CmoCh02G006300 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G006300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	Cmo_Chr02: 3917577 .. 3918193 (-)
RNA-Seq Expression	CmoCh02G006300
Synteny	CmoCh02G006300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCCATAAACAGCCAGAACCCATTTTGGAGAGCTCAATCTGTATTGGTGAAAGAAGATCGAAAGGCAATAATGGAAAGAATCGACAGAAAGTCATCCATTGAGAACGAGCCAAGAACTCTCAAAATGCACCAAATCCAATTTGCAAGAGTAAGAAGAACACTTAAGCATGCTTTCTTTCTTTTTTCTCTACCTTTATAAATCATTCATTCTTCTGATTCAATTTTGCCATGAATTTCAGGAAGCAGCTCTGTATGTGATAAACACAAGCAGCATAGAAGAAGCAATGAGGATTTTCACAGAGGTAATTAATTAATTGATCAAGTATAAAAGAGAATGCTTTAAGATGTAAGTTTAACGATGTGGGAAATGCATGCAGGGATTAGAAGCAGTGGAGTGTAAACCGATTGAAGATAGAGATTCAAGCATGCAAAATTGCTGCCATGAAGAGGAAGTTGATGAGTTACCATCTTTTTATCGGCTTCCAGACATTGTTTCGGCCCCTTTTTAGGTCACTTTTTTATAAAAAAAATCATAGTTTTTGTAAATAAACATATGATATGTATACTTTTAAGGTCTCAAGGATGGAGTTTTGAGTTTCAACCATCCTCATCCAC

mRNA sequence

CTTGCCATAAACAGCCAGAACCCATTTTGGAGAGCTCAATCTGTATTGGTGAAAGAAGATCGAAAGGCAATAATGGAAAGAATCGACAGAAAGTCATCCATTGAGAACGAGCCAAGAACTCTCAAAATGCACCAAATCCAATTTGCAAGAGAAGCAGCTCTGTATGTGATAAACACAAGCAGCATAGAAGAAGCAATGAGGATTTTCACAGAGGGATTAGAAGCAGTGGAGTGTAAACCGATTGAAGATAGAGATTCAAGCATGCAAAATTGCTGCCATGAAGAGGAAGTTGATGAGTTACCATCTTTTTATCGGCTTCCAGACATTGTTTCGGCCCCTTTTTAGGTCACTTTTTTATAAAAAAAATCATAGTTTTTGTAAATAAACATATGATATGTATACTTTTAAGGTCTCAAGGATGGAGTTTTGAGTTTCAACCATCCTCATCCAC

Coding sequence (CDS)

ATGGAAAGAATCGACAGAAAGTCATCCATTGAGAACGAGCCAAGAACTCTCAAAATGCACCAAATCCAATTTGCAAGAGAAGCAGCTCTGTATGTGATAAACACAAGCAGCATAGAAGAAGCAATGAGGATTTTCACAGAGGGATTAGAAGCAGTGGAGTGTAAACCGATTGAAGATAGAGATTCAAGCATGCAAAATTGCTGCCATGAAGAGGAAGTTGATGAGTTACCATCTTTTTATCGGCTTCCAGACATTGTTTCGGCCCCTTTTTAG

Protein sequence

MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDRDSSMQNCCHEEEVDELPSFYRLPDIVSAPF

Homology

[Close]

BLAST of CmoCh02G006300 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.7e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
          MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 91
          DSSMQNCCHEEEVDELPSFYRLPDIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of CmoCh02G006300 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI-ED 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 RDSSMQNCCHEEEVDE-LPSFYRLPDIVSAPF 91
          +DS ++N  H+EE+DE L  FY+L DIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of CmoCh02G006300 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI--E 60
          M  IDRKSSIENEPRTLKM+QIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I  E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DRDSSMQNCCHEEEVDELPSFYRLPDIVSAPF 91
          D+DS M+N  H+EE+DEL  F +L DIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of CmoCh02G006300 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.1e-25
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
          M RIDRKSSIENEPRTLKMHQIQFAREAALY++NT++I+EAMRIFTEGLE VECK   DR
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 --DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 91
            +   +   +EEE+ +L   YR  DIVSAPF
Sbjct: 66 NINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

[Close]

BLAST of CmoCh02G006300 vs. ExPASy TrEMBL
Match: A0A498HZX3 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029888 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.6e-15
Identity = 53/92 (57.61%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 3  RIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDRDS 62
          RIDRK SIE EPRTL M QI+FAREAA YV+NT ++EEAMRIFTEGLE V     +  D 
Sbjct: 7  RIDRKPSIETEPRTLGMEQIEFAREAAKYVVNTKNMEEAMRIFTEGLEPVVSSIQQSGDE 66

Query: 63 SMQNCCHEEEVDELPSFYRLP----DIVSAPF 91
           M     E E  E   +YR P    +IVSAPF
Sbjct: 67 VMMASVEEPEYSE--PYYRRPRGPREIVSAPF 96

[Close]

BLAST of CmoCh02G006300 vs. NCBI nr
Match: XP_022947894.1 (uncharacterized protein LOC111451648 [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
          MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 91
          DSSMQNCCHEEEVDELPSFYRLPDIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of CmoCh02G006300 vs. NCBI nr
Match: KAG6605318.1 (hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035274.1 hypothetical protein SDJN02_02069 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 8.4e-41
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
          MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECK IEDR
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKAIEDR 60

Query: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 91
          DSSMQNCCHEEEVDELPS YRLPDIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSLYRLPDIVSAPF 90

[Close]

BLAST of CmoCh02G006300 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
          M  IDRKSSIENEPRTL+MHQIQFAREAALYVINT++IEEAM+IFTEGL+ VECK I+D+
Sbjct: 1  MGNIDRKSSIENEPRTLRMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60

Query: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 91
          DS M N  HEEE DEL S Y+  DIVSAPF
Sbjct: 61 DSIMGNYYHEEEDDELQSLYQPRDIVSAPF 90

[Close]

BLAST of CmoCh02G006300 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.1e-27
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
          M R+DRKSSIE EPRTLKM+QIQFAREAALYV+NT+S+EEA++IFTEGLEAVECK I D 
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 61 DSS-MQNCCHEEEVDELPSFYRLPDIVSAPF 91
          D S M+N  HE+E DELP  Y+L DIV+APF
Sbjct: 61 DESIMENWFHEQEADELPPLYQLRDIVTAPF 91

[Close]

BLAST of CmoCh02G006300 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 6.9e-27
Identity = 69/92 (75.00%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPI-ED 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK I ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 RDSSMQNCCHEEEVDE-LPSFYRLPDIVSAPF 91
          +DS ++N  H+EE+DE L  FY+L DIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of CmoCh02G006300 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 1   MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60
           M+ ++R+SSIE EP TL + Q++ ARE ALYV+ T ++EEAM IFT+       +  E+R
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  DSSMQNCCHEEEVDELPS---FYRLP---DIVSAPF 91
                N   EE+ D+       +  P   DI +APF
Sbjct: 67  GGRCINLKDEEDDDDYEDERMMFMSPHAWDIHTAPF 102

[Close]

BLAST of CmoCh02G006300 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 1   MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFT----EGLEAVECKP 60
           M+ ++R+SSIE EP TL + Q++ ARE ALYV+ T ++EEAM IFT    EGL A     
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRA----- 66

Query: 61  IEDRDSSMQNCCHEEEVDELPS---FYRLP---DIVSAPF 91
            E+R     N   EE+ D+       +  P   DI +APF
Sbjct: 67  SEERGGRCINLKDEEDDDDYEDERMMFMSPHAWDIHTAPF 101

The following BLAST results are available for this feature:

BLAST of CmoCh02G006300 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G006300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G887	9.7e-43	100.00	uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
A0A0A0LQ89	3.4e-27	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1	[more]
A0A1S3CDH2	4.4e-27	73.91	uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=...	[more]
A0A6J1DBC1	9.1e-25	68.48	uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A498HZX3	8.6e-15	57.61	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029888 PE=4 SV=1	[more]

BLAST of CmoCh02G006300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947894.1	2.0e-42	100.00	uncharacterized protein LOC111451648 [Cucurbita moschata]	[more]
KAG6605318.1	8.4e-41	97.78	hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038902606.1	2.8e-28	76.67	uncharacterized protein LOC120089256 [Benincasa hispida]	[more]
XP_023512402.1	4.1e-27	73.63	uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 ...	[more]
XP_011649401.1	6.9e-27	75.00	uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ...	[more]

BLAST of CmoCh02G006300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33467.1	1.8e-09	39.58	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]
AT4G33467.2	2.4e-09	42.00	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	EXPRESSED PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR34808:SF2	EXPRESSED PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006300.1	CmoCh02G006300.1	mRNA