CmoCh02G004500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	polyadenylate-binding protein RBP47-like
Location	Cmo_Chr02: 2351397 .. 2353561 (-)
RNA-Seq Expression	CmoCh02G004500
Synteny	CmoCh02G004500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTGCAAAAAGGTTGGTGACCTGCTGTTTATTTGGGTTTACCTTTGAATGGCAAGCCAAATTCTAATTCCTTTTTGCTGTCAATTGTTGAGAAGGTGCAGAAAAGGCTACGATCTTGGGAACCTCATATGTCAAAAGGGGGTTGATGAGACACTTATTCAAGCTACTTCGGCTAATCTCTCCATCTACCATCCATCCCTTTTTCCTATTTACTCAAAATCTTCTGCGTCTATTGAGAGATCTTTTAGGAACTTTTATTGAAGGGAAATTTTCACAACTTAAGATGGGATAAAGTTAAACACCCGTTTGAGGAAGGTGGCCTGGGGATTATTGGCCTAAAACTTAAAAATGTATCCTTAATGTTTGAATCGATTTGGCAATTTCACGAAGAAAAATTTGCTCCACGGAGGAGCGTGCAAACAACTTCTCAACAAGCATCCAACTTCTGGAGTTTTCTCCTTGAAGTTTTTGGTTGGCTTCTTCCCCCTTGATATGCAACTTTTTCTCTCTCATATGATCACTGGCCACCCTTTCAAGAAAGAAAGGAAAATCCTTTGGCTGAATTTTATTTTGGTTTCTTTTTGGTCCATGTGAATACCTCAATTCACCTATCTTTACCGAAAAGGACCTAGACCCACACTCCATACGTACCTCAATGACTTTTTTGGCACTCTCTTTGTGTAAATTGAATGCACGCTTTTGAAACTATAGTTTAACTACTCTCGTGACCAATTGGAAAATTTTTTTATTTAATTTTCTCTTATGAAATGTTGCTGTTTCTTTTTTTTTTTTTTTTTTTTTTTAATTTTAAAAATTGTATTCGTTAGATTCATAATGAAAGATTGATGAGTGTTTATACAAATATTTAGCTTTGTTTTTGGAGAGGACACTATTTCCAGTACTTACTCGAGCTTGATTTAAACTGACTCGATCATCAATTACATGCATAATAAGCGAGATTGTCCAAAAAGACTAAATGTGGGCATTAGTGAAAAAAGCACATAACCTATCTTGGCATACATTTTTTCTTCTTTTTTGTAGAAAAAATGCCGAGGATGCAATACAGGGACTGAATGGAACAGTTATTGGCAAGCAAATTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAGCAAGCAGGTTTGACCACGTGCCTTTTCCTTTTCAATGTTTGCCCATCTTTACTTGTCACTTGTCTTCTTGTGAATTTTTTTAGATTATTAGTTTTTAAAACTCAACATATGGCCTATGATCTTTAGAATATAAGTGTAGAAATGAGATTTGATGATAATTAGACACTGCTTGTATACAATATTAGACACATCAAAATCTGATGAACCCATGTCAACAACTTTGAATATATGTCGAACATTTATTGGACAAAAGGAATAATGGATTGATTTTAAAACATATGAACATTGATTTTGAAAATATGTTTATTTATGTCGAATCATCTAGAGAAATATATATTTAGTTTCTTCACACTATGTTCCACTGTTAGATCCTCAGGCATCTTTTTCATTGATCTCTCTAAACGACAATAATCGTAGCTTTTTTCCTCGGTTATATGAACACATTTTGAGGGTACTTTATCTTCAAAAGCCTTCGACGATGAACAGCCACTATTGATTCCTTTTCATATTTCTGAATAGTCTTATATTATATGTTGGCAGTGGAGAAGTGATTCTAATAACCAATGGAATGGAGGACGTTATGGAGTCCCAGGCTACGGTGGTGGATACGGTGGTTACTACGCAGTACCACAGCAGCAGGACGCAAACACGCAAGCCACAGTTGGCGCAGAGTTAATGGGTCATCTTGCCCCAGCTGCCGCAGTTAATGGCTCATCTTGAGAAAAGAGTATGACATTGCATCAAAACACCAATCTCTTAGCTTATTCACTTTGTTATAGGGAATTTATTTAAGTTGTGCTTAACTGAATCTTTATTTACCGAATCATGTGGCTTCATAACATTATTTCCTCATCATGCTTGCTACATCTGATGAACAATTTTGGGGTTTGGGTAGATTTCTACTATTATTATTATTTTTTCTTTAAGTTTAAATTTACAGATTATTATAATAATAATAATAATTATTATTATTATTATTTTCGTACATAGATGTTTGGAACCATAATGTTTAGACTATCCTAGTGACATG

mRNA sequence

ATGGGGTTGCAAAAAGGTGCAGAAAAGGCTACGATCTTGGGAACCTCATATGTCAAAAGGGGAAAAAATGCCGAGGATGCAATACAGGGACTGAATGGAACAGTTATTGGCAAGCAAATTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAGCAAGCAGTGGAGAAGTGATTCTAATAACCAATGGAATGGAGGACGTTATGGAGTCCCAGGCTACGGTGGTGGATACGGTGGTTACTACGCAGTACCACAGCAGCAGGACGCAAACACGCAAGCCACAGTTGGCGCAGAGTTAATGGGTCATCTTGCCCCAGCTGCCGCAGTTAATGGCTCATCTTGAGAAAAGAGTATGACATTGCATCAAAACACCAATCTCTTAGCTTATTCACTTTGTTATAGGGAATTTATTTAAGTTGTGCTTAACTGAATCTTTATTTACCGAATCATGTGGCTTCATAACATTATTTCCTCATCATGCTTGCTACATCTGATGAACAATTTTGGGGTTTGGGTAGATTTCTACTATTATTATTATTTTTTCTTTAAGTTTAAATTTACAGATTATTATAATAATAATAATAATTATTATTATTATTATTTTCGTACATAGATGTTTGGAACCATAATGTTTAGACTATCCTAGTGACATG

Coding sequence (CDS)

ATGGGGTTGCAAAAAGGTGCAGAAAAGGCTACGATCTTGGGAACCTCATATGTCAAAAGGGGAAAAAATGCCGAGGATGCAATACAGGGACTGAATGGAACAGTTATTGGCAAGCAAATTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAGCAAGCAGTGGAGAAGTGATTCTAATAACCAATGGAATGGAGGACGTTATGGAGTCCCAGGCTACGGTGGTGGATACGGTGGTTACTACGCAGTACCACAGCAGCAGGACGCAAACACGCAAGCCACAGTTGGCGCAGAGTTAATGGGTCATCTTGCCCCAGCTGCCGCAGTTAATGGCTCATCTTGA

Protein sequence

MGLQKGAEKATILGTSYVKRGKNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

Homology

[Close]

BLAST of CmoCh02G004500 vs. ExPASy Swiss-Prot
Match: F4I3B3 (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-13
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           ++AE+AI  LNGTVIGK  VRLSWGRS  +KQWRSDS NQWNGG     GY  GY     
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYNNGYA---- 432

Query: 82  VPQQQDANTQATVGAELMG 101
               QD+N  AT  A + G
Sbjct: 433 ---NQDSNMYATAAAAVPG 443

[Close]

BLAST of CmoCh02G004500 vs. ExPASy Swiss-Prot
Match: Q9LEB3 (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 23  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAV 82
           +A++AIQ L+G +IGKQ VRLSWGRS  +KQ R+DS +QWNGG  G   Y GGYG  Y  
Sbjct: 342 SAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNY-GGYG--YGA 401

Query: 83  PQQQDANTQATVGA 97
            Q QD+   AT  A
Sbjct: 402 SQNQDSGMYATGAA 412

[Close]

BLAST of CmoCh02G004500 vs. ExPASy Swiss-Prot
Match: Q0WW84 (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-12
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGY--GGGYGGY 81
           K+AEDAI+ LNGTVIGK  VRLSWGRS  +KQWR DS  QWNGG     GY  GGGY  +
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGYSRGHGYNNGGGYANH 426

[Close]

BLAST of CmoCh02G004500 vs. ExPASy Swiss-Prot
Match: Q9SX80 (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 23  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YA 82
           NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y 
Sbjct: 353 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG----GQFYNGYGYM 411

Query: 83  VPQ 85
           VPQ
Sbjct: 413 VPQ 411

[Close]

BLAST of CmoCh02G004500 vs. ExPASy Swiss-Prot
Match: Q9SX79 (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 23  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YA 82
           NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y 
Sbjct: 351 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG----GQFYNGYGYM 409

Query: 83  VPQ 85
           VPQ
Sbjct: 411 VPQ 409

[Close]

BLAST of CmoCh02G004500 vs. ExPASy TrEMBL
Match: A0A6J1G6T8 (polyadenylate-binding protein RBP47-like OS=Cucurbita moschata OX=3662 GN=LOC111451298 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA
Sbjct: 357 KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 416

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Sbjct: 417 VPQQQDANTQATVGAELMGHLAPAAAVNGSS 447

[Close]

BLAST of CmoCh02G004500 vs. ExPASy TrEMBL
Match: A0A6J1KYU5 (polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC111499959 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYY+
Sbjct: 361 KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYS 420

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Sbjct: 421 VPQQQDANTQATVGAELMGHLAPAAAVNGSS 451

[Close]

BLAST of CmoCh02G004500 vs. ExPASy TrEMBL
Match: A0A6J1D3C6 (polyadenylate-binding protein RBP47 OS=Momordica charantia OX=3673 GN=LOC111017220 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.1e-26
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQ +RLSWGRSTG+KQWR DSNNQWNGGRYG  GY GGY GYY+
Sbjct: 353 KNAEDAIQGLNGTVIGKQTIRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGY-GGYSGYYS 412

Query: 82  VPQQQDANTQATVGAELMG 101
           VPQ QD N  AT  AE+ G
Sbjct: 413 VPQHQDTNMNATAAAEVNG 430

[Close]

BLAST of CmoCh02G004500 vs. ExPASy TrEMBL
Match: A0A6J1JGT7 (polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC111484248 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-26
Identity = 67/91 (73.63%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQ VRLSWGRSTG+KQWR DSNNQWNGGRYG  GY GGYGGYY+
Sbjct: 353 KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGY-GGYGGYYS 412

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           +PQ QDAN  A            AAAVNG+S
Sbjct: 413 IPQHQDANMHAA-----------AAAVNGTS 431

[Close]

BLAST of CmoCh02G004500 vs. ExPASy TrEMBL
Match: A0A0A0LKZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234560 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.0e-26
Identity = 68/91 (74.73%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQ VRLSWGRSTG+KQWR DSNNQWNGGRYG   Y GGYGGYY+
Sbjct: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSY-GGYGGYYS 76

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQ QD N   T         A AAAVNGSS
Sbjct: 77  VPQHQDPNMHPT---------AAAAAVNGSS 97

[Close]

BLAST of CmoCh02G004500 vs. NCBI nr
Match: XP_022947439.1 (polyadenylate-binding protein RBP47-like [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA
Sbjct: 357 KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 416

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Sbjct: 417 VPQQQDANTQATVGAELMGHLAPAAAVNGSS 447

[Close]

BLAST of CmoCh02G004500 vs. NCBI nr
Match: KAG6605129.1 (Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA
Sbjct: 235 KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 294

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Sbjct: 295 VPQQQDANTQATVGAELMGHLAPAAAVNGSS 325

[Close]

BLAST of CmoCh02G004500 vs. NCBI nr
Match: XP_023007482.1 (polyadenylate-binding protein RBP47-like [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYY+
Sbjct: 361 KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYS 420

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Sbjct: 421 VPQQQDANTQATVGAELMGHLAPAAAVNGSS 451

[Close]

BLAST of CmoCh02G004500 vs. NCBI nr
Match: XP_023533349.1 (polyadenylate-binding protein RBP47 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.0 bits (463), Expect = 1.5e-42
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYY+
Sbjct: 356 KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYS 415

Query: 82  VPQQQDANTQATVGAELMGHLAPAAAVNGSS 113
           VPQQQ+ANTQATVGAELMGHLAPAAAVNGSS
Sbjct: 416 VPQQQEANTQATVGAELMGHLAPAAAVNGSS 446

[Close]

BLAST of CmoCh02G004500 vs. NCBI nr
Match: XP_022148600.1 (polyadenylate-binding protein RBP47 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 4.3e-26
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           KNAEDAIQGLNGTVIGKQ +RLSWGRSTG+KQWR DSNNQWNGGRYG  GY GGY GYY+
Sbjct: 353 KNAEDAIQGLNGTVIGKQTIRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGY-GGYSGYYS 412

Query: 82  VPQQQDANTQATVGAELMG 101
           VPQ QD N  AT  AE+ G
Sbjct: 413 VPQHQDTNMNATAAAEVNG 430

[Close]

BLAST of CmoCh02G004500 vs. TAIR 10
Match: AT1G49600.1 (RNA-binding protein 47A )

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-14
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYA 81
           ++AE+AI  LNGTVIGK  VRLSWGRS  +KQWRSDS NQWNGG     GY  GY     
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYNNGYA---- 432

Query: 82  VPQQQDANTQATVGAELMG 101
               QD+N  AT  A + G
Sbjct: 433 ---NQDSNMYATAAAAVPG 443

[Close]

BLAST of CmoCh02G004500 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-13
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 22  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGY--GGGYGGY 81
           K+AEDAI+ LNGTVIGK  VRLSWGRS  +KQWR DS  QWNGG     GY  GGGY  +
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGYSRGHGYNNGGGYANH 426

[Close]

BLAST of CmoCh02G004500 vs. TAIR 10
Match: AT1G47500.1 (RNA-binding protein 47C' )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 23  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YA 82
           NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y 
Sbjct: 353 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG----GQFYNGYGYM 411

Query: 83  VPQ 85
           VPQ
Sbjct: 413 VPQ 411

[Close]

BLAST of CmoCh02G004500 vs. TAIR 10
Match: AT1G47490.1 (RNA-binding protein 47C )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 36/63 (57.14%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 23  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YA 82
           NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y 
Sbjct: 351 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYG----GQFYNGYGYM 409

Query: 83  VPQ 85
           VPQ
Sbjct: 411 VPQ 409

[Close]

BLAST of CmoCh02G004500 vs. TAIR 10
Match: AT5G19350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-07
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 14  GTSYV--KRGKNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSN-NQWNGGRYGVP 73
           G  YV  K   +AE+A+Q + G VIG+Q VR+SW ++ G   W + ++ NQWN    G  
Sbjct: 273 GYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQADPNQWN----GYY 332

Query: 74  GYGGGYGGYYAVPQQQDANTQATVG 96
           GYG GY   YA    QD +  A  G
Sbjct: 333 GYGQGYDA-YAYGATQDPSVYAYGG 352

The following BLAST results are available for this feature:

BLAST of CmoCh02G004500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3B3	2.5e-13	55.70	Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P...	[more]
Q9LEB3	1.6e-12	55.41	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q0WW84	6.2e-12	63.93	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P...	[more]
Q9SX80	2.5e-08	57.14	Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'...	[more]
Q9SX79	2.5e-08	57.14	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C P...	[more]

BLAST of CmoCh02G004500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G6T8	1.1e-43	100.00	polyadenylate-binding protein RBP47-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KYU5	2.4e-43	98.90	polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1D3C6	2.1e-26	78.48	polyadenylate-binding protein RBP47 OS=Momordica charantia OX=3673 GN=LOC1110172...	[more]
A0A6J1JGT7	2.7e-26	73.63	polyadenylate-binding protein RBP47-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A0A0LKZ0	6.0e-26	74.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234560 PE=4 SV=1	[more]

BLAST of CmoCh02G004500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947439.1	2.3e-43	100.00	polyadenylate-binding protein RBP47-like [Cucurbita moschata]	[more]
KAG6605129.1	2.3e-43	100.00	Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023007482.1	5.0e-43	98.90	polyadenylate-binding protein RBP47-like [Cucurbita maxima]	[more]
XP_023533349.1	1.5e-42	97.80	polyadenylate-binding protein RBP47 [Cucurbita pepo subsp. pepo]	[more]
XP_022148600.1	4.3e-26	78.48	polyadenylate-binding protein RBP47 [Momordica charantia]	[more]

BLAST of CmoCh02G004500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49600.1	1.8e-14	55.70	RNA-binding protein 47A	[more]
AT3G19130.1	4.4e-13	63.93	RNA-binding protein 47B	[more]
AT1G47500.1	1.7e-09	57.14	RNA-binding protein 47C'	[more]
AT1G47490.1	1.7e-09	57.14	RNA-binding protein 47C	[more]
AT5G19350.1	4.7e-07	41.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 21..93
None	No IPR available	PANTHER	PTHR47640:SF9	POLYADENYLATE-BINDING PROTEIN RBP47B	coord: 21..93
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004500.1	CmoCh02G004500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding