CmoCh02G005490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G005490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L26
Location	Cmo_Chr02: 3114026 .. 3114466 (-)
RNA-Seq Expression	CmoCh02G005490
Synteny	CmoCh02G005490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAATCCCAGGGTCTCAAGCTCCCGCCGCAAGAATCGCAAGGCTCACTTCTCAGCACCGTCGAGTGTACGGCGGGTTCTGATGAGTGCGCCTCTCTCCGGCGATTTGCGCTCCAAGTACAATGTTCGCTCGATGCCGATTCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGAAAGGTCGTTCAGGTCTACCGTCGCAAGTGGGTCATTCACATCGAACGCGTTACCAGAGAGAAGGTGAACGGCTCCACCGTCAACGTCGGAATGAATCCGTCGAAGGTTATGATCACAAAGCTCAAGTTGGACAAGGATAGGAAGTCGCTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTTCTGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAGAGCGTCGACTAA

mRNA sequence

ATGAAGTACAATCCCAGGGTCTCAAGCTCCCGCCGCAAGAATCGCAAGGCTCACTTCTCAGCACCGTCGAGTGTACGGCGGGTTCTGATGAGTGCGCCTCTCTCCGGCGATTTGCGCTCCAAGTACAATGTTCGCTCGATGCCGATTCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGAAAGGTCGTTCAGGTCTACCGTCGCAAGTGGGTCATTCACATCGAACGCGTTACCAGAGAGAAGGTGAACGGCTCCACCGTCAACGTCGGAATGAATCCGTCGAAGGTTATGATCACAAAGCTCAAGTTGGACAAGGATAGGAAGTCGCTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTTCTGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAGAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTACAATCCCAGGGTCTCAAGCTCCCGCCGCAAGAATCGCAAGGCTCACTTCTCAGCACCGTCGAGTGTACGGCGGGTTCTGATGAGTGCGCCTCTCTCCGGCGATTTGCGCTCCAAGTACAATGTTCGCTCGATGCCGATTCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGAAAGGTCGTTCAGGTCTACCGTCGCAAGTGGGTCATTCACATCGAACGCGTTACCAGAGAGAAGGTGAACGGCTCCACCGTCAACGTCGGAATGAATCCGTCGAAGGTTATGATCACAAAGCTCAAGTTGGACAAGGATAGGAAGTCGCTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTTCTGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAGAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDRKAKGRASSDKDKGTKFTAEDIMQSVD

Homology

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BLAST of CmoCh02G005490 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 123/146 (84.25%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RRV+MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNG+TVNVG+ PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRA++DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of CmoCh02G005490 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.1e-64
Identity = 123/146 (84.25%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRRVLMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIER+TREKVNGSTVNVG+N S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KA GRA++DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of CmoCh02G005490 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.3e-59
Identity = 116/145 (80.00%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HF+A SS RRV MS+PLS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSV 146
           KAKGRA++DKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of CmoCh02G005490 vs. ExPASy Swiss-Prot
Match: Q9UNX3 (60S ribosomal protein L26-like 1 OS=Homo sapiens OX=9606 GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-44
Identity = 95/134 (70.90%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS VRR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IERV REK NG+TV+VG++PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASSDKDKG 134
           RKAK R    K+KG
Sbjct: 121 RKAKSR-QVGKEKG 133

[Close]

BLAST of CmoCh02G005490 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-44
Identity = 97/142 (68.31%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K+VI+IERV REK NG+TV+VG++PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASSDKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of CmoCh02G005490 vs. ExPASy TrEMBL
Match: A0A6J1L4P7 (60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.5e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRASSDKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. ExPASy TrEMBL
Match: A0A6J1G998 (60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451868 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.5e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRASSDKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. ExPASy TrEMBL
Match: A0A6J1D6T1 (60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.0e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNGSTVNVG+NPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. ExPASy TrEMBL
Match: A0A5A7TS06 (60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00090 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.8e-70
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. ExPASy TrEMBL
Match: A0A1S3C7Q4 (60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.8e-70
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. NCBI nr
Match: XP_022948229.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023532418.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6605230.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035196.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRASSDKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. NCBI nr
Match: XP_022149443.1 (60S ribosomal protein L26-1-like [Momordica charantia])

HSP 1 Score: 274.2 bits (700), Expect = 6.3e-70
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNGSTVNVG+NPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. NCBI nr
Match: XP_008457837.1 (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S ribosomal protein L26-1-like [Benincasa hispida] >KAA0045834.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa] >TYJ99449.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. NCBI nr
Match: XP_022931741.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023521000.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6571308.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019317.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.3 bits (695), Expect = 2.4e-69
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+NPSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. NCBI nr
Match: XP_004148028.1 (60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein Csa_006447 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of CmoCh02G005490 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 247.3 bits (630), Expect = 7.7e-66
Identity = 123/146 (84.25%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RRV+MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWVIHIER+TREKVNG+TVNVG+ PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KAKGRA++DK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

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BLAST of CmoCh02G005490 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-65
Identity = 123/146 (84.25%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRRVLMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKWVIHIER+TREKVNGSTVNVG+N S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 147
           KA GRA++DK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of CmoCh02G005490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	1.1e-64	84.25	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	3.1e-64	84.25	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	2.3e-59	80.00	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
Q9UNX3	6.2e-44	70.90	60S ribosomal protein L26-like 1 OS=Homo sapiens OX=9606 GN=RPL26L1 PE=1 SV=1	[more]
P61257	6.2e-44	68.31	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]

BLAST of CmoCh02G005490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L4P7	9.5e-72	100.00	60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=...	[more]
A0A6J1G998	9.5e-72	100.00	60S ribosomal protein L26-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451868 P...	[more]
A0A6J1D6T1	3.0e-70	95.89	60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 ...	[more]
A0A5A7TS06	6.8e-70	95.89	60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C7Q4	6.8e-70	95.89	60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV...	[more]

BLAST of CmoCh02G005490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948229.1	2.0e-71	100.00	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S riboso...	[more]
XP_022149443.1	6.3e-70	95.89	60S ribosomal protein L26-1-like [Momordica charantia]	[more]
XP_008457837.1	1.4e-69	95.89	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S r...	[more]
XP_022931741.1	2.4e-69	95.89	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S riboso...	[more]
XP_004148028.1	1.2e-68	95.21	60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein C...	[more]

BLAST of CmoCh02G005490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	7.7e-66	84.25	Translation protein SH3-like family protein	[more]
AT5G67510.1	2.2e-65	84.25	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 4.9E-6 score: 36.1
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 2.5E-9 score: 36.7
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..144 e-value: 1.1E-56 score: 192.8
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 6.9E-38 score: 129.5
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 6.9E-52 score: 172.7
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20.629236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..146
None	No IPR available	PANTHER	PTHR11143:SF15	60S RIBOSOMAL PROTEIN L26-1-LIKE	coord: 1..146
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 1.32294E-15 score: 64.8434
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G005490.1	CmoCh02G005490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome