CmoCh02G006020 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G006020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
LocationCmo_Chr02: 3723841 .. 3727262 (+)
RNA-Seq ExpressionCmoCh02G006020
SyntenyCmoCh02G006020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACGGAACGTAGGTCCATACAGCTTTCGGTGTGTTTTTCAGTTCATTACTCTCTCAGTTTTCATTTTAGATTACCGCTCTCTCGCTCTCTCTCTCTCTCTCTCGGTTGTTTTCTTCAATCATTCAAACAAATTCCCCAAGGTTTTGAGATCAATCTCATGGAGGATCGCAAGGAGGTAATTCTTGAACTCATGCTTATGATTTCACTCATTTTTGGTTTCTCTGTTGCGCGAAAAGATTGTGGAAGTGAACGACGATGATGTTGATCTCTTCTCCTTCATTTTGAGTGTGCAGATTAAGAAAATCTTAGAGGATTTGATGAATTCAGTTTATGAGTAGAAGGATTTTGTTGTCACTTAATTGCACAGTTCACTCCGCTCTTACTTATTTAGAACACATTGGAGATTCTTTATTATACTCATTTTGATGCACTTTCTTGGAAAGGAAACAGAGCATATTCCTTGATTTTGTACCATACGAAAACATCGGCTTCCATAGAATGATTGAGCTCTTGGTAAAGTTTATTGTGTTTTCTGTTTTTAATTCAAATTTCTAAGATTCGATATTGAATATTATTACCTTTTCCCCAAATACATTATTGAAGCTCTGCAGTTTCTGCTGCTTCAGATTTCTCTACTTCAAATTTCAATTACTTTCTCCTCCAGCGAAATTTGTGTGCTTTCGTGCTCAGAATCTTTCCTCTCTGAACTTTCCCCTTCCGTTTCTTCATGATTTGTTTGATTCATTTCTGATGTTACTCCGCTCTCACACATCAAAATCGACGAATTCTGGAGTCCATCTAAGACTTGAATAATTAGTTATTGAAAGCAATTTCAGTATGTTTAATGGATAGGAAGGAGTCTCTGGATACAAAAATGAAATAAAAGCTTGTTTGCCTGAGCTTTCGATCCTAAGAACTGCTCGATTTTGGCGCAGATAAGAGAGAAAGTAGGGCAAGTCGAAGCAATAGTCCGTCCAATCACATGAAATCAAACTGATAACAAACTAGTGGGTTACATTATTGATAGTGGGCCTGTACCGAAACGCGTAAACATATCACTAACTAGTTACCTCCATACTTCACTATTGTGTCAGAATTTAACCTTAAAACTCCAGTCTTATTAAATTGAGCTATGAAATTGAATATCCCCTTAATGTAAAATTTTCTACAAGTTGAAGAACACCATTTATAAGTAGATTTATGGCATGTTGGAAATCGCTTTATTGAGGTTAGATTTGGCATTGTTTTGGCTGTTTGGTTCTGGATTGTCTTGTAGCAAAGTGCAATAGTTTTGATATTATGAATTTGATATTGGATGGGTTTTGTTTGGTACGATTTTGAGTGGTTTAAATTTGGATGCAGAAAGTGGCTCCATGGCTGAGTGTTCCACAATTTGGAGATTGGGAGCAAAAGAGAGAGGTGCCTGATTATTCGGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAGCACAAAAGGGATTTGTCAAGGGCAAGCATTGGCAATGAAGAGCAACTGATGGCCTCATCAGCCACCACCACCACCACCACCACCACCACCACAGACGCATCTCATTTTCATGCTCATGAGAATCACCAATTGAATCATTCAAACACCAACTCCCCAACGGTAAGATTCCTTCGCTCATTACTTGCTTTTTTTCCCCTTCTTTTGCAGCTTTCTACTTTAAGCATCTCCTTTTTCCTCGTGATAGCGCATACTCCGCCCCCTCAATAATTTATTCAATATGCTACTGTTGGAAAAAATAAAGCTCAATCCCTAATGTCACTTGATCTAAAAAGCCTTTTTTTCTTTTTTCTTTTTTTTAATAAAGATTACCACCCTTCCCAAGGCTTAGTAGCTGTTAAATTCCCATTAAATGAATTTAAAAAATAATTTCTTTTAAAAGTCAACTGAGATGGAAAATAGAACCTACCTTTTGATTAAGTAGTTGTGCTATAATTAAGTTAGTTTAATTATGCTTAATTGTTGTAGATTAACTGTGGGTGTGGGATTATTAGTTGTTTAATTGTGTGTAGTTTAATTATGTTTAATTGTGGGTTTTTAACTGTGTCTTAATAAGTTTAATTATGTGTGCTATACCGCTTTTATTATTGGCATGAAGAAAAGTAAGAAAGTAAGAATCTCTCAAAATCTACCAATTTTAACAAATTAGTGTACAACCATTGAATGAATATTCTCATACATACCAATACTAATAAAAACCCAACGGTGATATTGTCTTGTTATGAAGCCTCTATTGATCTAGTTTTTTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAGGAAGAATGCAGAAAATCCTCCGAGCTAGTATTATTGCCTTTTATGAAGTTGGCTTCCTCTTTTTCCTCTACATTTGTTGACACTCCACATATAAATGCATGTGAGAGTGTAAGTTAAAACAAAACAATTTGTTAATCAACTAATAATAAAACAGATTAAAATAATTTCATTAGAAAATTTAATAGAAATCTTCTTTTAATAATCATAATTAATCACACAATTAATTTAAACAGTTGGTAACATCTTATTCAAACAATGTTAAATCATGAAGTCTCGAACCTCCTCCATCTTGGCAAAACCCCCTAGTTGGTTGGTACAGTATGATGTAGTACTCATGATAGGTTGACATAAGTTAGGAAATGTTCGACTAACGAGTGAAGAAGAAGTTGAGCCCCATAGTGTTCATGTTAGGAATCTTGAACCACGAAGGTAGGATATTGTCTACTTTAAGCATAAGTCCTCATCACTTTGCTTTGAGCTTCTTTAAGAGGCCTAGTATCAATAGAGATGTATTCCTTACTTATTAATCAATGACCATTTCCTAAATTAGTCAACGTGGGACTCCCCTCCCAACAATCCTCAACATTGTCGAGTGATTTTGCATCCTTTTCTAACTGCAACTTTGTATTTCTACCTTTACATTTATTATACAACTTGTGGATACTAATAGTTGAATACATAGAATGCATGTGATTTGGTTTGCAGACAACATATGGTTGAACTGTTTGTGTGAAAGCATGTCCACAAACTTGTTTATGTCTTACAACTTTTGTTTTATGGTTTTTCGTATCAGACAAGGAAGAGCATACTAAGCTACTTCAACTGTTGTGTGAAAGCATGATCACAACCTCAAAGTTCACCAATCTTGACTAATGCTGTGTTGGTTTCTCTCAGGTTTTTTTGTTTTCACATTTGGTTTGTGAGTTACTATATGAACAAGGAACTCCTTTAATTGAAGCTAGATAGATATATAATTCTTCTTTATTTCTTGCTCCTAACCTACTTTTCACTGGAAAAAATAGGAGAAAAAAAAAGAAGAAAATGTTGAACTTTTTCTTGTGGGTATGTAATATGC

mRNA sequence

GTACGGAACGTAGGTCCATACAGCTTTCGGTGTGTTTTTCAGTTCATTACTCTCTCAGTTTTCATTTTAGATTACCGCTCTCTCGCTCTCTCTCTCTCTCTCTCGGTTGTTTTCTTCAATCATTCAAACAAATTCCCCAAGGTTTTGAGATCAATCTCATGGAGGATCGCAAGGAGAAAGTGGCTCCATGGCTGAGTGTTCCACAATTTGGAGATTGGGAGCAAAAGAGAGAGGTGCCTGATTATTCGGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAGCACAAAAGGGATTTGTCAAGGGCAAGCATTGGCAATGAAGAGCAACTGATGGCCTCATCAGCCACCACCACCACCACCACCACCACCACCACAGACGCATCTCATTTTCATGCTCATGAGAATCACCAATTGAATCATTCAAACACCAACTCCCCAACGACAAGGAAGAGCATACTAAGCTACTTCAACTGTTGTGTGAAAGCATGATCACAACCTCAAAGTTCACCAATCTTGACTAATGCTGTGTTGGTTTCTCTCAGGTTTTTTTGTTTTCACATTTGGTTTGTGAGTTACTATATGAACAAGGAACTCCTTTAATTGAAGCTAGATAGATATATAATTCTTCTTTATTTCTTGCTCCTAACCTACTTTTCACTGGAAAAAATAGGAGAAAAAAAAAGAAGAAAATGTTGAACTTTTTCTTGTGGGTATGTAATATGC

Coding sequence (CDS)

ATGGAGGATCGCAAGGAGAAAGTGGCTCCATGGCTGAGTGTTCCACAATTTGGAGATTGGGAGCAAAAGAGAGAGGTGCCTGATTATTCGGTTGATTTCTCAAAAATAAGGGAAAATAGGAAACAGCACAAAAGGGATTTGTCAAGGGCAAGCATTGGCAATGAAGAGCAACTGATGGCCTCATCAGCCACCACCACCACCACCACCACCACCACCACAGACGCATCTCATTTTCATGCTCATGAGAATCACCAATTGAATCATTCAAACACCAACTCCCCAACGACAAGGAAGAGCATACTAAGCTACTTCAACTGTTGTGTGAAAGCATGA

Protein sequence

MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMASSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA
Homology
[Close]
BLAST of CmoCh02G006020 vs. ExPASy TrEMBL
Match: A0A6J1G5D0 (uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC111451041 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA
Sbjct: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 110

[Close]
BLAST of CmoCh02G006020 vs. ExPASy TrEMBL
Match: A0A6J1L3A7 (uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSA T+TTTTTTT+ SHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA
Sbjct: 61  SSA-TSTTTTTTTNTSHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 109

[Close]
BLAST of CmoCh02G006020 vs. ExPASy TrEMBL
Match: A0A0A0LJN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.2e-40
Identity = 90/110 (81.82%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPW+SVPQFGDWEQK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEE+LMA
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSAT TT T       H H  ENHQLN +N+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATPTTNT------PHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of CmoCh02G006020 vs. ExPASy TrEMBL
Match: A0A1S3C6Q7 (uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 87/110 (79.09%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           ME+RKEKVAPW+SVPQFGDWEQK EVPDYSVDFSKIRENRKQHKRDLSRASIGNEE+LMA
Sbjct: 1   MEERKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SS T TT T       H    EN QLN +N+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSVTPTTNT------PHSIVDENRQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of CmoCh02G006020 vs. ExPASy TrEMBL
Match: A0A6J1DU25 (uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024373 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 81/110 (73.64%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPWLSVPQFGDWEQK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEE+L+ 
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELIM 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           +S+TT +T  T+ +A+H           S   SPTTRKSILSYFNCCVKA
Sbjct: 61  ASSTTPSTNNTSDNANH---------QFSPQPSPTTRKSILSYFNCCVKA 101

[Close]
BLAST of CmoCh02G006020 vs. NCBI nr
Match: XP_022947047.1 (uncharacterized protein LOC111451041 [Cucurbita moschata] >KAG6605291.1 hypothetical protein SDJN03_02608, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035251.1 hypothetical protein SDJN02_02046 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.4e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA
Sbjct: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 110

[Close]
BLAST of CmoCh02G006020 vs. NCBI nr
Match: XP_023533301.1 (uncharacterized protein LOC111795235 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 4.9e-51
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSA T+TTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA
Sbjct: 61  SSA-TSTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 109

[Close]
BLAST of CmoCh02G006020 vs. NCBI nr
Match: XP_023006844.1 (uncharacterized protein LOC111499515 [Cucurbita maxima])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA
Sbjct: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSA T+TTTTTTT+ SHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA
Sbjct: 61  SSA-TSTTTTTTTNTSHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 109

[Close]
BLAST of CmoCh02G006020 vs. NCBI nr
Match: XP_038900911.1 (uncharacterized protein LOC120087959 [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 6.0e-41
Identity = 92/110 (83.64%), Postives = 96/110 (87.27%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPW+SVPQFGDWEQK EVPDYSVDFSKIRENRKQHKRDLSRASIGNEE+LM 
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGEVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMV 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSAT TT T       H HA ENHQLN +N+NSPTTRKSILSYFNCCVKA
Sbjct: 61  SSATPTTNT------PHSHADENHQLNPTNSNSPTTRKSILSYFNCCVKA 104

[Close]
BLAST of CmoCh02G006020 vs. NCBI nr
Match: XP_004148448.1 (uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical protein Csa_006726 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 90/110 (81.82%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MEDRKEKVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 60
           MEDRKEKVAPW+SVPQFGDWEQK  VPDYSVDFSKIRENRKQHKRDLSRASIGNEE+LMA
Sbjct: 1   MEDRKEKVAPWMSVPQFGDWEQKGGVPDYSVDFSKIRENRKQHKRDLSRASIGNEEELMA 60

Query: 61  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
           SSAT TT T       H H  ENHQLN +N+NSPTTRKSIL YFNCCVKA
Sbjct: 61  SSATPTTNT------PHSHVDENHQLNPTNSNSPTTRKSILRYFNCCVKA 104

[Close]
BLAST of CmoCh02G006020 vs. TAIR 10
Match: AT5G09960.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-25
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 0 

Query: 2   EDRKEKVAPWLSVPQFGDWEQK--REVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLM 61
           +DRKEK  PWLSVPQFGDW+QK    +PDYS+DF+KIRE RKQ+KRD SRAS+GNEE+L+
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 62  ASSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
               + T+T   TT  S  +  E    +H   +SP+TR+S+ S FNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSE-NQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

[Close]
BLAST of CmoCh02G006020 vs. TAIR 10
Match: AT5G64850.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 59/114 (51.75%), Postives = 74/114 (64.91%), Query Frame = 0 

Query: 1   MEDRKE-KVAPWLSVPQFGDWEQKREVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLM 60
           MEDRKE K +PWLSVPQFGDW+QK    DYS+DFSKIRE RK +KRD SRAS+GNEE+L+
Sbjct: 1   MEDRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELI 60

Query: 61  ---ASSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVKA 111
                     T         H   +  ++ +H + +SP+ R+ I S FNCCVKA
Sbjct: 61  NPFHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

[Close]
BLAST of CmoCh02G006020 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 67.4 bits (163), Expect = 8.2e-12
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 3   DRKEKVAPWLSVPQFGDWEQK--REVPDYSVDFSKIRENRKQHKRDLSRASIGNEEQLMA 62
           D++ + A W  VPQFG W+QK   +  +YSV FSK R NRKQ+K  +  +S+G+E++LM 
Sbjct: 2   DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMV 61

Query: 63  SSATTTTTTTTTTDASHFHAHENHQLNHSNTNSPTTRKSILSYFNCCVK 110
           S              +H   H  H+    + +    +K IL+Y NCC++
Sbjct: 62  S-----------VRRNHQQLHHRHET--QDDDPVMKKKRILTYINCCIR 97

The following BLAST results are available for this feature:
BLAST of CmoCh02G006020 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G006020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G5D01.1e-53100.00uncharacterized protein LOC111451041 OS=Cucurbita moschata OX=3662 GN=LOC1114510... [more]
A0A6J1L3A72.6e-5096.36uncharacterized protein LOC111499515 OS=Cucurbita maxima OX=3661 GN=LOC111499515... [more]
A0A0A0LJN97.2e-4081.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297140 PE=4 SV=1[more]
A0A1S3C6Q71.5e-3779.09uncharacterized protein LOC103497474 OS=Cucumis melo OX=3656 GN=LOC103497474 PE=... [more]
A0A6J1DU255.0e-3373.64uncharacterized protein LOC111024373 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of CmoCh02G006020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947047.12.4e-53100.00uncharacterized protein LOC111451041 [Cucurbita moschata] >KAG6605291.1 hypothet... [more]
XP_023533301.14.9e-5198.18uncharacterized protein LOC111795235 [Cucurbita pepo subsp. pepo][more]
XP_023006844.15.5e-5096.36uncharacterized protein LOC111499515 [Cucurbita maxima][more]
XP_038900911.16.0e-4183.64uncharacterized protein LOC120087959 [Benincasa hispida][more]
XP_004148448.11.5e-3981.82uncharacterized protein LOC101211284 [Cucumis sativus] >KGN62090.1 hypothetical ... [more]
BLAST of CmoCh02G006020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G09960.15.0e-2556.76FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G64850.11.1e-2151.75FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G19473.18.2e-1235.78RPM1-interacting protein 4 (RIN4) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..94
NoneNo IPR availablePANTHERPTHR33882:SF2PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEINcoord: 1..109
NoneNo IPR availablePANTHERPTHR33882PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEINcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G006020.1CmoCh02G006020.1mRNA