CmoCh02G004910 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA polymerase sigma factor sigA-like
Location	Cmo_Chr02: 2684287 .. 2687284 (-)
RNA-Seq Expression	CmoCh02G004910
Synteny	CmoCh02G004910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCGAAGCGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGGTTTTATATCTCAATGATCATAGGTTGGGACAGAACCAAGTTTCCACTACGAAGAGTGTGGTAATAGCGAAACATTCGGCTGACTTTTCTCCGAGCTATCCACCGTCGAATCGGCACGTGCAGTGCATCAAAGCTGTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGCTTAATAACACCACCATTTGGGAAGATGAAGAAACTGATCTTAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTAGAGAAGCAATGGAATCTATCTTTCGAGCAAACTGTGTCGACCGATGTGCCTAGAGGAAAAACAGAGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGGATGAATTCTAAGAGGAAGATACAGAGCAAACATGTTTTTATGGCTCAACCAAAAATCAGTAAACAGCAAAAACCTAGTATCAGTCCTGAGCTACTCCAAAATCGATTGAGGGGCTATGTGAAAGGTTTAGTAAGTGAAGAAATACTTCCCCATTCGGAAGTTGTACGCCTTTCGAAGAAGATAAAAGTCGGTCTTGCATTGGAGGAGCATAAAACCAGGTTACCTCATGCTCTTCTTGTTCAGATTCACATAGATTACTGCTTGCCCCTTTCTTTCCATGTTAGTCTTTCCTTTTAATCATAATAACTTGACAGATGCGAGAAAGGAAACTATTAAGTATATGGAATTCCATTACACTATTGCCAAAACGACTAGCTCAGTAACTCTCAGATCCCACATCGGAATTGTTAGATTCCACATCGGTTAGGGAGGAGAACGAAACACCATTTATAAGGGTGTGGAAACCTTTTCCTAGCAAACGCATTTTAAAAACCTTGAGGGAAGCCCGAAAGGGAAATCCTAAAGAGGATAATATCTGCTAGCGGTGGGCTAGTATTGTTACAATAATGATATTATGTTCATAGTGTACTTTGCTCTCCCTAACATCTGTAATGACTCCCAGACTGAAGGAAAGACTAAGATGTGAGCCCTCTGAAGAACAACTGGCAATTTCACTTGAGATTTCTTGTGCCGAATTACGGTCGAGAGTAATGGAATGTTCATTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTAGTAATGTCAATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCCGACTTAGTTCAGGTGAGGAGCTTATGACAGTCCCATAGAGCTAACTCTAACCCTATTAGCTTCCCCTAATATGAAGAGTTTGTTTATGTTTAATGTAGGGTGGCTTGATCGGACTTCTCCGAGGAATCGAAAAGTTTGATTCCTCAAAGGGATTCAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGTGAGAATATAAACACTTCGAAAACAAATTGATACCCTGTTACTAGCCAAAGCATAAGCCTATTGAAAAGAAAACTGGATATTTGAGTTCAAAGTATTTAATGCAAGTACCTGAACATGTCGAGCGTATATAGCGTTACAGCAAGCGCTGACAGAATTTCAATGTCTTCATCCATGCCTAGGGTGTTTCAAGAGCATTAGTTGAAAATTCGAGAACGCTGAGGTTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAATGCCAAAGTTAAACTGCAAGAGAAAGGAATCACCCCATCAATTGATGTAAGTGGATAACTGGCATAACACTACAGAACAATATTGTATACCTCAAAAAACTTGAATACCATTAAACAAACAAGTTGATATCAAATTACGTTGAAGTTTGTGATTGCTAACGCTTGTTTATTTACCTCAGAGGATTGCAGAATCTCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACTGAGGTATTACAAATTTCTAACTCTGCTATTTCCCAATATCTGTTTTTCATTTTCCTTATCAAGCTAACCTCTCATTGCTTTCAGGCAATTAGCAAGGTGTTCTCACTCGACCGAGAAGCATTCCCTTCATTGAATGGTCTTCCTGGCGAAACTCATCATAGTGTAAGCCTTGAATAACAACTCAGTTTTTGCAAACTTCACATGATTTTCACTCCTTGAGTTATTTTGTTAACGTTTTGTCTTCGCAGTATATTGCAGATAATCGCCTCGAGAACAACCCGTGGCATGGAACCGACACATGGAGTCTGAAGGTAAAATGATTGGTCACCAAGTCTGAGAATGAAAAAATATATCATTTTCATTAGTAAATAAAGAATGAACAGTTTGTTAGCTTATCTAATTGAATGGTCGACTCAAATACGCTAAAAATATTGACAGATTGAGGTTAACAAACTCATAAACATGACGCTTGAGGACCGAGAAAGAGAGATCATTCGTCTTTATCACGGTTTGGACAATGAATGTCTGACATGGGAGGAAATAAGCAAACGGTAAGTGGAAGGAACTTACATGAGAAAATTGTCAATGTCATTCTAAGTTATAGCTCACAAAAGCTCTATTTGCTCTGATTTTTTCAGCATAGGTTTGTCCAGAGAAAGGGTAAGGCAAGTTGGACTAGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGATGAGGAAGATGGAAGCCATGTTGCTTAAACATTAATTTGTTAAAATATAATTACAAGTCATACGTCGTAGAGATCATCCATTGCCTACTGTATATATAAAGAAAACGAAACTGTGTTATTCGCCATTATGATTTTGATCACAAATAGCGTGACAGATAATAGGGAAAGTTTCTAGAATGAGATTTGCATATGTTGTCTGAGGAAATTATTATTGATTGGTGTTGAACACATAGTTGCCCCACATACAAAATGTGACTCAATTTTTTATGAAATACGATCTCAAGTCGATTTGTATCGATGGTTTTGTGATCCTGCAGAATCCAC

mRNA sequence

ATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCGAAGCGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGGTTTTATATCTCAATGATCATAGGTTGGGACAGAACCAAGTTTCCACTACGAAGAGTGTGGTAATAGCGAAACATTCGGCTGACTTTTCTCCGAGCTATCCACCGTCGAATCGGCACGTGCAGTGCATCAAAGCTGTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGCTTAATAACACCACCATTTGGGAAGATGAAGAAACTGATCTTAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTAGAGAAGCAATGGAATCTATCTTTCGAGCAAACTGTGTCGACCGATGTGCCTAGAGGAAAAACAGAGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGGATGAATTCTAAGAGGAAGATACAGAGCAAACATGTTTTTATGGCTCAACCAAAAATCAGTAAACAGCAAAAACCTAGTATCAGTCCTGAGCTACTCCAAAATCGATTGAGGGGCTATGTGAAAGGTTTAGTAAGTGAAGAAATACTTCCCCATTCGGAAGTTGTACGCCTTTCGAAGAAGATAAAAGTCGGTCTTGCATTGGAGGAGCATAAAACCAGGTTACCTCATGCTCTTCTTGTTCAGATTCACATAGATTACTGCTTGCCCCTTTCTTTCCATGGTGGCTTGATCGGACTTCTCCGAGGAATCGAAAAGTTTGATTCCTCAAAGGGATTCAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGCCAAAGCATAAGCCTATTGAAAAGAAAACTGGATATTTGAGTTCAAAGTATTTAATGCAAGGTGTTTCAAGAGCATTAGTTGAAAATTCGAGAACGCTGAGGTTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAATGCCAAAGTTAAACTGCAAGAGAAAGGAATCACCCCATCAATTGATAGGATTGCAGAATCTCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACTGAGGTATTACAAATTTCTAACTCTGCTATTTCCCAATATCTGTTTTTCATTTTCCTTATCAAGCTAACCTCTCATTGCTTTCAGGCAATTAGCAAGGTGTTCTCACTCGACCGAGAAGCATTCCCTTCATTGAATGGTCTTCCTGGCGAAACTCATCATAGTTATATTGCAGATAATCGCCTCGAGAACAACCCGTGGCATGGAACCGACACATGGAGTCTGAAGATTGAGGTTAACAAACTCATAAACATGACGCTTGAGGACCGAGAAAGAGAGATCATTCGTCTTTATCACGGTTTGGACAATGAATGTCTGACATGGGAGGAAATAAGCAAACGCATAGGTTTGTCCAGAGAAAGGGTAAGGCAAGTTGGACTAGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGATGAGGAAGATGGAAGCCATGTTGCTTAAACATTAATTTGTTAAAATATAATTACAAGTCATACGTCGTAGAGATCATCCATTGCCTACTGTATATATAAAGAAAACGAAACTGTGTTATTCGCCATTATGATTTTGATCACAAATAGCGTGACAGATAATAGGGAAAGTTTCTAGAATGAGATTTGCATATGTTGTCTGAGGAAATTATTATTGATTGGTGTTGAACACATAGTTGCCCCACATACAAAATGTGACTCAATTTTTTATGAAATACGATCTCAAGTCGATTTGTATCGATGGTTTTGTGATCCTGCAGAATCCAC

Coding sequence (CDS)

ATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCGAAGCGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGGTTTTATATCTCAATGATCATAGGTTGGGACAGAACCAAGTTTCCACTACGAAGAGTGTGGTAATAGCGAAACATTCGGCTGACTTTTCTCCGAGCTATCCACCGTCGAATCGGCACGTGCAGTGCATCAAAGCTGTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGCTTAATAACACCACCATTTGGGAAGATGAAGAAACTGATCTTAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTAGAGAAGCAATGGAATCTATCTTTCGAGCAAACTGTGTCGACCGATGTGCCTAGAGGAAAAACAGAGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGGATGAATTCTAAGAGGAAGATACAGAGCAAACATGTTTTTATGGCTCAACCAAAAATCAGTAAACAGCAAAAACCTAGTATCAGTCCTGAGCTACTCCAAAATCGATTGAGGGGCTATGTGAAAGGTTTAGTAAGTGAAGAAATACTTCCCCATTCGGAAGTTGTACGCCTTTCGAAGAAGATAAAAGTCGGTCTTGCATTGGAGGAGCATAAAACCAGGTTACCTCATGCTCTTCTTGTTCAGATTCACATAGATTACTGCTTGCCCCTTTCTTTCCATGGTGGCTTGATCGGACTTCTCCGAGGAATCGAAAAGTTTGATTCCTCAAAGGGATTCAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGCCAAAGCATAAGCCTATTGAAAAGAAAACTGGATATTTGAGTTCAAAGTATTTAATGCAAGGTGTTTCAAGAGCATTAGTTGAAAATTCGAGAACGCTGAGGTTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAATGCCAAAGTTAAACTGCAAGAGAAAGGAATCACCCCATCAATTGATAGGATTGCAGAATCTCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACTGAGGTATTACAAATTTCTAACTCTGCTATTTCCCAATATCTGTTTTTCATTTTCCTTATCAAGCTAACCTCTCATTGCTTTCAGGCAATTAGCAAGGTGTTCTCACTCGACCGAGAAGCATTCCCTTCATTGAATGGTCTTCCTGGCGAAACTCATCATAGTTATATTGCAGATAATCGCCTCGAGAACAACCCGTGGCATGGAACCGACACATGGAGTCTGAAGATTGAGGTTAACAAACTCATAAACATGACGCTTGAGGACCGAGAAAGAGAGATCATTCGTCTTTATCACGGTTTGGACAATGAATGTCTGACATGGGAGGAAATAAGCAAACGCATAGGTTTGTCCAGAGAAAGGGTAAGGCAAGTTGGACTAGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGATGAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Protein sequence

MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPSYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEKQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHALLVQIHIDYCLPLSFHGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKMRKMEAMLLKH

Homology

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BLAST of CmoCh02G004910 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 4.2e-148
Identity = 312/563 (55.42%), Postives = 375/563 (66.61%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAA+IGL   KRLL+SS Y+SD TEK L +NDH   Q  +++TKS + AK ++++SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWE------DEETDLKCTVEALLLLQ 120
           +P SNRH Q  KA+KE VD  S  T +PWL N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 121 KSMLEKQWNLSFEQTVSTDVPRGKT--EKKVPV-TCSGVSARQRRMNSKRKIQSKHVFMA 180
           KSMLEK WNLSFE+ VS++ P   T  +KK+PV TCSG+SARQRR+ +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 181 QPKISKQQKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLP 240
                     ++S      ++RGYVKG++SE++L H EVVRLSKKIK GL L++HK+RL 
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 241 -----------------------HALLVQIHI--------DYCLPLSF------------ 300
                                   A L++ H+        +  L +S             
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 301 ---HGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRA 360
               GGLIGLLRGIEKFDSSKGF+ISTYVYWWIR                    QGVSRA
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR--------------------QGVSRA 360

Query: 361 LVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQI 420
           LV+NSRTLRLPTHLHERLGLIRNAK++LQEKGITPSIDRIAESLNMS+KKV+NATE    
Sbjct: 361 LVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATE---- 420

Query: 421 SNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNP 480
                                  A+SKVFSLDR+AFPSLNGLPGETHHSYIAD RLENNP
Sbjct: 421 -----------------------AVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNP 480

Query: 481 WHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVG 509
           WHG D  +LK EV+KLI+ TL +RE+EIIRLY+GLD ECLTWE+ISKRIGLSRERVRQVG
Sbjct: 481 WHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVG 502

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BLAST of CmoCh02G004910 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 345.1 bits (884), Expect = 1.3e-93
Identity = 231/576 (40.10%), Postives = 312/576 (54.17%), Query Frame = 0


Query: 2   ATAAIIGLGAAKRLLNSSSYYSDFTEKVLYL---------------NDHRLGQNQVSTTK 61
           AT A+IGL A  RLL++S   +D     + L               +         +T K
Sbjct: 3   ATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPATPK 62

Query: 62  SVVIAKHSADFSPSYPPSNRHVQCIKAVKEHVD-----TPSSPTAEPWLNNTTIWEDEET 121
              +A H    SP     +   Q ++A++ H        P  P   P   +         
Sbjct: 63  LTAVAAHRLKLSP-----HGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAH 122

Query: 122 DLKCTVEALLLLQKSMLEKQWNLSFE-----QTVSTDVPRGKTEK-KVPVTCSGVSARQR 181
           DL+ ++EA++LLQ+SMLEKQW L F+       +        T K  V V  S VSARQR
Sbjct: 123 DLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQR 182

Query: 182 RMNSKRKIQSKHVFMAQPKISKQQKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSK 241
           RM+ +R+ ++K         +     ++SPEL+Q+R R Y++G VS+E+L H +VV LS 
Sbjct: 183 RMSGRRRGRTK---------NGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSH 242

Query: 242 KIKVGLALEEHKTRL--------------------PHALLVQIHIDY----CLPLS---- 301
           KIK G+ L++ +++L                    P  L  ++H  +     L +S    
Sbjct: 243 KIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRL 302

Query: 302 ------------------FHGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKK 361
                               GGLIGLLRGIEKFD+S+GF+ISTYVYWWIR          
Sbjct: 303 VISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIR---------- 362

Query: 362 TGYLSSKYLMQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESL 421
                     QGVSRAL ENS+T RLPT+LHERL  IR AK +L+++GI P+I+ IA SL
Sbjct: 363 ----------QGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSL 422

Query: 422 NMSKKKVKNATEVLQISNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPG 481
           N+S+KKV NATE                           A++KV SLD++AFPSLNGLPG
Sbjct: 423 NISEKKVLNATE---------------------------AVNKVLSLDQQAFPSLNGLPG 482

Query: 482 ETHHSYIADNRLENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEE 506
           ET HSYI D  + N+PWHG + W LK EVNKL+N TL +RER+IIRLYHG+  +C TWE+
Sbjct: 483 ETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIGKQCHTWED 517

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BLAST of CmoCh02G004910 vs. ExPASy Swiss-Prot
Match: O66381 (RNA polymerase sigma factor SigA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=sigA PE=3 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-22
Identity = 95/331 (28.70%), Postives = 160/331 (48.34%), Query Frame = 0


Query: 188 LQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHA---LLVQIHIDYC- 247
           + + +R Y+K +    +L   E + L+ +I+ G   EE K RL  A   L+V I   Y  
Sbjct: 99  INDPVRMYLKEIGRVPLLTAEEEIELATRIEQG--DEEAKRRLAEANLRLVVSIAKRYVG 158

Query: 248 -----LPLSFHGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYL 307
                L L   G + GL++ +EKFD +KGFK STY  WWIR                   
Sbjct: 159 RGMLFLDLIQEGNM-GLIKAVEKFDYNKGFKFSTYATWWIR------------------- 218

Query: 308 MQGVSRALVENSRTLRLPTHLHERLG-LIRNAKVKLQEKGITPSIDRIAESLNMSKKKVK 367
            Q ++RA+ + +RT+R+P H+ E +  LIR  +  LQ+ G  PS + +AE ++++ +KV+
Sbjct: 219 -QAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKVR 278

Query: 368 NATEVLQISNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIA 427
              E+L+I+   +                                SL    GE   S++ 
Sbjct: 279 ---EILKIAQEPV--------------------------------SLETPIGEEDDSHLG 338

Query: 428 DNRLENNPWHGTDTWSLKIEVNKLINM--TLEDREREIIRLYHGLDN-ECLTWEEISKRI 487
           D   + +    +D  + ++   +L ++  TL DRE  ++RL  GLD+    T EE+ K  
Sbjct: 339 DFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 371

Query: 488 GLSRERVRQVGLVALEKLKKAAKMRKMEAML 506
           G++RER+RQ+   AL KL+  ++ ++++  L
Sbjct: 399 GVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371

[Close]

BLAST of CmoCh02G004910 vs. ExPASy Swiss-Prot
Match: Q5HNY7 (RNA polymerase sigma factor SigA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sigA PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.9e-22
Identity = 94/328 (28.66%), Postives = 157/328 (47.87%), Query Frame = 0


Query: 188 LQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHA---LLVQIHIDYC- 247
           + + +R Y+K +    +L   E + L+K+I+ G   E  K+RL  A   L+V I   Y  
Sbjct: 95  INDPVRMYLKEIGRVNLLSAQEEIELAKRIEQG--DEIAKSRLAEANLRLVVSIAKRYVG 154

Query: 248 -----LPLSFHGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYL 307
                L L   G + GL++ +EKFD SKGFK STY  WWIR                   
Sbjct: 155 RGMLFLDLIQEGNM-GLIKAVEKFDFSKGFKFSTYATWWIR------------------- 214

Query: 308 MQGVSRALVENSRTLRLPTHLHERLG-LIRNAKVKLQEKGITPSIDRIAESLNMSKKKVK 367
            Q ++RA+ + +RT+R+P H+ E +  LIR  +  LQ+ G  P+ + I E +++  +KV+
Sbjct: 215 -QAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVR 274

Query: 368 NATEVLQISNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIA 427
              E+L+I+   +                                SL    GE   S++ 
Sbjct: 275 ---EILKIAQEPV--------------------------------SLETPIGEEDDSHLG 334

Query: 428 DNRLENNPWHGTDTWSLKIEVNKLINM--TLEDREREIIRLYHGLDN-ECLTWEEISKRI 487
           D   +      +D  + ++   +L ++  TL DRE  ++RL  GLD+    T EE+ K  
Sbjct: 335 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 364

Query: 488 GLSRERVRQVGLVALEKLKKAAKMRKME 503
           G++RER+RQ+   AL KL+  ++ ++++
Sbjct: 395 GVTRERIRQIEAKALRKLRHPSRSKRLK 364

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BLAST of CmoCh02G004910 vs. ExPASy Swiss-Prot
Match: Q8CP24 (RNA polymerase sigma factor SigA OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sigA PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.9e-22
Identity = 94/328 (28.66%), Postives = 157/328 (47.87%), Query Frame = 0


Query: 188 LQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHA---LLVQIHIDYC- 247
           + + +R Y+K +    +L   E + L+K+I+ G   E  K+RL  A   L+V I   Y  
Sbjct: 95  INDPVRMYLKEIGRVNLLSAQEEIELAKRIEQG--DEIAKSRLAEANLRLVVSIAKRYVG 154

Query: 248 -----LPLSFHGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYL 307
                L L   G + GL++ +EKFD SKGFK STY  WWIR                   
Sbjct: 155 RGMLFLDLIQEGNM-GLIKAVEKFDFSKGFKFSTYATWWIR------------------- 214

Query: 308 MQGVSRALVENSRTLRLPTHLHERLG-LIRNAKVKLQEKGITPSIDRIAESLNMSKKKVK 367
            Q ++RA+ + +RT+R+P H+ E +  LIR  +  LQ+ G  P+ + I E +++  +KV+
Sbjct: 215 -QAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVR 274

Query: 368 NATEVLQISNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIA 427
              E+L+I+   +                                SL    GE   S++ 
Sbjct: 275 ---EILKIAQEPV--------------------------------SLETPIGEEDDSHLG 334

Query: 428 DNRLENNPWHGTDTWSLKIEVNKLINM--TLEDREREIIRLYHGLDN-ECLTWEEISKRI 487
           D   +      +D  + ++   +L ++  TL DRE  ++RL  GLD+    T EE+ K  
Sbjct: 335 DFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVF 364

Query: 488 GLSRERVRQVGLVALEKLKKAAKMRKME 503
           G++RER+RQ+   AL KL+  ++ ++++
Sbjct: 395 GVTRERIRQIEAKALRKLRHPSRSKRLK 364

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BLAST of CmoCh02G004910 vs. ExPASy TrEMBL
Match: A0A6J1G739 (RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111451427 PE=3 SV=1)

HSP 1 Score: 814.7 bits (2103), Expect = 2.2e-232
Identity = 444/554 (80.14%), Postives = 449/554 (81.05%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK
Sbjct: 62  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK
Sbjct: 122 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
           PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRL   L      
Sbjct: 182 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 EQLAISLEISCAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

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BLAST of CmoCh02G004910 vs. ExPASy TrEMBL
Match: A0A6J1KWY7 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111499522 PE=3 SV=1)

HSP 1 Score: 798.5 bits (2061), Expect = 1.6e-227
Identity = 436/554 (78.70%), Postives = 444/554 (80.14%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTK VVIAKHSADFSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           Y PSNRHVQCIKAVKEHVDTPSSPTAEPWL+NTTIWEDEETDLKCTVEALLLLQKSMLEK
Sbjct: 62  YSPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTVSTD PRGKTEKKVPVTCSGVSARQRRM+SKRKIQSKHVFMAQPKISKQ K
Sbjct: 122 QWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLK 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
           P+ISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRL   L      
Sbjct: 182 PNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 EQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTW L
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWIL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

[Close]

BLAST of CmoCh02G004910 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 3.3e-212
Identity = 413/555 (74.41%), Postives = 432/555 (77.84%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MAT AIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS TKSVVIAK SA+FSPS
Sbjct: 2   MATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSPS 61

Query: 61  YPPSNRH-VQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           YP SNRH  QCIKAVKEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 62  YPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSMLE 121

Query: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQ 180
           KQWNLSFEQTVSTD+PR KT KKVPVTCSGVSARQRRM+SKRKIQSKHVFMAQPKISKQ 
Sbjct: 122 KQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 181

Query: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL----- 240
           +P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEEHKTRL   L     
Sbjct: 182 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEPS 241

Query: 241 ----------------------------LVQIHIDYCLPLS-------------FHGGLI 300
                                       L   ++   + ++               GGLI
Sbjct: 242 EDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 301

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTL 360
           GLLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTL
Sbjct: 302 GLLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTL 361

Query: 361 RLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQY 420
           RLPTHLHERLGLIRNAKVKLQEKGITPS+DRIAESLNMSKKKVKNATE            
Sbjct: 362 RLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATE------------ 421

Query: 421 LFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWS 480
                          AISKVFSLDREAFPSLNGLPGETHHSYIADN LENNPWHGTDTW 
Sbjct: 422 ---------------AISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWI 481

Query: 481 LKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK 509
           LK EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK
Sbjct: 482 LKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK 509

[Close]

BLAST of CmoCh02G004910 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 3.3e-212
Identity = 413/555 (74.41%), Postives = 432/555 (77.84%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MAT AIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS TKSVVIAK SA+FSPS
Sbjct: 2   MATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSPS 61

Query: 61  YPPSNRH-VQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           YP SNRH  QCIKAVKEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 62  YPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSMLE 121

Query: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQ 180
           KQWNLSFEQTVSTD+PR KT KKVPVTCSGVSARQRRM+SKRKIQSKHVFMAQPKISKQ 
Sbjct: 122 KQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 181

Query: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL----- 240
           +P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEEHKTRL   L     
Sbjct: 182 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEPS 241

Query: 241 ----------------------------LVQIHIDYCLPLS-------------FHGGLI 300
                                       L   ++   + ++               GGLI
Sbjct: 242 EDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 301

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTL 360
           GLLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTL
Sbjct: 302 GLLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTL 361

Query: 361 RLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQY 420
           RLPTHLHERLGLIRNAKVKLQEKGITPS+DRIAESLNMSKKKVKNATE            
Sbjct: 362 RLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATE------------ 421

Query: 421 LFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWS 480
                          AISKVFSLDREAFPSLNGLPGETHHSYIADN LENNPWHGTDTW 
Sbjct: 422 ---------------AISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWI 481

Query: 481 LKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK 509
           LK EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK
Sbjct: 482 LKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK 509

[Close]

BLAST of CmoCh02G004910 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 729.9 bits (1883), Expect = 7.1e-207
Identity = 401/554 (72.38%), Postives = 424/554 (76.53%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDF EK+LY NDHRLGQ+QVS TKSVVIAK SA+FSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           +P SNRH QCIKAVKEHVDTPSSPT EPWL N+T WEDEE DLKCTVEALLLLQKSMLEK
Sbjct: 62  FPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTV TD  RG+T+KKVPVTCSGVSARQRRM+SKRKIQSK+ FM QPKISKQ +
Sbjct: 122 QWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQLR 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
            +ISPELLQ RL+GYVKGLVSEE+L H+EVVRLSKKIKVGLALEE KTRL   L      
Sbjct: 182 STISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 DQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGF+ISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFRISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKV+LQEKGITPS+DRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADN LEN+PWHGTDTW L
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNXLENDPWHGTDTWIL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           K EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

[Close]

BLAST of CmoCh02G004910 vs. NCBI nr
Match: XP_022947612.1 (RNA polymerase sigma factor sigA-like [Cucurbita moschata] >XP_022947613.1 RNA polymerase sigma factor sigA-like [Cucurbita moschata] >XP_022947614.1 RNA polymerase sigma factor sigA-like [Cucurbita moschata] >XP_022947615.1 RNA polymerase sigma factor sigA-like [Cucurbita moschata] >XP_022947616.1 RNA polymerase sigma factor sigA-like [Cucurbita moschata] >XP_022947618.1 RNA polymerase sigma factor sigA-like [Cucurbita moschata])

HSP 1 Score: 814.7 bits (2103), Expect = 4.5e-232
Identity = 444/554 (80.14%), Postives = 449/554 (81.05%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK
Sbjct: 62  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK
Sbjct: 122 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
           PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRL   L      
Sbjct: 182 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 EQLAISLEISCAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

[Close]

BLAST of CmoCh02G004910 vs. NCBI nr
Match: KAG6605170.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035161.1 RNA polymerase sigma factor sigA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 806.6 bits (2082), Expect = 1.2e-229
Identity = 440/554 (79.42%), Postives = 447/554 (80.69%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           YPPSNRHVQCIKAVKEHVDTPSSPTAEPWL+NTTIWEDEETDLKCTVEALLLLQKSMLEK
Sbjct: 62  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTVSTD PRGKTEKKVPVTCSGVSARQRRM+SKRKIQSKHVFMAQPKISKQ K
Sbjct: 122 QWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLK 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
           PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRL   L      
Sbjct: 182 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 EQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

[Close]

BLAST of CmoCh02G004910 vs. NCBI nr
Match: XP_023533104.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533106.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 804.3 bits (2076), Expect = 6.1e-229
Identity = 439/554 (79.24%), Postives = 447/554 (80.69%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           YPPSNRHVQCIKAVKEHVDTPSSPTAEPWL+NTTIWEDEETDLKCTVEALLLLQKSMLEK
Sbjct: 62  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRM+SKRKIQSKHVF+AQPKISKQ K
Sbjct: 122 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFIAQPKISKQLK 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
           PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRL   L      
Sbjct: 182 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 EQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTW L
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWIL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

[Close]

BLAST of CmoCh02G004910 vs. NCBI nr
Match: XP_023006851.1 (RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_023006852.1 RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_023006853.1 RNA polymerase sigma factor sigA-like [Cucurbita maxima])

HSP 1 Score: 798.5 bits (2061), Expect = 3.3e-227
Identity = 436/554 (78.70%), Postives = 444/554 (80.14%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTK VVIAKHSADFSPS
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSPS 61

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLEK 120
           Y PSNRHVQCIKAVKEHVDTPSSPTAEPWL+NTTIWEDEETDLKCTVEALLLLQKSMLEK
Sbjct: 62  YSPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLEK 121

Query: 121 QWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQK 180
           QWNLSFEQTVSTD PRGKTEKKVPVTCSGVSARQRRM+SKRKIQSKHVFMAQPKISKQ K
Sbjct: 122 QWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLK 181

Query: 181 PSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL------ 240
           P+ISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRL   L      
Sbjct: 182 PNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDPSE 241

Query: 241 ---------------------------LVQIHIDYCLPLS-------------FHGGLIG 300
                                      L   ++   + ++               GGLIG
Sbjct: 242 EQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG 301

Query: 301 LLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTLR 360
           LLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTLR
Sbjct: 302 LLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTLR 361

Query: 361 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQYL 420
           LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE             
Sbjct: 362 LPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATE------------- 421

Query: 421 FFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWSL 480
                         AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTW L
Sbjct: 422 --------------AISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWIL 481

Query: 481 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 509
           KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK
Sbjct: 482 KIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 508

[Close]

BLAST of CmoCh02G004910 vs. NCBI nr
Match: XP_038902049.1 (RNA polymerase sigma factor sigA [Benincasa hispida])

HSP 1 Score: 755.7 bits (1950), Expect = 2.5e-214
Identity = 416/555 (74.95%), Postives = 434/555 (78.20%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYL-NDHRLGQNQVSTTKSVVIAKHSADFSP 60
           MATAAIIGLGAAKRLLNSSSYYSDFTEK+LY+ NDHRLGQ QVS TKSVVIAK SA+FSP
Sbjct: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKILYVNNDHRLGQTQVSPTKSVVIAKSSANFSP 61

Query: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           SYP SNRH QCIKAVKEHVDTPSSPTAEPWL+NTTIWEDEE DLKCTVEALLLLQKSMLE
Sbjct: 62  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEEIDLKCTVEALLLLQKSMLE 121

Query: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQ 180
           KQWNLSFEQTVSTD PRGKTEKKVPVTCSGVSARQRRM+SKRKIQSKHVFMAQPKISKQ 
Sbjct: 122 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 181

Query: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLPHAL----- 240
           +P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEE KTRL   L     
Sbjct: 182 RPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 241

Query: 241 ----------------------------LVQIHIDYCLPLS-------------FHGGLI 300
                                       L   ++   + ++               GGLI
Sbjct: 242 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 301

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENSRTL 360
           GLLRGIEKFDSSKGFKISTYVYWWIR                    QGVSRALVENSRTL
Sbjct: 302 GLLRGIEKFDSSKGFKISTYVYWWIR--------------------QGVSRALVENSRTL 361

Query: 361 RLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSAISQY 420
           RLPTHLHERLGLIRNAKV+LQEKGITPS+DRIAESLNMSKKKVKNATE            
Sbjct: 362 RLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATE------------ 421

Query: 421 LFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWS 480
                          AISKVFSLDREAFPSLNGLPGETHHSYIADN LENNPWHGTDTW 
Sbjct: 422 ---------------AISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWI 481

Query: 481 LKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK 509
           LK EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK
Sbjct: 482 LKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLK 509

[Close]

BLAST of CmoCh02G004910 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 526.2 bits (1354), Expect = 3.0e-149
Identity = 312/563 (55.42%), Postives = 375/563 (66.61%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAA+IGL   KRLL+SS Y+SD TEK L +NDH   Q  +++TKS + AK ++++SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWE------DEETDLKCTVEALLLLQ 120
           +P SNRH Q  KA+KE VD  S  T +PWL N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 121 KSMLEKQWNLSFEQTVSTDVPRGKT--EKKVPV-TCSGVSARQRRMNSKRKIQSKHVFMA 180
           KSMLEK WNLSFE+ VS++ P   T  +KK+PV TCSG+SARQRR+ +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 181 QPKISKQQKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLP 240
                     ++S      ++RGYVKG++SE++L H EVVRLSKKIK GL L++HK+RL 
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 241 -----------------------HALLVQIHI--------DYCLPLSF------------ 300
                                   A L++ H+        +  L +S             
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 301 ---HGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRA 360
               GGLIGLLRGIEKFDSSKGF+ISTYVYWWIR                    QGVSRA
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR--------------------QGVSRA 360

Query: 361 LVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQI 420
           LV+NSRTLRLPTHLHERLGLIRNAK++LQEKGITPSIDRIAESLNMS+KKV+NATE    
Sbjct: 361 LVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATE---- 420

Query: 421 SNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNP 480
                                  A+SKVFSLDR+AFPSLNGLPGETHHSYIAD RLENNP
Sbjct: 421 -----------------------AVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNP 480

Query: 481 WHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVG 509
           WHG D  +LK EV+KLI+ TL +RE+EIIRLY+GLD ECLTWE+ISKRIGLSRERVRQVG
Sbjct: 481 WHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISKRIGLSRERVRQVG 502

[Close]

BLAST of CmoCh02G004910 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 478.4 bits (1230), Expect = 7.1e-135
Identity = 283/529 (53.50%), Postives = 343/529 (64.84%), Query Frame = 0


Query: 1   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSPS 60
           MATAA+IGL   KRLL+SS Y+SD TEK L +NDH   Q  +++TKS + AK ++++SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 61  YPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWE------DEETDLKCTVEALLLLQ 120
           +P SNRH Q  KA+KE VD  S  T +PWL N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 121 KSMLEKQWNLSFEQTVSTDVPRGKT--EKKVPV-TCSGVSARQRRMNSKRKIQSKHVFMA 180
           KSMLEK WNLSFE+ VS++ P   T  +KK+PV TCSG+SARQRR+ +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 181 QPKISKQQKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLP 240
                     ++S      ++RGYVKG++SE++L H EVVRLSKKIK GL L++HK+RL 
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 241 -----------------------HALLVQIHI--------DYCLPLSF------------ 300
                                   A L++ H+        +  L +S             
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 301 ---HGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRA 360
               GGLIGLLRGIEKFDSSKGF+ISTYVYWWIR                    QGVSRA
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIR--------------------QGVSRA 360

Query: 361 LVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQI 420
           LV+NSRTLRLPTHLHERLGLIRNAK++LQEKGITPSIDRIAESLNMS+KKV+NATE    
Sbjct: 361 LVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATE---- 420

Query: 421 SNSAISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNP 475
                                  A+SKVFSLDR+AFPSLNGLPGETHHSYIAD RLENNP
Sbjct: 421 -----------------------AVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNP 468

[Close]

BLAST of CmoCh02G004910 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-18
Identity = 79/254 (31.10%), Postives = 115/254 (45.28%), Query Frame = 0


Query: 251 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENS 310
           G IGLLRG E+FD  +G+K+STYVYWWI+                    Q + RA+   S
Sbjct: 212 GSIGLLRGAERFDPDRGYKLSTYVYWWIK--------------------QAILRAIAHKS 271

Query: 311 RTLRLPTHLHERLGLIRNAKVKLQEK-GITPSIDRIAESLNMSKKKVKNATEVLQISNSA 370
           R ++LP  + E    +  A   L  K    PS + IAE LN++   V+ A E    S S 
Sbjct: 272 RLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVE---RSRSP 331

Query: 371 ISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGT 430
           +                        SLDR A  +     G      I     E  P    
Sbjct: 332 V------------------------SLDRVASQN-----GRMTLQEIVRGPDETRPEEMV 391

Query: 431 DTWSLKIEVNKLINMTLEDREREIIRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVA 490
               +K E+ +L+  +L  RE  ++ LY GL+ E  +++EEI K + LSRERVRQ+  +A
Sbjct: 392 KREHMKHEIEQLLG-SLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIA 412

Query: 491 LEKLKKAAKMRKME 503
           L+KL+    +  ++
Sbjct: 452 LKKLRNVHNVNDLK 412

[Close]

BLAST of CmoCh02G004910 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 78.6 bits (192), Expect = 1.6e-14
Identity = 74/258 (28.68%), Postives = 120/258 (46.51%), Query Frame = 0


Query: 251 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENS 310
           G  GL+RG EKFD++KGFK STY +WWI+                    Q V ++L + S
Sbjct: 365 GCRGLVRGAEKFDATKGFKFSTYAHWWIK--------------------QAVRKSLSDQS 424

Query: 311 RTLRLPTHLHERLGLIRNAKVKL-QEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSA 370
           R +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S K+              
Sbjct: 425 RMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKR-------------- 484

Query: 371 ISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGT 430
               L  + L               SLD++   + N  P E     IAD     +     
Sbjct: 485 ----LMAVLLSPKPPR---------SLDQKIGMNQNLKPSEV----IADPEAVTSEDILI 544

Query: 431 DTWSLKIEVNKLINMTLEDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVA 490
             + ++ +++K+++ +L  RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A
Sbjct: 545 KEF-MRQDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSA 569

Query: 491 LEKLKKAAKMRKMEAMLL 507
             KLK   +   ++  L+
Sbjct: 605 FRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CmoCh02G004910 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-12
Identity = 65/246 (26.42%), Postives = 113/246 (45.93%), Query Frame = 0


Query: 251 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQPKHKPIEKKTGYLSSKYLMQGVSRALVENS 310
           G +GL++ +EKF    G + +TY YWWIR                    Q + +++ +NS
Sbjct: 340 GSMGLMKSVEKFKPQSGCRFATYAYWWIR--------------------QSIRKSIFQNS 399

Query: 311 RTLRLPTHLHERLGLIRNA-KVKLQEKGITPSIDRIAESLNMSKKKVKNATEVLQISNSA 370
           RT+RLP +++  LG +  A K  +QE    PS + +A  + +S +K+    ++L  + + 
Sbjct: 400 RTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL---DKLLYNTRTP 459

Query: 371 ISQYLFFIFLIKLTSHCFQAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGT 430
           +S                  + +    D++           T      D+ +E  P    
Sbjct: 460 LS------------------MQQPIWSDQDT----------TFQEITPDSGIE-TPTMSV 519

Query: 431 DTWSLKIEVNKLINMTLEDREREIIRLYHGLD-NECLTWEEISKRIGLSRERVRQVGLVA 490
               ++  V  L+N+ L  +ER II+L  G+D  +  +  EI +  GLS+ERVRQ+   A
Sbjct: 520 GKQLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRA 532

Query: 491 LEKLKK 495
           L +LK+
Sbjct: 580 LYRLKQ 532

The following BLAST results are available for this feature:

BLAST of CmoCh02G004910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	4.2e-148	55.42	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	1.3e-93	40.10	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
O66381	1.6e-22	28.70	RNA polymerase sigma factor SigA OS=Bacillus halodurans (strain ATCC BAA-125 / D...	[more]
Q5HNY7	7.9e-22	28.66	RNA polymerase sigma factor SigA OS=Staphylococcus epidermidis (strain ATCC 3598...	[more]
Q8CP24	7.9e-22	28.66	RNA polymerase sigma factor SigA OS=Staphylococcus epidermidis (strain ATCC 1222...	[more]

BLAST of CmoCh02G004910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G739	2.2e-232	80.14	RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]
A0A6J1KWY7	1.6e-227	78.70	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11149952...	[more]
A0A5D3BME8	3.3e-212	74.41	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	3.3e-212	74.41	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A6J1D604	7.1e-207	72.38	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]

BLAST of CmoCh02G004910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947612.1	4.5e-232	80.14	RNA polymerase sigma factor sigA-like [Cucurbita moschata] >XP_022947613.1 RNA p...	[more]
KAG6605170.1	1.2e-229	79.42	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023533104.1	6.1e-229	79.24	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105...	[more]
XP_023006851.1	3.3e-227	78.70	RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_023006852.1 RNA pol...	[more]
XP_038902049.1	2.5e-214	74.95	RNA polymerase sigma factor sigA [Benincasa hispida]	[more]

BLAST of CmoCh02G004910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	3.0e-149	55.42	sigma factor A	[more]
AT1G64860.2	7.1e-135	53.50	sigma factor A	[more]
AT5G13730.1	1.9e-18	31.10	sigma factor 4	[more]
AT1G08540.1	1.6e-14	28.68	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.5e-12	26.42	RNApolymerase sigma-subunit F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 248..495 e-value: 1.9E-14 score: 51.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 424..502 e-value: 2.2E-20 score: 74.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 311..364 e-value: 1.4E-6 score: 30.3
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 445..494 e-value: 5.2E-11 score: 41.9
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 248..290 e-value: 6.0E-11 score: 44.5
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 385..508
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 385..508 coord: 1..232
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 1..232
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 250..282 coord: 297..364
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 250..282 coord: 297..364
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 435..493 e-value: 3.10412E-8 score: 48.2546
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 251..280 e-value: 8.6E-6 score: 25.4
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 310..362
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 421..496
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 190..280

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004910.1	CmoCh02G004910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity