CmoCh02G004290 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G004290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 2245206 .. 2245430 (-)
RNA-Seq ExpressionCmoCh02G004290
SyntenyCmoCh02G004290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATGGTAGAATCATGGATGAGCGAGCTGGGGAAATGGAAGAACAGAGTCGAAGCTCAAAAGAAGAAGCCATTGATGCCCAAATCCAAGCTTTGTCACCAGCGAGACCTCAAAGAATCCGAAAACAACCTTGTCATCTCTGCAGATTCCGATGACCGAGAAGCAACCTTGTCGGATTCCACCATTTGTTTGCTCATCGATCGCTTTGCTCCCTTGTGA

mRNA sequence

ATGGCAGCAATGGTAGAATCATGGATGAGCGAGCTGGGGAAATGGAAGAACAGAGTCGAAGCTCAAAAGAAGAAGCCATTGATGCCCAAATCCAAGCTTTGTCACCAGCGAGACCTCAAAGAATCCGAAAACAACCTTGTCATCTCTGCAGATTCCGATGACCGAGAAGCAACCTTGTCGGATTCCACCATTTGTTTGCTCATCGATCGCTTTGCTCCCTTGTGA

Coding sequence (CDS)

ATGGCAGCAATGGTAGAATCATGGATGAGCGAGCTGGGGAAATGGAAGAACAGAGTCGAAGCTCAAAAGAAGAAGCCATTGATGCCCAAATCCAAGCTTTGTCACCAGCGAGACCTCAAAGAATCCGAAAACAACCTTGTCATCTCTGCAGATTCCGATGACCGAGAAGCAACCTTGTCGGATTCCACCATTTGTTTGCTCATCGATCGCTTTGCTCCCTTGTGA

Protein sequence

MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLSDSTICLLIDRFAPL
Homology
BLAST of CmoCh02G004290 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1   MAAMVESWMSELGKWKNRVEAQ---KKKPLMPKSKLCHQRDLKESENNLVISADSDDRE- 60
           M+AMVESWM+ELGKW+NRVEAQ    KKPLMPKSK       K+     +  ADSDD E 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHM--ADSDDTET 96

Query: 61  ATLSDSTICLLIDRFAPL 75
           + LS+STICLLIDRFAPL
Sbjct: 97  SVLSESTICLLIDRFAPL 112

BLAST of CmoCh02G004290 vs. ExPASy TrEMBL
Match: A0A7N2MYN0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 1  MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS 60
          MA +VE+WM EL K K +V+ + +KPL  K+K     + +E +      A    RE  LS
Sbjct: 1  MATVVETWMGELAKLKEKVKVKTQKPLFSKAK----EEAEEEKEGATKEARIVQRENMLS 60

Query: 61 DSTICLLIDRFAP 74
          ++TICLL++RFAP
Sbjct: 61 ETTICLLMERFAP 69

BLAST of CmoCh02G004290 vs. ExPASy TrEMBL
Match: A0A072VH50 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_1g034290 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-04
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 1  MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS 60
          MAAMVE W+ EL K K +V   K K    K+ L  ++++       VI A  D    TLS
Sbjct: 1  MAAMVEVWIGELAKLKEKVLTNKTKISKSKNGLEEEKEVGREAQKEVIGAQRD--TTTLS 60

Query: 61 DSTICLLIDRFAP 74
          +STICLL+DRF P
Sbjct: 61 ESTICLLMDRFVP 71

BLAST of CmoCh02G004290 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0

Query: 1  MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS 60
          MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS
Sbjct: 1  MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS 60

Query: 61 DSTICLLID 70
          DSTI  + D
Sbjct: 61 DSTILCVND 69

BLAST of CmoCh02G004290 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1   MAAMVESWMSELGKWKNRVEAQ---KKKPLMPKSKLCHQRDLKESENNLVISADSDDRE- 60
           M+AMVESWM+ELGKW+NRVEAQ    KKPLMPKSK       K+     +  ADSDD E 
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHM--ADSDDTET 96

Query: 61  ATLSDSTICLLIDRFAPL 75
           + LS+STICLLIDRFAPL
Sbjct: 97  SVLSESTICLLIDRFAPL 112

BLAST of CmoCh02G004290 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-12
Identity = 50/75 (66.67%), Postives = 54/75 (72.00%), Query Frame = 0

Query: 1  MAAMVESWMSELGKWKNRVEAQ-KKKPLMPKSKLCHQRDLKESENNLVISADSDDREATL 60
          M+AMVESWMSELGKWKNRVEAQ KKKPLMPKS    Q D        V+SA SDD E   
Sbjct: 1  MSAMVESWMSELGKWKNRVEAQKKKKPLMPKSNQFLQND--------VVSAHSDDTETER 60

Query: 61 S-DSTICLLIDRFAP 74
            ++TICLLIDRFAP
Sbjct: 61 ERETTICLLIDRFAP 67

BLAST of CmoCh02G004290 vs. NCBI nr
Match: KAF3950820.1 (hypothetical protein CMV_023471 [Castanea mollissima])

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 1  MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS 60
          MAA+VE+WM EL K K +V+ + +KPL  K+K     + +E +      A    RE  LS
Sbjct: 1  MAAVVETWMGELAKLKEKVKVKTQKPLFSKAK----EEAEEEKEGATKEARIVQREYMLS 60

Query: 61 DSTICLLIDRFAP 74
          ++T+CLL++RFAP
Sbjct: 61 ETTVCLLMERFAP 69

BLAST of CmoCh02G004290 vs. NCBI nr
Match: KAF3947726.1 (hypothetical protein CMV_026176 [Castanea mollissima])

HSP 1 Score: 53.5 bits (127), Expect = 8.9e-04
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 1  MAAMVESWMSELGKWKNRVEAQKKKPLMPKSKLCHQRDLKESENNLVISADSDDREATLS 60
          MAA+VE+W+ EL K K +V+ + +KPL  K+K     +  E +      A +  RE  LS
Sbjct: 1  MAAVVETWIGELAKLKEKVKVKTQKPLFSKAK----EEAVEEKEGATKEARTVQRENMLS 60

Query: 61 DSTICLLIDRFAP 74
          ++T+CLL+DRF P
Sbjct: 61 ETTVCLLMDRFTP 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP245.1e-1364.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
A0A7N2MYN03.3e-0442.47Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A072VH509.6e-0445.21Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_1g034290 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6605111.11.4e-2594.20hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61756.11.0e-1264.10hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6571144.11.8e-1266.67hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3950820.13.0e-0442.47hypothetical protein CMV_023471 [Castanea mollissima][more]
KAF3947726.18.9e-0441.10hypothetical protein CMV_026176 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 1..74
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G004290.1CmoCh02G004290.1mRNA