CmoCh02G005710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G005710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRNase H domain-containing protein
LocationCmo_Chr02: 3340739 .. 3341431 (-)
RNA-Seq ExpressionCmoCh02G005710
SyntenyCmoCh02G005710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCCATATCTTCACAGCCTTGCAACCCTCTGGACATCATGTGTTATCTCGTGGAGTGCAAGACGTGCAACAAGACCTCCTGGAAGGGCTGTGGCAATCACCTGCCTGATCTCTATAAGCGAATTGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCCGGCGTCGTCGTGCCCCTTGAGGATTCTGCTGACATGAAAACCGCACCGCCAACGATGGCTAACCCGAAATCATCTGTCACTGAAGGTACACCGCTACACATATCTCAACTCAACTCGTTCAATTTAGATTGTGGTAATTTATAATGACATCTTCTTCAAAGTCAAATTTGGTGACGTTGAACAAGAAAATAATAAAATATTTAATAATTTCTAAAATCAATAGAAATTTGGCGACCAAAATAAAATTATTACAAAGCATGTAATTTTAGTTTTCTTATTAAAAAAATTAGCCAATCACAAAGAAATTATTATAAACATGTTTTTGTAAATAAAAAATAACGAACAATAAAAGATAAATAAATATCGTTACGTGTTTTGTAGGTACTGAAAGTTGGGGTTCGTTTGTGCAGGTAAGACAGTTGATAAGGAAGCTTAGGGAAGCGTGGAGTGGCTAAGTTAGAGAGGTTTGAGTCATTTAAGCAATTTCATATGAATTATTGTTATATAAATAAGGACGGGTTTGTACGGGAT

mRNA sequence

CTCCCCATATCTTCACAGCCTTGCAACCCTCTGGACATCATGTGTTATCTCGTGGAGTGCAAGACGTGCAACAAGACCTCCTGGAAGGGCTGTGGCAATCACCTGCCTGATCTCTATAAGCGAATTGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCCGGCGTCGTCGTGCCCCTTGAGGATTCTGCTGACATGAAAACCGCACCGCCAACGATGGCTAACCCGAAATCATCTGTCACTGAAGGTACACCGCTACACATATCTCAACTCAACTCGTTCAATTTAGATTGTGGTACTGAAAGTTGGGGTTCGTTTGTGCAGGTAAGACAGTTGATAAGGAAGCTTAGGGAAGCGTGGAGTGGCTAAGTTAGAGAGGTTTGAGTCATTTAAGCAATTTCATATGAATTATTGTTATATAAATAAGGACGGGTTTGTACGGGAT

Coding sequence (CDS)

CTCCCCATATCTTCACAGCCTTGCAACCCTCTGGACATCATGTGTTATCTCGTGGAGTGCAAGACGTGCAACAAGACCTCCTGGAAGGGCTGTGGCAATCACCTGCCTGATCTCTATAAGCGAATTGAGAAGGGAAAGCACTGCACTTGCCGCCCCTGGCCCGGCGTCGTCGTGCCCCTTGAGGATTCTGCTGACATGAAAACCGCACCGCCAACGATGGCTAACCCGAAATCATCTGTCACTGAAGGTACACCGCTACACATATCTCAACTCAACTCGTTCAATTTAGATTGTGGTACTGAAAGTTGGGGTTCGTTTGTGCAGGTAAGACAGTTGATAAGGAAGCTTAGGGAAGCGTGGAGTGGCTAA

Protein sequence

LPISSQPCNPLDIMCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTMANPKSSVTEGTPLHISQLNSFNLDCGTESWGSFVQVRQLIRKLREAWSG
Homology
BLAST of CmoCh02G005710 vs. ExPASy TrEMBL
Match: A0A0A0LJK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MC LV CK C+K +WKGCG HLP LYK +EKGKHC C PWPGVVVP ED  D  T  P+ 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPD--TTKPSQ 60

Query: 74 ANPKSSVTEG 84
              SSV+ G
Sbjct: 61 PVQPSSVSTG 68

BLAST of CmoCh02G005710 vs. ExPASy TrEMBL
Match: A0A0L9UR73 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g038300 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 14  MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
           MCY VEC++C + +W GCGNHL  LY  I++G HCTCR WPGVV+P   S D  T  PT 
Sbjct: 1   MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIP-PRSTDTATQQPTQ 60

Query: 74  ANPKSSVTEGTP--LHISQLNSFNLDCGTES 103
            N  S   +G P  L ++QL  F L   T S
Sbjct: 61  PNNSS---QGKPFQLPLNQLRYFKLYVNTNS 87

BLAST of CmoCh02G005710 vs. ExPASy TrEMBL
Match: A0A2C9USL7 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G132300 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-15
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MC+ V+CK C K SW GCG HL  +Y  I+KG HC CRPWPGV +P E+ A  + AP T+
Sbjct: 1  MCFQVDCKQCGKHSWGGCGKHLSAIYDGIDKGNHCMCRPWPGVTIPTEEKASGQQAPKTL 60

Query: 74 ANPKSSVTEG 84
          A   S+ + G
Sbjct: 61 AASSSTTSSG 70

BLAST of CmoCh02G005710 vs. ExPASy TrEMBL
Match: A0A5A7TSL2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003810 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.2e-15
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 17 LVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMK 68
          LV CK C+K +WKGCG HLP LYK +EKGKHC CRPWPGVVVP ED   +K
Sbjct: 2  LVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCHCRPWPGVVVPPEDVPGLK 52

BLAST of CmoCh02G005710 vs. ExPASy TrEMBL
Match: A0A3N7F5W7 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G034000 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSA 65
          MCY V CK CNK SW GCGNHL  +Y  IEKGKHCTC+PWPGVV+  E++A
Sbjct: 35 MCYKVTCKQCNKYSWGGCGNHLTAVYAGIEKGKHCTCKPWPGVVILTEETA 85

BLAST of CmoCh02G005710 vs. NCBI nr
Match: KAG6605256.1 (hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.2e-31
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPG-VVVPLEDSADMKTAPPT 73
          MCYLVECKTCNKTSWKGCGNHLPDLY RIEKGKHCTCRPWPG VVVPL+DSADMKTAPP+
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 74 MANPKSSVTEG 84
          MAN KSSV EG
Sbjct: 61 MANSKSSVPEG 71

BLAST of CmoCh02G005710 vs. NCBI nr
Match: KAG7035219.1 (hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 6.3e-31
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPG-VVVPLEDSADMKTAPPT 73
          MCYLVECKTCNKTSWKGCGNHLPDLY RIEKGKHCTCRPWPG VVVPL+DSADMKTAPP+
Sbjct: 1  MCYLVECKTCNKTSWKGCGNHLPDLYNRIEKGKHCTCRPWPGVVVVPLQDSADMKTAPPS 60

Query: 74 MANPKSSVTEG 84
          MAN KSSV +G
Sbjct: 61 MANSKSSVPKG 71

BLAST of CmoCh02G005710 vs. NCBI nr
Match: KGN62035.1 (hypothetical protein Csa_006238 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MC LV CK C+K +WKGCG HLP LYK +EKGKHC C PWPGVVVP ED  D  T  P+ 
Sbjct: 1  MCMLVVCKDCSKYTWKGCGRHLPGLYKSVEKGKHCNCHPWPGVVVPPEDVPD--TTKPSQ 60

Query: 74 ANPKSSVTEG 84
              SSV+ G
Sbjct: 61 PVQPSSVSTG 68

BLAST of CmoCh02G005710 vs. NCBI nr
Match: KAG8641286.1 (hypothetical protein MANES_13G132300v8 [Manihot esculenta])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 14 MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
          MC+ V+CK C K SW GCG HL  +Y  I+KG HC CRPWPGV +P E+ A  + AP T+
Sbjct: 1  MCFQVDCKQCGKHSWGGCGKHLSAIYDGIDKGNHCMCRPWPGVTIPTEEKASGQQAPKTL 60

Query: 74 ANPKSSVTEGT 85
          A   S+ + G+
Sbjct: 61 AASSSTTSSGS 71

BLAST of CmoCh02G005710 vs. NCBI nr
Match: KOM45077.1 (hypothetical protein LR48_Vigan06g038300 [Vigna angularis])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 14  MCYLVECKTCNKTSWKGCGNHLPDLYKRIEKGKHCTCRPWPGVVVPLEDSADMKTAPPTM 73
           MCY VEC++C + +W GCGNHL  LY  I++G HCTCR WPGVV+P   S D  T  PT 
Sbjct: 1   MCYRVECRSCGRYTWGGCGNHLTTLYASIDEGMHCTCRSWPGVVIP-PRSTDTATQQPTQ 60

Query: 74  ANPKSSVTEGTP--LHISQLNSFNLDCGTES 103
            N  S   +G P  L ++QL  F L   T S
Sbjct: 61  PNNSS---QGKPFQLPLNQLRYFKLYVNTNS 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJK57.3e-1761.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287170 PE=4 SV=1[more]
A0A0L9UR732.3e-1549.45Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g038300 PE... [more]
A0A2C9USL73.1e-1551.43Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G132300 PE=4 SV=... [more]
A0A5A7TSL25.2e-1570.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A3N7F5W71.2e-1468.63Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G034000 PE=4 ... [more]
Match NameE-valueIdentityDescription
KAG6605256.12.2e-3191.55hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035219.16.3e-3190.14hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma][more]
KGN62035.11.5e-1661.43hypothetical protein Csa_006238 [Cucumis sativus][more]
KAG8641286.14.8e-1550.70hypothetical protein MANES_13G132300v8 [Manihot esculenta][more]
KOM45077.14.8e-1549.45hypothetical protein LR48_Vigan06g038300 [Vigna angularis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34724:SF2OS12G0596101 PROTEINcoord: 14..70
NoneNo IPR availablePANTHERPTHR34724OS12G0596101 PROTEINcoord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005710.1CmoCh02G005710.1mRNA