CmoCh02G005840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G005840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein Musashi homolog 2-like isoform X1
LocationCmo_Chr02: 3456307 .. 3464540 (-)
RNA-Seq ExpressionCmoCh02G005840
SyntenyCmoCh02G005840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAAGATAAAAATAAATAATAAAAGGAAACAGGAGAGGAGGGAGAGAGATGAGATCTGCTCTAGGTGTTCCTTGAATTCCCAGAAAATCTGATTAAAGGTCAGTTGAGCGCGTTATCCACGAATCTATACTTTTTTGTTTGTTTCAATTGTTATTTTGAAGCTTTAATCGCAAACAAGAAATTGAAACAAGGAACAAACGAGTGATGGAATCCGTGAGATTGATTTGGTATTTAACTATTGTGTGTGAGAAAGAGGTGTGCTTCTTCTTCTTATTGTGTGCAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGTGGGTCTTAGAGCGAGCGAGCGAGGAAGAACAGGAGGAGAGTGAGATATTCTTTTTTCACTTTTAGGGTTCAATTTCATTGCGTTAACTGCCCCAATTCATCATGGATCGGAAGCTTGTGGTTAGTTTTTTCTTCTATCAAGTAATTTGGTTAAGGGTTCGATTCGTTTTATTTATTTATTTCGTGAAATTTAGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGTTTGCCATTTCCCCTATTCGTATGATGCGTTCGTACTGTCATTCTTTCTTATGGGTTTTTAAGAAAGCATGCCTTTGTCATGAATTCAGTGATTTTAAAAGTGTGAGGTGCACTGGAGCGTAATGACTTTAAAAGAAAAAAGATTTGTAAACACTTTATATAATACATGAACATGAAGATTGTTATGAATAAGAACTAATGAAAATTTTAAGAATTAAAAGCTTTTATTAGAGATTGTGGAGGAAAAATGAAGGTGTTAGGAATGCTTTTATTTTCTTCCTAAAACATTATTAGAAATTAGGGCTTCAAGCATTGAGGTGCCACCTCAGCTATCGATGCCCGTGCCTCAAGCTGGCCTTATCTAGGGTGCCTAGCTGTTTTGAAGCAATACACCAAGTGTGGGCTTTTCTGTGTGCCATGGCATGCTTGATCTATTGGCGTTCAGGTTGTAGGAATGTATGTGCTGTTTATGTTTGGATGTGCAGAAATATGAGTTTCATATGCTAGGAAGTGAAACATGTTTAGTTTGCAGGAATGTTATTTAGAAAAGTTAATTTGAAATTTTTTTAATTATTATTTAAATTTCAAGAACATAATTTTAAATTAAGTTAAACATCTTCATTCTAAAAGTTAAAAATCCATTTCTTGCCATCTCTTGTTCAGACCCAAGCAAAAACCAAAAATATTTTACAATCTTCATTAGGTACTCCAAGTAAAAAGACAACTTCAGAAAGTCTTATTCAAATCTTTTGATGTTTGCACACAAAAACACACTGTAGATGGCCTAATGTGTCGCTTTTGGTACTCCAAGTAAAAAGACAACCCCAGAAAGTATGATCCAAATCTTTTGATGCTTGGACACAAAAACACACAGTAGATGGCCTAATGTGTCTCTTTAGGTCGTTTATAAGAAATTTTGTACTTTTTGGTAGGCCTTGTTGTCTTGGATTGAAGCCCTGTTTTGTATAGCTTGTTTGGATTTGGATTGCTTCTCTTGTTGGGCTATGGTTTTAGATGCCCCTCCTACATTCTTGTTTGTTTTGTCAACGAAAGTTGGTTTTCAATTATTTTTTCTAATATATTTTTATCAGCTTTGTTTTCCCTGGTGGATTGTACATATGAAGACAGTGGATGCTTGTTGTGGCTAATTTTGTGTAGATACATTTTTATTTTCGAGTCCTTTTTTGGTAGTCATATGCTTTTTTTTTTCCTTATATGTCAGGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGGTAGGACTATCTTCAATATCTTCACGTTTCGTTGACTTGATGCCTGATGCCGGATGCCTGATGCCTTACACCTCTTTGTTGCAGAATGTGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGGTTAGTTTCTCTTTTTCTCTCTTTCCCTTTTTAATTTGCCTTCCTTACATACATTTTCCTTGTCTAGAATCCCCTTCATTTTTATCTTCTTTTTGAATAAATAAATCATTTAAAGTGCGAGTACTATGTTTTGATTTGTATGCATACATATTTGTATCATATGTTTTGAACTGAAAAGCATATCCTGGAAATGATCATATTTTCAGGAAATATTTGTATCATATTCGTATCATATTTTCTGTTGACAGGAAGAGATGAGAGCACCTCCAAAGAGAGTTACGAGGATATTTGTAGCAAGGATTTCACAATCTGTGACTGAGGCTGCCTTCCGCAGGTAGTTTGGTGTGATTTTGTGCACAATCAATATATATCAGACATTAGTTGAACACGATGGCTACACGTTGGACACTTGTTAGGCACATGTTAAATCCTTGTTAAGCATAATAAATAGGTCTTATTTCACTTGATGATGGCCGTTCCTTTTGTGGATTCGGTTTTCTTATATGCCTTTTTATTCTTTCATTTTCTCTCAATGAAAGCTTGATTCTTTATTAAAACAAACGTTCTTAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAATAGTAATATAGGACAAAACAATTTACTGAGTTAATACATCAAAATCTTTTTTCCAAGCATACACATAGGCTTACTGACTTCAGATTTGCTGATGGTATACAATATTTATTTAAAAAAGTGTATATTTTAATTAGTGTATTCTAGTCACGTTTGTGTCCTGAACTTTTTAGAAAATTCCGTCTTACTGTGTCCATGTTGTGTTTTGTGCGTCTCTCCTGTCCATGCTAGAAATTTGATTGGGATTTATCGGTGAAGGCTGAAGAGGAATTGGGAAGAGAACAGGCAACAAAGCTGGAAGTAGAAAAAAAGATTGAATCTGGCCTAAAGAATTCAGGCTATAGATCATTTAAGGAAGTCTGTGGAGAACTGAGAAAGTACAAACCTCTTAATGGAACTTTGTCGCCAGAAACTTTTTGAGCTTGAATCTGACGTGGAATTATCAGTGAATAGGAGGTAGAGACTAATTTAGAAGAGGACGGGAAAAAAGATGAAAGAAGAAAAATATTGAATCGCACCAAGAGTATGCAGGTTATAGAACGTCGAAGGAAGTTGTGGAGGCATGAGAGAAATTGAGAACTTCTCAATGAAACTTCGTAGCAACTTGAGAGATAAAGAACTTTGAGGTGGCAGTTGAATGACTATTTGTTAATTTTCTATTCACATCATTATATGTGGGAATGACAGAATGATAATCCTCCGATAAAGTCTAAGGAATGTATGCGTGAGGAAAGAGTGAGGATTGATTTTGTAATTAGTTAGTTAAAGGGGGATGCATCGATGTGTTACGAATTTGTGGGGCTGACATAATAGGAAAGATGGAGTACTCAAGGGAAAGAAGGGAGTTAGGAGAGGTACGCTTGCTTATGTAACTTATTGATAAATAAATCTAGCTCCCATGCTTGTATAGCTTATCAAATATCGAGCAAGAAGTTACACTTCATGGCTTATGTCTTCCTGTCCTCTGACCCTTCCTTGCTGTCCTTGAGTTTTTTCCGCAATTTCTCAAAAAGAGAGGCTTTGGATGTTGTGCGCCGTCTTTCGATTCCTTAGGGGCGGGTGATATGTTCTTCGCGGGGGGAGGGACGCTAGGTTCTAGACCCTGGATCCATGTAGGGGCTTCTCTTGTAGCGCTTTCTATTGGTTCAGCCTGGCCTGTTCTCCCTCTTTCTGTGTTTGCTTTCTCCCTGGTCTGGAAAGTGCAAATCCCTAAGAGGATAATATATTTGTGTAGCAGGTTTTACATGAGAGAATCAACAATTTGGACCTGTCTAGAGGCATTCTTCTCGTGTTGTTTCTATGGTGGTGCATTCTATGTAGGTGTCAGACCGAGTATTTGTATCATCTGTTGTGGGTTGCTCGTTTGTCCGAATTTTTTGGGCCCGTTAGATTCTTATAATTTATGTTGGGTTTGACAGAGGAGGTTCTCCTGGGCTTACTTTTTCGTGAGAAGGACACTGTTTTTTGGCATGCCAGTTTCTTTTGCCATACCATGGGGGGTTTGGCTGGAGAGGAATTGTAGAATTTTTAGAGAGGTGTGGGTGTCGGTCACTTGGCCTTTTTGTAATTATGATCTTGGTTTGATTTTGTTGGATTGAAGTCCCTTTGCATAGTTTATGAGACGTTCTTTTGTGGGTCTTATTTTATCTATACCCATATATTTTCTTTTATTTTCTCAAAGAAAGTGCGGTTTCTTCTACAAAAAATAAATAAATCCATCTCATATCACAAAATTTTGTGTGGCCTTTCTGTTTCAAATGGCGATGTTGCAGGGACAAACATTTTAAAATTTAATTCGGGGATGAACCGTGCTTGCATCTGCCCCTCAAGTGTGTCTCAAATTATTACAATTATTCTATTGACCTTTAATTAACCTTTTCTATTGACAGACGAATAGGAAGTTTCATATTTTCATTAAATGAATTATTTAAACTAATAAATAATAAAATTAATTTTATTGCCTAGAAAAAGTAGGTACCTGCAAGGAAACCTGTTCCTTCAGGGTTTTTAGACATCTCTTAAGAGTCAGAGTCTGTTGACTCAATCCACAAGGACTTTGGTAAAGCTTTCAAGCTATATACCCAAATGTAACTTTGTAAGAATTTCATTATCTGATGGTTATCGGAGAGAAGATTGTTAGTATCCTTCGGATGGCACTAAGGCCTTTTAAGAATCCACTAAAACACTATTCAAGCATCTCGTAGAAGAGTTGCAACATTTGTCTTAAGAAGTTGATTCATGTTTTTTATTTATGAGTTGATGACCTTTTTTTGTTATTTGGTTTACAAATTCTTGATGGAAATGAACTTCATGTTTGTTGCAGTCATTTTGAGAAATATGGAGAAATAACAGATCTATACATGCCGAAGGTACGTTTTCCTTTCACTAAACTAGGAAATTAGTTCTGTGGATTCTCTATTCCTATTTTCACTTATCAGGTGTACATGTACTTCGTGAATTGGAAAATATGGGTCACCCATGTTTTTGTGCAGTGTATATTAACATCTTTTAACATTTGTTAATTATTCAGGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAGTTCAGGTTGGATCATCTTTTTATATTGATATAAGATATGATTGCAGAGTTCAAGTTGGCAACTTTTGGTTTGTTTCTTCAATTTCTGAAAATATTCCGTCCGAATACGGATCCTTTTAATTGTTTACTAGTGCAGTAGTTGAGTTTTTCTACACTGTTCAAAGATTTCCGGATACATAAGTACAAAGATTGGTTTATGGGAAAACATTCTCTCTGCTACCACTCTCAAACAACTCACTCTCCTTCATTTTTCAATTTCATCTCCTTTTTCACTCTTCTTTCCACTGATTTTTTCTATAACTATTCACTTCTTGTTTTTTCCTTTCATTTTTTTTCTTGAAACTCTTTCTTTTTTTCTCCAACTTCAATTGATTAGAAAATACATCTTCAGAATTCAAAGGTACAAAATGATTTTTTTACCATCTTTCCACAATCTAGCTTGAATAAGGCCTAACTCTTCAAAGAGCAAGCCAGTTTAAGTGAATATAATTCTACTCAGAGCAAGCCACTTCTAAATTTAGTCATCCCATAATTGAACTCTTCAAAGAGCAAGCCTGTTTAAGTGAACTTAACCTAAACTCCATGGTAACTTAAATCTTTTACACATTGACCTTGCACATGAAATTGAGTTTGAATCAAGACTATTCAATTTTGAAGGTAAAGAATGAATGTTTCTTGTTTTGGATCAAAACTTGTAGAACACCATGGTCACTATCATTTTCTCAGTATCATGGTGAATCATGGTCGGAGGGGGTGGGAAGGGACAAGCAGTGGGGGAAGAGGAGAGGGACATTTAAAACTGTTCATGGTTCTTTTTCTTTCCTCTCGCCGACTAAAGTGTGCTGTCCTTAAGAAAGTTCCAGAGAGGCTTTTTTATCCTCCTGCAGTGCACCTTGGTTTTCCTTCTAATTTTGTTTTATTGACAATCTGCATTGTAACGTTTTCACATTAATATAAAAGTTCAACCATGCTATTTCGTGGTTGCCGATTTCCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAATTAGGAGGTTCTGCAGTAGTTGTTGACAGAGCGACCCCCAAGGCAAGATTTTGCTGTTATCTTTATAACACCATATTTACCTTTTGATGGATTTTTTTTTTCTTTTTTTTTGAAGACCGAAGGATTCTTTTTAGTTTGTAATGATTTTGTTCGTCTAATTGAGGTCAATACACTATTTTTCCAGGATGATGATTTCAGGCCCATAGGGAAAATGCCGCGAGGAGGGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGTATGTATCTCTGATAGTATCCTTGTTCATGTGATGCTTGGTCTTGGTGAATATTGTTATGATGATTCCCCATGTCATTGGATCAGGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTAGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGTAAAATTAGATTTAGTTAATGCTCCACTTTTTATGAGTGACTGAATTGAGATAGCATAACGGTTCAGTTGTTACTGACGAATGTAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTCGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAGATTTGTGGACAACAGGTATTCTACTGCATGTCACTTTCCTCACTAGAAGGGCATTGCCAGCGACTGTTCTTTTCTGCCTTTTGCGAGTAATGGTTACTAGTTATTAGTTATATGATTATTACGTAAGCTTCAATCTTGGGTTATGAATCTTATCTCACAATTGGAATCTGCAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTGTGATGAATAGCGCGGCAGAATCTTTTGGGAGCTATGGTGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGACTTTGATGATGTAAGTGGCTCTGTTTCTATTTAAATTATATTCAAGTTGGTTAAAATTTAGGTAGTGATTGATAGGTTGTCCACCACATTTAGCGAGCTTTACATTTACTGGTGCCTCTCAGAACCTCCCAAGTGCCCTACAATTAGGATTATAAACATTTTGATTAAAGATTCTTTAGAAATTATTTGAAGGTTTGGTTTCTGAACTTTGAAAGTGTTTTATGATAAGCATTTTTTGGCAAAATACTTTTGAGTGCTTTTGATGAGTCAAAAAGTCAAAAGCATTTAAAAAGGTTACTTCAACATGATTTATTTTTTCTTTTAAGCTTTTTTAAAGATTAATGGGTTTATATTGTGCAGTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCATACTGATGAGAGACAAACCAGCATTGAATTAGTAGTGATGGCTGATGGCTTGATAAATCAACGGCATGAATTGCCATATTTATGGAGAGTCGATATCTTTCAATGTCTGATTATTTGGTTTCTTTTGGCTTATTGTTTTTAACTGTCTCCATACCATTCCTTAGCTGAAACATGGATCAATTGGGGTCGTCGGGGTGTGGGATCGGGATCGGGATCAGGAGGGTATGTCGGCTGTATGAATGTTTGGTTAGTAGTTCTTAGTGAGTTATATTCTTCTCCAACTCTACTTTAAGAATTATCCATTTTATAACATCTCTAGGATGGTTTGGTTATCATTGAACAATAGATTGACTACTGAACGCTGGATGGCCTTTTTTTAGTTATGCGTTCTTTTTCTTTGCATCAGTCCTACAATGTTTTCGGATCCTTCCAATTAGACTAAATCCGTGGCCAAATAAGAGCACTCCCT

mRNA sequence

TTAAAGATAAAAATAAATAATAAAAGGAAACAGGAGAGGAGGGAGAGAGATGAGATCTGCTCTAGGTGTTCCTTGAATTCCCAGAAAATCTGATTAAAGGGAGCGAGTGCGAGAGATTTGGGGAGAGTGAGCGTGGGTCTTAGAGCGAGCGAGCGAGGAAGAACAGGAGGAGAGTGAGATATTCTTTTTTCACTTTTAGGGTTCAATTTCATTGCGTTAACTGCCCCAATTCATCATGGATCGGAAGCTTGTGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGTACTCCAAGTAAAAAGACAACTTCAGAAAGTCTTATTCAAATCTTTTGATGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGGTAGGACTATCTTCAATATCTTCACGTTTCGTTGACTTGATGCCTGATGCCGGATGCCTGATGCCTTACACCTCTTTGTTGCAGAATGTGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGAAATTTGATTGGGATTTATCGGTGAAGGCTGAAGAGGAATTGGGAAGAGAACAGGCAACAAAGCTGGAAGTAGAAAAAAAGATTGAATCTGGCCTAAAGAATTCAGGCTATAGATCATTTAAGGAAGTCTGTGGAGAACTGAGAAAAAAAAGTAGTCATTTTGAGAAATATGGAGAAATAACAGATCTATACATGCCGAAGGTACGTGTACATGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAGTTCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAATTAGGAGGTTCTGCAGTAGTTGTTGACAGAGCGACCCCCAAGGCAAGATTTTGCTTTTGTAATGATTTTGTTCGTCTAATTGAGGTCAATACACTATTTTTCCAGGATGATGATTTCAGGCCCATAGGGAAAATGCCGCGAGGAGGGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTAGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTCGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAGATTTGTGGACAACAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTGTGATGAATAGCGCGGCAGAATCTTTTGGGAGCTATGGTGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGACTTTGATGATTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCATACTGATGAGAGACAAACCAGCATTGAATTAGTAGTGATGGCTGATGGCTTGATAAATCAACGGCATGAATTGCCATATTTATGGAGAGTCGATATCTTTCAATGTCTGATTATTTGGTTTCTTTTGGCTTATTGTTTTTAACTGTCTCCATACCATTCCTTAGCTGAAACATGGATCAATTGGGGTCGTCGGGGTGTGGGATCGGGATCGGGATCAGGAGGGTATGTCGGCTGTATGAATGTTTGGTTAGTAGTTCTTAGTGAGTTATATTCTTCTCCAACTCTACTTTAAGAATTATCCATTTTATAACATCTCTAGGATGGTTTGGTTATCATTGAACAATAGATTGACTACTGAACGCTGGATGGCCTTTTTTTAGTTATGCGTTCTTTTTCTTTGCATCAGTCCTACAATGTTTTCGGATCCTTCCAATTAGACTAAATCCGTGGCCAAATAAGAGCACTCCCT

Coding sequence (CDS)

ATGGATCGGAAGCTTGTGGTTCTCGGCATTCCATGGGACATCGATACAGAAGGGCTAAGAGACTACATGAGCAAATTTGGAGAGTTGGAGGATTGTATTGTCATGAAGGTACTCCAAGTAAAAAGACAACTTCAGAAAGTCTTATTCAAATCTTTTGATGAGAGGTCAACTGGTCGGTCTCGTGGTTTTGGGTATGTGACCTTTGCAACCGATGAAGATGCTAAGGTAGGACTATCTTCAATATCTTCACGTTTCGTTGACTTGATGCCTGATGCCGGATGCCTGATGCCTTACACCTCTTTGTTGCAGAATGTGCTATCTAATGAGCACTTCCTTGGCAATAGAATGCTGGAAGTTAAAGTTGCCACACCAAAGAAATTTGATTGGGATTTATCGGTGAAGGCTGAAGAGGAATTGGGAAGAGAACAGGCAACAAAGCTGGAAGTAGAAAAAAAGATTGAATCTGGCCTAAAGAATTCAGGCTATAGATCATTTAAGGAAGTCTGTGGAGAACTGAGAAAAAAAAGTAGTCATTTTGAGAAATATGGAGAAATAACAGATCTATACATGCCGAAGGTACGTGTACATGACCAGGGCTCAAAAATCCATCGTGGAATAGGTTTCATCACTTTTGCAAGTTCAGGCACTAAATGTAGCAACTACTATCTTGTAGACTCTGTAGAGAATTTGATGGCTGAAACTCATGAATTAGGAGGTTCTGCAGTAGTTGTTGACAGAGCGACCCCCAAGGCAAGATTTTGCTTTTGTAATGATTTTGTTCGTCTAATTGAGGTCAATACACTATTTTTCCAGGATGATGATTTCAGGCCCATAGGGAAAATGCCGCGAGGAGGGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGATATGGTGCATACAATGCTTATATTTCTGCAGCAACAAGATATGCAGCACTTGGTGCTCCTACCTTATACGACCATCCAGTCTCAGTTTATGGTGGGAGAAGGGAATTTCGAGGGATGGGAAAAAAGATTTTTATTGGTAGGCTCCCACAAGAAGCATCTGCTGATGATCTCCGCCAATACTTTGGTAGATTTGGCCGTATATTGGATGTCTATGTACCCAAGGATCCTAAAAGATCTGGTCATCGAGGTTTTGGTTTCGTAACTTTTGCTGAAGATGGTGTAGCAGATCGTGTATCTCGAAGATCTCATGAGATTTGTGGACAACAGGTTGCTATCGATTCAGCCACTCCTCTTGATGATGCTGGAGCAGCTGGACCAAGTGGACCTTTTGTGATGAATAGCGCGGCAGAATCTTTTGGGAGCTATGGTGGACCTATGAGGACTTATGGAAGGATGTATGGAAGCCTGGACTTTGATGATTGGGGTTATGGAGTTGGTGGTGGAAGACCATCTAGAGCAGACTGGAGGTATCGGCCATACTGA

Protein sequence

MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRSRGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVKVATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFEKYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGSAVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Homology
[Close]
BLAST of CmoCh02G005840 vs. ExPASy Swiss-Prot
Match: Q08473 (RNA-binding protein squid OS=Drosophila melanogaster OX=7227 GN=sqd PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-12
Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 0 

Query: 340 KIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTF-AEDGVADRVSR 399
           KIF+G L  E S ++++ YFG+FG I++V +P D ++S  +GF F+TF +E  V D +  
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196

Query: 400 RSHEICGQQVAIDSATPLDD----------------AGAAGPSGPFVMNSAAESFGSYGG 459
              +I G++V +  ATP  +                 G  G  G    N+  +  GSYGG
Sbjct: 197 PKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGG 256

Query: 460 PMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
               YG  YG      +G    GG  +  D+ Y  Y
Sbjct: 257 ----YGGGYGGYGAGGYGDYYAGGYYNGYDYGYDGY 288

[Close]
BLAST of CmoCh02G005840 vs. ExPASy Swiss-Prot
Match: Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-11
Identity = 66/247 (26.72%), Postives = 99/247 (40.08%), Query Frame = 0 

Query: 4   KLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRSRGF 63
           KL V G+ W    E LR Y S++GE+ DC++MK                 +++T +SRGF
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK-----------------DKTTNQSRGF 70

Query: 64  GYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVKVAT 123
           G+V F                      D  C+         + S  H L  R ++ K  T
Sbjct: 71  GFVKF---------------------KDPNCVGTV------LASRPHTLDGRNIDPKPCT 130

Query: 124 PKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFEKYG 183
           P+    + S   E    +E  T+     KI  G            CGE   K  +F ++G
Sbjct: 131 PRGMQPERSRPREGWQQKEPRTENSRSNKIFVG-------GIPHNCGETELK-EYFNRFG 190

Query: 184 EITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGSAVV 243
            +T++ M    ++D   +  RG GFITF    +       VD   N+    H++ G  V 
Sbjct: 191 VVTEVVM----IYDAEKQRPRGFGFITFEDEQS-------VDQAVNM--HFHDIMGKKVE 192

Query: 244 VDRATPK 251
           V RA P+
Sbjct: 251 VKRAEPR 192

[Close]
BLAST of CmoCh02G005840 vs. ExPASy Swiss-Prot
Match: P48809 (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-11
Identity = 38/135 (28.15%), Postives = 68/135 (50.37%), Query Frame = 0 

Query: 335 RGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVAD 394
           +G G K+F+G LP   +  DLR +F R+G++ +V +  D ++   RGFGF++F E+   +
Sbjct: 92  KGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151

Query: 395 RVSRRSH-EICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGS 454
            V+   +  + G+QV I  A P D +G    +     ++   ++G  G     +G  +  
Sbjct: 152 HVTNERYINLNGKQVEIKKAEPRDGSGGQNSNN----STVGGAYGKLGNECSHWGPHHAP 211

Query: 455 LDFDDWGYGVGGGRP 469
           ++      G  GG P
Sbjct: 212 INMMQGQNGQMGGPP 222

[Close]
BLAST of CmoCh02G005840 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-10
Identity = 50/152 (32.89%), Postives = 74/152 (48.68%), Query Frame = 0 

Query: 330 GRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAE 389
           G R       KIF+G +P      +LR+YF +FG + +V +  D ++   RGFGF+TF +
Sbjct: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163

Query: 390 DGVADR-VSRRSHEICGQQVAIDSATPLDD----AGAAGPS--GPFVMNSAAESFGSYGG 449
           +   D+ V+   H+I G++V +  A P D      G  G S  G  V+ +AA   G  G 
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAAN--GWAGQ 223

Query: 450 PMRTYGRMYGSLDFDDW---GYGVGGGRPSRA 472
           P  T+ + YG      W   G  +GG  P  A
Sbjct: 224 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPA 251

[Close]
BLAST of CmoCh02G005840 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-10
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 0 

Query: 330 GRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAE 389
           G R       KIF+G +P      +LR+YF +FG + +V +  D ++   RGFGF+TF +
Sbjct: 104 GPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163

Query: 390 DGVADR-VSRRSHEICGQQVAIDSATPLDD----AGAAGPS--GPFVMNSAAESFGSYGG 449
           +   D+ V+   H+I G++V +  A P D      G  G S  G  V  SAA   G  G 
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAAN--GWAGQ 223

Query: 450 PMRTYGRMYGSLDFDDW---GYGVGGGRPSRA 472
           P  T+ + YG      W   G  +GG  P  A
Sbjct: 224 PPPTWQQGYGPQGM--WVPAGQAIGGYGPPPA 251

[Close]
BLAST of CmoCh02G005840 vs. ExPASy TrEMBL
Match: A0A6J1G8I8 (RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451705 PE=4 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 1.8e-180
Identity = 352/478 (73.64%), Postives = 361/478 (75.52%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            NVLSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NVLSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHELGGS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELGGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPRGGGGGGGGGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 375

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 375

[Close]
BLAST of CmoCh02G005840 vs. ExPASy TrEMBL
Match: A0A6J1G8F8 (RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451705 PE=4 SV=1)

HSP 1 Score: 632.9 bits (1631), Expect = 1.1e-177
Identity = 350/478 (73.22%), Postives = 359/478 (75.10%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            NVLSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NVLSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHELGGS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELGGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPRGGGGGGGGGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYG  REFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYG--REFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 373

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 373

[Close]
BLAST of CmoCh02G005840 vs. ExPASy TrEMBL
Match: A0A6J1L1Z7 (RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499677 PE=4 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 4.8e-173
Identity = 343/478 (71.76%), Postives = 352/478 (73.64%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            N LSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NALSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHEL GS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELEGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPR    GG GGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPR----GGRGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 371

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAG SG FVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGASGTFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 371

[Close]
BLAST of CmoCh02G005840 vs. ExPASy TrEMBL
Match: A0A6J1KZI2 (RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499677 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 2.9e-170
Identity = 341/478 (71.34%), Postives = 350/478 (73.22%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            N LSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NALSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHEL GS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELEGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPR    GG GGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPR----GGRGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYG  REFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYG--REFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 369

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAG SG FVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGASGTFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 369

[Close]
BLAST of CmoCh02G005840 vs. ExPASy TrEMBL
Match: A0A6J1G808 (RNA-binding protein Musashi homolog 2-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111451705 PE=4 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 3.3e-166
Identity = 330/456 (72.37%), Postives = 339/456 (74.34%), Query Frame = 0 

Query: 23  MSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRSRGFGYVTFATDEDAKVGLSSIS 82
           MSKFGELEDCIVMK                 ERSTGRSRGFGYVTFATDEDAK       
Sbjct: 1   MSKFGELEDCIVMK-----------------ERSTGRSRGFGYVTFATDEDAK------- 60

Query: 83  SRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVKVATPKKFDWDLSVKAEEELGRE 142
                                NVLSNEHFLGNRMLEVKVATPK+         E     +
Sbjct: 61  ---------------------NVLSNEHFLGNRMLEVKVATPKE---------EMRAPPK 120

Query: 143 QATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFEKYGEITDLYMPKVRVHDQGSKI 202
           + T++ V  +I   +  + +R             SHFEKYGEITDLYMPK    DQGSKI
Sbjct: 121 RVTRIFV-ARISQSVTEAAFR-------------SHFEKYGEITDLYMPK----DQGSKI 180

Query: 203 HRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGSAVVVDRATPKARFCFCNDFVRL 262
           HRGIGFITFASS          DSVENLMAETHELGGSAVVVDRATPK            
Sbjct: 181 HRGIGFITFASS----------DSVENLMAETHELGGSAVVVDRATPK------------ 240

Query: 263 IEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYD 322
                    DDDFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYD
Sbjct: 241 ---------DDDFRPIGKMPRGGGGGGGGGGGGGGGYGAYNAYISAATRYAALGAPTLYD 300

Query: 323 HPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGF 382
           HPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGF
Sbjct: 301 HPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGF 353

Query: 383 GFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGG 442
           GFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGG
Sbjct: 361 GFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAGAAGPSGPFVMNSAAESFGSYGG 353

Query: 443 PMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           PMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 PMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 353

[Close]
BLAST of CmoCh02G005840 vs. NCBI nr
Match: XP_022947989.1 (RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 642.1 bits (1655), Expect = 3.8e-180
Identity = 352/478 (73.64%), Postives = 361/478 (75.52%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            NVLSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NVLSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHELGGS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELGGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPRGGGGGGGGGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 375

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 375

[Close]
BLAST of CmoCh02G005840 vs. NCBI nr
Match: XP_022947990.1 (RNA-binding protein Musashi homolog 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 632.9 bits (1631), Expect = 2.3e-177
Identity = 350/478 (73.22%), Postives = 359/478 (75.10%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            NVLSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NVLSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHELGGS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELGGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPRGGGGGGGGGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYG  REFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYG--REFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 373

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 373

[Close]
BLAST of CmoCh02G005840 vs. NCBI nr
Match: XP_023534162.1 (RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 629.8 bits (1623), Expect = 1.9e-176
Identity = 347/478 (72.59%), Postives = 358/478 (74.90%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            N LSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NALSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFA+S          DSVENLMAETHELGGS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFANS----------DSVENLMAETHELGGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPR  GGGGGGGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPR--GGGGGGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 373

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAGPSGPFVM+SAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGPSGPFVMSSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 373

[Close]
BLAST of CmoCh02G005840 vs. NCBI nr
Match: KAG6605269.1 (RNA-binding protein Musashi-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 626.3 bits (1614), Expect = 2.1e-175
Identity = 349/480 (72.71%), Postives = 358/480 (74.58%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            N LSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NALSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHELGGS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELGGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPR--GGGGGGGGGGGGGGG 300
           AVVVDRATPK                     DDDFRPIGKMPR  GGGGGGGGGGGGGGG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPRGGGGGGGGGGGGGGGGG 300

Query: 301 YGAYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQY 360
           YGAYNAYISAATRYAALGAPTLYDHPVSVYG  REFRGMGKKIFIGRLPQEASADDLRQY
Sbjct: 301 YGAYNAYISAATRYAALGAPTLYDHPVSVYG--REFRGMGKKIFIGRLPQEASADDLRQY 360

Query: 361 FGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDD 420
           FGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDD
Sbjct: 361 FGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDD 375

Query: 421 AGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 375

[Close]
BLAST of CmoCh02G005840 vs. NCBI nr
Match: XP_023007075.1 (RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 617.5 bits (1591), Expect = 9.9e-173
Identity = 343/478 (71.76%), Postives = 352/478 (73.64%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK                 ERSTGRS
Sbjct: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMK-----------------ERSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFATDEDAK                            N LSNEHFLGNRMLEVK
Sbjct: 61  RGFGYVTFATDEDAK----------------------------NALSNEHFLGNRMLEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I   +  + +R             SHFE
Sbjct: 121 VATPKE---------EMRAPPKRVTRIFV-ARISQSVTEAAFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           KYGEITDLYMPK    DQGSKIHRGIGFITFASS          DSVENLMAETHEL GS
Sbjct: 181 KYGEITDLYMPK----DQGSKIHRGIGFITFASS----------DSVENLMAETHELEGS 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDFRPIGKMPRGGGGGGGGGGGGGGGYG 300
           AVVVDRATPK                     DDDFRPIGKMPR    GG GGGGGGGGYG
Sbjct: 241 AVVVDRATPK---------------------DDDFRPIGKMPR----GGRGGGGGGGGYG 300

Query: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360
           AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG
Sbjct: 301 AYNAYISAATRYAALGAPTLYDHPVSVYGGRREFRGMGKKIFIGRLPQEASADDLRQYFG 360

Query: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 420
           RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG
Sbjct: 361 RFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATPLDDAG 371

Query: 421 AAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 479
           AAG SG FVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY
Sbjct: 421 AAGASGTFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRYRPY 371

[Close]
BLAST of CmoCh02G005840 vs. TAIR 10
Match: AT4G36960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-126
Identity = 263/483 (54.45%), Postives = 306/483 (63.35%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           M+RKLVVLGIPWDID++GL+DYMSKFG+LEDCIVMK                 +RSTGRS
Sbjct: 1   MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMK-----------------DRSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFA+ EDAK                            N L  EHFLGNR+LEVK
Sbjct: 61  RGFGYVTFASAEDAK----------------------------NALKGEHFLGNRILEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I S +  S +R             SHFE
Sbjct: 121 VATPKE---------EMRQPAKKVTRIFV-ARIPSSVSESDFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           +YGEITDLYMPK    D  SK HRGIGFITF+S+          DSVE+LM +TH+LGG+
Sbjct: 181 RYGEITDLYMPK----DYNSKQHRGIGFITFSSA----------DSVEDLMEDTHDLGGT 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDF----RPIGKMPRGGGGGGGGGGGGG 300
            V VDRATPK                     +DD      P+ +M R       GG G  
Sbjct: 241 TVAVDRATPK---------------------EDDHPPRPPPVARMSR-PPVAIAGGFGAP 300

Query: 301 GGYGAYNAYISAATRYAALGAPTLYDHPVSVYG-GRREFRGMGKKIFIGRLPQEASADDL 360
           GGYGAY+AYISAATRYAALGAPTLYD+P + YG G    RG+G KIF+GRLPQEAS DDL
Sbjct: 301 GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDL 360

Query: 361 RQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATP 420
           R YFGRFG I D Y+PKDPKRSGHRGFGFVTFAE+GVADRV+RRSHEICGQ+VAIDSATP
Sbjct: 361 RDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATP 379

Query: 421 LDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRY 479
           LD+AG +  +   + +S  E FG YGGPMR +GRMYG +  DDWGYG+   RPSR D RY
Sbjct: 421 LDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWGYGMPNARPSRPDRRY 379

[Close]
BLAST of CmoCh02G005840 vs. TAIR 10
Match: AT4G36960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-126
Identity = 263/483 (54.45%), Postives = 306/483 (63.35%), Query Frame = 0 

Query: 1   MDRKLVVLGIPWDIDTEGLRDYMSKFGELEDCIVMKVLQVKRQLQKVLFKSFDERSTGRS 60
           M+RKLVVLGIPWDID++GL+DYMSKFG+LEDCIVMK                 +RSTGRS
Sbjct: 1   MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMK-----------------DRSTGRS 60

Query: 61  RGFGYVTFATDEDAKVGLSSISSRFVDLMPDAGCLMPYTSLLQNVLSNEHFLGNRMLEVK 120
           RGFGYVTFA+ EDAK                            N L  EHFLGNR+LEVK
Sbjct: 61  RGFGYVTFASAEDAK----------------------------NALKGEHFLGNRILEVK 120

Query: 121 VATPKKFDWDLSVKAEEELGREQATKLEVEKKIESGLKNSGYRSFKEVCGELRKKSSHFE 180
           VATPK+         E     ++ T++ V  +I S +  S +R             SHFE
Sbjct: 121 VATPKE---------EMRQPAKKVTRIFV-ARIPSSVSESDFR-------------SHFE 180

Query: 181 KYGEITDLYMPKVRVHDQGSKIHRGIGFITFASSGTKCSNYYLVDSVENLMAETHELGGS 240
           +YGEITDLYMPK    D  SK HRGIGFITF+S+          DSVE+LM +TH+LGG+
Sbjct: 181 RYGEITDLYMPK----DYNSKQHRGIGFITFSSA----------DSVEDLMEDTHDLGGT 240

Query: 241 AVVVDRATPKARFCFCNDFVRLIEVNTLFFQDDDF----RPIGKMPRGGGGGGGGGGGGG 300
            V VDRATPK                     +DD      P+ +M R       GG G  
Sbjct: 241 TVAVDRATPK---------------------EDDHPPRPPPVARMSR-PPVAIAGGFGAP 300

Query: 301 GGYGAYNAYISAATRYAALGAPTLYDHPVSVYG-GRREFRGMGKKIFIGRLPQEASADDL 360
           GGYGAY+AYISAATRYAALGAPTLYD+P + YG G    RG+G KIF+GRLPQEAS DDL
Sbjct: 301 GGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDL 360

Query: 361 RQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGQQVAIDSATP 420
           R YFGRFG I D Y+PKDPKRSGHRGFGFVTFAE+GVADRV+RRSHEICGQ+VAIDSATP
Sbjct: 361 RDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARRSHEICGQEVAIDSATP 379

Query: 421 LDDAGAAGPSGPFVMNSAAESFGSYGGPMRTYGRMYGSLDFDDWGYGVGGGRPSRADWRY 479
           LD+AG +  +   + +S  E FG YGGPMR +GRMYG +  DDWGYG+   RPSR D RY
Sbjct: 421 LDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDDWGYGMPNARPSRPDRRY 379

[Close]
BLAST of CmoCh02G005840 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-12
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 340 KIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 399
           KIF+G L +E ++ +  ++FG++G I D  + KD K    RGFGFVT+A+  V D+V + 
Sbjct: 43  KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102

Query: 400 SHEICGQQVAIDSATP 416
           +H I G+QV I    P
Sbjct: 103 NHIIIGKQVEIKRTIP 118

[Close]
BLAST of CmoCh02G005840 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-12
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 340 KIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 399
           K+FIG +  E S D LR YF  FG +L+  + KD      RGFGFV FA+  VA+RV   
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 400 SHEICGQQVAIDSATPLDD 419
            H I G+ V    A P DD
Sbjct: 67  KHIIDGKIVEAKKAVPRDD 85

[Close]
BLAST of CmoCh02G005840 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-12
Identity = 36/79 (45.57%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 340 KIFIGRLPQEASADDLRQYFGRFGRILDVYVPKDPKRSGHRGFGFVTFAEDGVADRVSRR 399
           K+FIG +  E S D LR YF  FG +L+  + KD      RGFGFV FA+  VA+RV   
Sbjct: 7   KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66

Query: 400 SHEICGQQVAIDSATPLDD 419
            H I G+ V    A P DD
Sbjct: 67  KHIIDGKIVEAKKAVPRDD 85

The following BLAST results are available for this feature:
BLAST of CmoCh02G005840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q084735.4e-1232.05RNA-binding protein squid OS=Drosophila melanogaster OX=7227 GN=sqd PE=1 SV=3[more]
Q98SJ21.2e-1126.72DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1[more]
P488095.9e-1128.15Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 G... [more]
Q96EP52.9e-1032.89DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1[more]
Q9JII52.9e-1033.55DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2[more]
BLAST of CmoCh02G005840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G8I81.8e-18073.64RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita moschata OX=3... [more]
A0A6J1G8F81.1e-17773.22RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita moschata OX=3... [more]
A0A6J1L1Z74.8e-17371.76RNA-binding protein Musashi homolog 2-like isoform X1 OS=Cucurbita maxima OX=366... [more]
A0A6J1KZI22.9e-17071.34RNA-binding protein Musashi homolog 2-like isoform X2 OS=Cucurbita maxima OX=366... [more]
A0A6J1G8083.3e-16672.37RNA-binding protein Musashi homolog 2-like isoform X3 OS=Cucurbita moschata OX=3... [more]
BLAST of CmoCh02G005840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947989.13.8e-18073.64RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita moschata][more]
XP_022947990.12.3e-17773.22RNA-binding protein Musashi homolog 2-like isoform X2 [Cucurbita moschata][more]
XP_023534162.11.9e-17672.59RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita pepo subsp. pep... [more]
KAG6605269.12.1e-17572.71RNA-binding protein Musashi-like 2, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_023007075.19.9e-17371.76RNA-binding protein Musashi homolog 2-like isoform X1 [Cucurbita maxima][more]
BLAST of CmoCh02G005840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G36960.11.1e-12654.45RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G36960.21.1e-12654.45RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G40490.12.5e-1242.11RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.13.2e-1245.57RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.23.2e-1245.57RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 4..89
e-value: 7.3E-7
score: 38.8
coord: 340..411
e-value: 1.1E-15
score: 68.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 341..395
e-value: 2.1E-12
score: 46.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 339..415
score: 16.005526
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..124
score: 13.327828
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 170..252
e-value: 1.0E-8
score: 37.1
coord: 337..419
e-value: 5.1E-20
score: 73.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..127
e-value: 5.5E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR48027HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATEDcoord: 103..478
coord: 1..79
NoneNo IPR availablePANTHERPTHR48027:SF15OS01G0945800 PROTEINcoord: 103..478
coord: 1..79
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 339..425
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 177..250
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005840.1CmoCh02G005840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding