAAATTTTACTCTTTATAATTTTTGAGGATATGTTCTTTAATATTCTTTTAAAATTTTTGTTTTTGTAGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTAATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCTAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACAACAACAACATCCTAAGGTCTCGTCATTGCTTATTGTCCTTTTCGAACGTCCTCCAATCCTCCCATCAGAAGATGACCCCTAAATGGAGTCCTCTCACGGCGGGTCCGATGCTCGAAAATGGCCGTGGGAAGTCGGTGGCGGCGGTGGCATCGTCGGGTTCGGGTGAGAGAGAGGAAGAGATGAAGGGGGAGAAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCTTAGTTTAGCAAAGTGAGAATTTTGTTATGGAGTGTGAGTTTCTCCTTGGTTGTCAAATGTAAGAGCAATAATGAATTTCCAACTATATTATATGAGAAAG

mRNA sequence

ATGATAGGATCAAGAAGCAGCAGCAGCAGCAGTGGTGGTGGTGGCGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGGCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTAATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCTAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACAACAACAACATCCTAAGGTCTCGTCATTGCTTATTGTCCTTTTCGAACGTCCTCCAATCCTCCCATCAGAAGATGACCCCTAAATGGAGTCCTCTCACGGCGGGTCCGATGCTCGAAAATGGCCGTGGGAAGTCGGTGGCGGCGGTGGCATCGTCGGGTTCGGGTGAGAGAGAGGAAGAGATGAAGGGGGAGAAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCTTAGTTTAGCAAAGTGAGAATTTTGTTATGGAGTGTGAGTTTCTCCTTGGTTGTCAAATGTAAGAGCAATAATGAATTTCCAACTATATTATATGAGAAAG

Coding sequence (CDS)

ATGATAGGATCAAGAAGCAGCAGCAGCAGCAGTGGTGGTGGTGGCGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGGCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTAATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCTAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACAACAACAACATCCTAAGGTCTCGTCATTGCTTATTGTCCTTTTCGAACGTCCTCCAATCCTCCCATCAGAAGATGACCCCTAAATGGAGTCCTCTCACGGCGGGTCCGATGCTCGAAAATGGCCGTGGGAAGTCGGTGGCGGCGGTGGCATCGTCGGGTTCGGGTGAGAGAGAGGAAGAGATGAAGGGGGAGAAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCTTAG

Protein sequence

MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS

Homology

[Close]

BLAST of CmoCh02G006370 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.5e-46
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 28  CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTE 87
           C RGHWRPAED KLR+LVEQFGP NWN IA+    RSGKSCRLRW+NQLDP IN+NPFTE
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 88  EEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 135
           EEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR RER
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRER 109

[Close]

BLAST of CmoCh02G006370 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 2.4e-44
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 17  GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQL 76
           GG G G  G  C RGHWRPAED KL+ LV Q+GPQNWN IAE  + RSGKSCRLRW+NQL
Sbjct: 36  GGHGGGVQGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQL 95

Query: 77  DPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFT 136
           DP IN+  FTEEEEERL+   R +GNKWALIAR F GRTDNAVKNH+HV+MARR RE+  
Sbjct: 96  DPRINRRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSG 155

Query: 137 IF 139
            F
Sbjct: 156 AF 157

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BLAST of CmoCh02G006370 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 0


Query: 26  VTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPF 85
           + C RGHWRPAED KL+ LVEQ+GP NWN IA     RSGKSCRLRW+NQLDP IN+NPF
Sbjct: 2   IMCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPF 61

Query: 86  TEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER-----FTIFTN 145
           TEEEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR R+          T+
Sbjct: 62  TEEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTS 121

Query: 146 NNNILRSRHCLLS 154
           +++++ S   ++S
Sbjct: 122 SSSLMASEQIMMS 134

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BLAST of CmoCh02G006370 vs. ExPASy Swiss-Prot
Match: Q6R053 (Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.9e-42
Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 21  SGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNI 80
           SG +   C RGHWRP ED KL++LV QFGPQNWN I+ H   RSGKSCRLRW+NQLDP I
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 81  NKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 134
           NK  FTEEEE RLL   R +GNKWALI+R F GRTDNAVKNH+HVIMARR RE
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of CmoCh02G006370 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.3e-41
Identity = 98/236 (41.53%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 19  CGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDP 78
           CG  SS  +  RGHWRPAED KL++LV  +GPQNWN IAE  + RSGKSCRLRW+NQLDP
Sbjct: 97  CGH-SSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 156

Query: 79  NINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIF 138
            IN+  FTEEEEERL+   RL+GNKWA+IAR F GRTDN+VKNH+HVIMAR+ RE+ + +
Sbjct: 157 RINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSY 216

Query: 139 TNNNNILRSRHCL--------------LSFSNVLQSSHQKMT------PKWSPLTAGPML 198
                ++  +  +              L+ +++  S H+++       P +      P++
Sbjct: 217 RRRKTMVSLKPLINPNPHIFNDFDPTRLALTHLASSDHKQLMLPVPCFPGYDHENESPLM 276

Query: 199 EN---------------GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGS 220
            +                   +   +  +G  E  E +  EKK   PF DFLG+G+
Sbjct: 277 VDMFETQMMVGDYIAWTQEATTFDFLNQTGKSEIFERINEEKKP--PFFDFLGLGT 329

[Close]

BLAST of CmoCh02G006370 vs. ExPASy TrEMBL
Match: A0A6J1G7J0 (transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111451467 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.5e-121
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF 60
           MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF
Sbjct: 3   MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF 62

Query: 61  EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK 120
           EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK
Sbjct: 63  EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK 122

Query: 121 NHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLEN 180
           NHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLEN
Sbjct: 123 NHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLEN 182

Query: 181 GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS
Sbjct: 183 GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 222

[Close]

BLAST of CmoCh02G006370 vs. ExPASy TrEMBL
Match: A0A6J1KY48 (transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111499785 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.4e-111
Identity = 209/222 (94.14%), Postives = 212/222 (95.50%), Query Frame = 0


Query: 1   MIGSRSSSSSSGGGGG-GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEH 60
           MI SRSSSSSSGGGGG GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEH
Sbjct: 1   MIRSRSSSSSSGGGGGSGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEH 60

Query: 61  FEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAV 120
           FEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQ+LHGNKWALIARH KGRTDNAV
Sbjct: 61  FEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQQLHGNKWALIARHLKGRTDNAV 120

Query: 121 KNHYHVIMARRRRERFTIFT-NNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPML 180
           KNHYHVIMARRRRERFTIFT NNNNILRSRHCLL FSNVLQSSHQK+TPKWSPLT GP L
Sbjct: 121 KNHYHVIMARRRRERFTIFTNNNNNILRSRHCLLPFSNVLQSSHQKITPKWSPLTVGPTL 180

Query: 181 ENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           ENGRGKS A VASSGS EREEEMKGE+KRRIPFIDFLGMGSS
Sbjct: 181 ENGRGKSAAVVASSGSDEREEEMKGEQKRRIPFIDFLGMGSS 222

[Close]

BLAST of CmoCh02G006370 vs. ExPASy TrEMBL
Match: A0A6J1EVU5 (transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111438332 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.3e-88
Identity = 178/225 (79.11%), Postives = 190/225 (84.44%), Query Frame = 0


Query: 1   MIGSRSSSS--SSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 60
           M+ SRSSSS  SSGG GGGGC  G+S V+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE
Sbjct: 1   MMRSRSSSSGGSSGGVGGGGC--GNSSVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 60

Query: 61  HFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNA 120
           HFE RSGKSCRLRWYNQLDPNINKNPFTEEEEERLL+FQ+LHGNKWALIARHFKGRTDNA
Sbjct: 61  HFEGRSGKSCRLRWYNQLDPNINKNPFTEEEEERLLMFQQLHGNKWALIARHFKGRTDNA 120

Query: 121 VKNHYHVIMARRRRERFTIFT--NNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGP 180
           VKNHYHVIMARRRRERFTIFT  NNNNILR+RH LL FS VLQSS QK   KW+PL A  
Sbjct: 121 VKNHYHVIMARRRRERFTIFTNHNNNNILRTRHSLLPFSKVLQSSQQKTAVKWTPLMATT 180

Query: 181 MLENGRGK-SVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           +L +G G  +  A   SGS EREE+     KRR+PFIDFLGMGSS
Sbjct: 181 VLRHGGGMLAPTAAVVSGSDEREEQ-----KRRVPFIDFLGMGSS 218

[Close]

BLAST of CmoCh02G006370 vs. ExPASy TrEMBL
Match: A0A6J1I2H4 (transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111470309 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.2e-87
Identity = 176/225 (78.22%), Postives = 190/225 (84.44%), Query Frame = 0


Query: 1   MIGSRSSSS--SSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 60
           M+ SRSSSS  SSGG GGGGC  G+S V+CYRGHWRPAEDNKLRQLVEQ GPQNWNYIAE
Sbjct: 1   MMRSRSSSSGGSSGGVGGGGC--GNSSVSCYRGHWRPAEDNKLRQLVEQLGPQNWNYIAE 60

Query: 61  HFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNA 120
           HFE RSGKSCRLRWYNQLDPNINKNPFTEEEEERLL+FQ+LHGNKWALIARHFKGRTDNA
Sbjct: 61  HFEGRSGKSCRLRWYNQLDPNINKNPFTEEEEERLLMFQQLHGNKWALIARHFKGRTDNA 120

Query: 121 VKNHYHVIMARRRRERFTIFT--NNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGP 180
           VKNHYHVIMARRRRERFTIFT  NNNNILR+RH LL FS VLQSSHQK   KW+PL A  
Sbjct: 121 VKNHYHVIMARRRRERFTIFTNHNNNNILRTRHSLLPFSKVLQSSHQKTAIKWTPLMATT 180

Query: 181 MLENGRGK-SVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           +L +G G  +  A  + GS ERE++     KRR+PFIDFLGMGSS
Sbjct: 181 VLRHGGGMLAPTATVAVGSDEREDQ-----KRRVPFIDFLGMGSS 218

[Close]

BLAST of CmoCh02G006370 vs. ExPASy TrEMBL
Match: A0A5D3BQW6 (Transcriptional activator Myb OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00600 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.8e-83
Identity = 176/226 (77.88%), Postives = 187/226 (82.74%), Query Frame = 0


Query: 1   MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF 60
           M+ SRSSSSS G  GGGG   GSSGV+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF
Sbjct: 1   MMRSRSSSSSGGSSGGGG---GSSGVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF 60

Query: 61  EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK 120
           E RSGKSCRLRWYNQLDPNINKNPF+EEEEERLL+FQ+LHGNKWALIARHFKGRTDNAVK
Sbjct: 61  EGRSGKSCRLRWYNQLDPNINKNPFSEEEEERLLMFQQLHGNKWALIARHFKGRTDNAVK 120

Query: 121 NHYHVIMARRRRERFTIFTNNN-NILRSRHCLLSFSNVLQSSHQKMTP--KWSPLTAGP- 180
           NHYHVIMARRRRERFTIFTN+N N    RH LLSFS        KMT   KW+PLTAG  
Sbjct: 121 NHYHVIMARRRRERFTIFTNHNKNNNTIRHSLLSFS--------KMTTAVKWTPLTAGAP 180

Query: 181 -MLENGRGK-SVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
            +L NGRGK S+ AV +SGSGE E+      KRRIPFIDFLGMGSS
Sbjct: 181 VLLGNGRGKSSLTAVVASGSGEGEDH-----KRRIPFIDFLGMGSS 210

[Close]

BLAST of CmoCh02G006370 vs. NCBI nr
Match: XP_022947674.1 (transcription factor CSA-like [Cucurbita moschata])

HSP 1 Score: 443.0 bits (1138), Expect = 1.5e-120
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF 60
           MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF
Sbjct: 3   MIGSRSSSSSSGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHF 62

Query: 61  EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK 120
           EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK
Sbjct: 63  EARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVK 122

Query: 121 NHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLEN 180
           NHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLEN
Sbjct: 123 NHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPMLEN 182

Query: 181 GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS
Sbjct: 183 GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 222

[Close]

BLAST of CmoCh02G006370 vs. NCBI nr
Match: XP_023533866.1 (transcription factor CSA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.4e-112
Identity = 211/222 (95.05%), Postives = 213/222 (95.95%), Query Frame = 0


Query: 1   MIGSRSSSSSS--GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 60
           MIGSRSSSSSS  GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE
Sbjct: 3   MIGSRSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 62

Query: 61  HFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNA 120
           HFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNA
Sbjct: 63  HFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNA 122

Query: 121 VKNHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPML 180
           VKNHYHVIMARRRRERFTIFTNN+NILRSRHCLL FSNVLQSSHQKMTPKWSPLTAGP L
Sbjct: 123 VKNHYHVIMARRRRERFTIFTNNSNILRSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTL 182

Query: 181 ENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           ENGRGKSVA VASSGS    EEMKGE+KRRIPFIDFLGMGSS
Sbjct: 183 ENGRGKSVAVVASSGS----EEMKGEQKRRIPFIDFLGMGSS 220

[Close]

BLAST of CmoCh02G006370 vs. NCBI nr
Match: KAG7035282.1 (Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 210/223 (94.17%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 1   MIGSRSSSSSS---GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSRSSSSSS   GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 1   MIGSRSSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120

Query: 121 AVKNHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPM 180
           AVKNHYHVIMARRRRERFTIFTN+NNIL SRHCLL FSNVLQSSHQKMTPKWSPLTAGP 
Sbjct: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180

Query: 181 LENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           LENGRGKSVA VASSGS    EEMKGE+KRRIPFIDFLGMGSS
Sbjct: 181 LENGRGKSVAVVASSGS----EEMKGEQKRRIPFIDFLGMGSS 219

[Close]

BLAST of CmoCh02G006370 vs. NCBI nr
Match: XP_023007242.1 (transcription factor CSA-like [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 209/222 (94.14%), Postives = 212/222 (95.50%), Query Frame = 0


Query: 1   MIGSRSSSSSSGGGGG-GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEH 60
           MI SRSSSSSSGGGGG GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEH
Sbjct: 1   MIRSRSSSSSSGGGGGSGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEH 60

Query: 61  FEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAV 120
           FEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQ+LHGNKWALIARH KGRTDNAV
Sbjct: 61  FEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQQLHGNKWALIARHLKGRTDNAV 120

Query: 121 KNHYHVIMARRRRERFTIFT-NNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPML 180
           KNHYHVIMARRRRERFTIFT NNNNILRSRHCLL FSNVLQSSHQK+TPKWSPLT GP L
Sbjct: 121 KNHYHVIMARRRRERFTIFTNNNNNILRSRHCLLPFSNVLQSSHQKITPKWSPLTVGPTL 180

Query: 181 ENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           ENGRGKS A VASSGS EREEEMKGE+KRRIPFIDFLGMGSS
Sbjct: 181 ENGRGKSAAVVASSGSDEREEEMKGEQKRRIPFIDFLGMGSS 222

[Close]

BLAST of CmoCh02G006370 vs. NCBI nr
Match: KAG6605324.1 (Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.9 bits (1047), Expect = 5.5e-110
Identity = 208/223 (93.27%), Postives = 210/223 (94.17%), Query Frame = 0


Query: 1   MIGSRSSSSSS---GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60
           MIGSRSSSSSS   GGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA
Sbjct: 1   MIGSRSSSSSSGGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIA 60

Query: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120
           EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN
Sbjct: 61  EHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDN 120

Query: 121 AVKNHYHVIMARRRRERFTIFTNNNNILRSRHCLLSFSNVLQSSHQKMTPKWSPLTAGPM 180
           AVKNHYHVIMARRRRERFTIFTN+NNIL SRHCLL FSNVLQSSHQKMTPKWSPLTAGP 
Sbjct: 121 AVKNHYHVIMARRRRERFTIFTNHNNILSSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPT 180

Query: 181 LENGRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGSS 221
           LENGRGKSVA V SS S    EEMKGE+KRRIPFIDFLGMGSS
Sbjct: 181 LENGRGKSVAVVTSSES----EEMKGEQKRRIPFIDFLGMGSS 219

[Close]

BLAST of CmoCh02G006370 vs. TAIR 10
Match: AT4G33450.1 (myb domain protein 69 )

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-47
Identity = 90/143 (62.94%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 27  TCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFT 86
           +C RGHWRP ED+ LRQLVEQ+GP+NWN+IA+H   RSGKSCRLRWYNQLDPNI K PFT
Sbjct: 16  SCQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFT 75

Query: 87  EEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNNNNILR 146
           EEEEERLL   R+ GN+WA IAR F GRTDNAVKNH+HVIMARR+RE F+  T  +   +
Sbjct: 76  EEEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFS-STATSTFNQ 135

Query: 147 SRHCLLSFSNVLQSSHQKMTPKW 170
           + H +LS S+ L   ++     W
Sbjct: 136 TWHTVLSPSSSLTRLNRSHFGLW 157

[Close]

BLAST of CmoCh02G006370 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-47
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 28  CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTE 87
           C RGHWRPAED KLR+LVEQFGP NWN IA+    RSGKSCRLRW+NQLDP IN+NPFTE
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 88  EEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 135
           EEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR RER
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRER 109

[Close]

BLAST of CmoCh02G006370 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 177.9 bits (450), Expect = 8.6e-45
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 0


Query: 26  VTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPF 85
           + C RGHWRPAED KL+ LVEQ+GP NWN IA     RSGKSCRLRW+NQLDP IN+NPF
Sbjct: 2   IMCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPF 61

Query: 86  TEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER-----FTIFTN 145
           TEEEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR R+          T+
Sbjct: 62  TEEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTS 121

Query: 146 NNNILRSRHCLLS 154
           +++++ S   ++S
Sbjct: 122 SSSLMASEQIMMS 134

[Close]

BLAST of CmoCh02G006370 vs. TAIR 10
Match: AT5G17800.1 (myb domain protein 56 )

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-43
Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 21  SGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNI 80
           SG +   C RGHWRP ED KL++LV QFGPQNWN I+ H   RSGKSCRLRW+NQLDP I
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 81  NKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 134
           NK  FTEEEE RLL   R +GNKWALI+R F GRTDNAVKNH+HVIMARR RE
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of CmoCh02G006370 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-42
Identity = 98/236 (41.53%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 19  CGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDP 78
           CG  SS  +  RGHWRPAED KL++LV  +GPQNWN IAE  + RSGKSCRLRW+NQLDP
Sbjct: 97  CGH-SSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 156

Query: 79  NINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIF 138
            IN+  FTEEEEERL+   RL+GNKWA+IAR F GRTDN+VKNH+HVIMAR+ RE+ + +
Sbjct: 157 RINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSY 216

Query: 139 TNNNNILRSRHCL--------------LSFSNVLQSSHQKMT------PKWSPLTAGPML 198
                ++  +  +              L+ +++  S H+++       P +      P++
Sbjct: 217 RRRKTMVSLKPLINPNPHIFNDFDPTRLALTHLASSDHKQLMLPVPCFPGYDHENESPLM 276

Query: 199 EN---------------GRGKSVAAVASSGSGEREEEMKGEKKRRIPFIDFLGMGS 220
            +                   +   +  +G  E  E +  EKK   PF DFLG+G+
Sbjct: 277 VDMFETQMMVGDYIAWTQEATTFDFLNQTGKSEIFERINEEKKP--PFFDFLGLGT 329

The following BLAST results are available for this feature:

BLAST of CmoCh02G006370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R0C4	4.5e-46	77.57	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
Q5NBM8	2.4e-44	69.67	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9FX36	1.2e-43	61.65	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]
Q6R053	3.9e-42	71.68	Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1	[more]
Q9SEZ4	3.3e-41	41.53	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]

BLAST of CmoCh02G006370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7J0	7.5e-121	100.00	transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111451467 PE=4...	[more]
A0A6J1KY48	1.4e-111	94.14	transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111499785 PE=4 S...	[more]
A0A6J1EVU5	8.3e-88	79.11	transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111438332 PE=4...	[more]
A0A6J1I2H4	3.2e-87	78.22	transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111470309 PE=4 S...	[more]
A0A5D3BQW6	2.8e-83	77.88	Transcriptional activator Myb OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CmoCh02G006370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947674.1	1.5e-120	100.00	transcription factor CSA-like [Cucurbita moschata]	[more]
XP_023533866.1	3.4e-112	95.05	transcription factor CSA-like [Cucurbita pepo subsp. pepo]	[more]
KAG7035282.1	2.2e-111	94.17	Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023007242.1	2.9e-111	94.14	transcription factor CSA-like [Cucurbita maxima]	[more]
KAG6605324.1	5.5e-110	93.27	Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh02G006370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33450.1	1.1e-47	62.94	myb domain protein 69	[more]
AT1G17950.1	3.2e-47	77.57	myb domain protein 52	[more]
AT1G73410.1	8.6e-45	61.65	myb domain protein 54	[more]
AT5G17800.1	2.8e-43	71.68	myb domain protein 56	[more]
AT1G69560.1	2.3e-42	41.53	myb domain protein 105	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 29..78 e-value: 6.4E-12 score: 55.6 coord: 81..129 e-value: 1.2E-12 score: 58.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 77..127 score: 8.791995
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 30..76 score: 10.719653
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 33..74 e-value: 1.48945E-11 score: 55.6594
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 84..124 e-value: 2.85206E-9 score: 49.4962
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 33..93 e-value: 6.3E-18 score: 64.8
None	No IPR available	GENE3D	1.10.10.60		coord: 29..81 e-value: 1.3E-22 score: 81.4
None	No IPR available	GENE3D	1.10.10.60		coord: 83..149 e-value: 1.4E-15 score: 59.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45614:SF100	MYB TRANSCRIPTION FACTOR	coord: 21..161
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 21..161
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..19 score: 5.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 30..76 score: 17.424107
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 77..131 score: 23.594931
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 29..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006370.1	CmoCh02G006370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding