CmoCh02G004180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G004180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CASP-like protein
Location	Cmo_Chr02: 2184928 .. 2187241 (+)
RNA-Seq Expression	CmoCh02G004180
Synteny	CmoCh02G004180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCTGCGGCTGATTTGGCTCTCGAAGCTCTGAGAACGTGCCACCCAAAAACAAGAAACGGCCCCCGGAAGTCTCAATTCCAACGCCCCGCCCTTTTCTGTAACACCCATCTCCGGATTCGACCTCTAAACCCCTTTTCACCGGGGAACTCGCCGGATTCTTCATCGGGACCAAAATTGAGAATCAAAATAGAGTCCGTTGATTTGGGTGTGAGCGGGTATGGTGGAGCATTGAGCGATTAAGATGAGTGGTTTTGAGGGGAAGAAGAAATGGGGAATTTGTAGAGTTAGGAATCGCATTCACCGGCGCCGCCATGGACGTGGTACCTGGGTCGGTGGGCACCGGCGGCAGTTTCTCTTTAAGACTGGGCCAGACTGTGTTTTCTTCCGCTTCGCTTCTTTTCATGTCTTTGGGTATTGAGTTCTACAGCTACACTGCTTTCTGGTGATTCCCTTTTCCCCCTTTTCTTTGGATTGCTTTTTTTATTCTGTTTTTGGTGGTTTGTATGATCCATGGAAGATGAGTTAATTGACTTGAAAACCTCTGAAATTAAGCCTTGATGGGATTTGGGTTTGTGTTCGTGTTCTTGAGATGAATGAATGTGAAGAACCTACTTGATCCTTGTTAGGATCTGTGAAGCTTTTGAATGTTCTGTTTAAGGCAACTAGTTTTGATAACGCTTGTAGGTAATATGCACATAACTTATTGGTTGAAGCATAAATTTAGTGTTGAACCTTGAGGTGTGAGTATATTTAGTATGTCATCTATGGTAGTATGCTCTTTTGTTTCTCTCCCTTTTGTGGTGGTCTTCTCTTGCTGACTTCATTGAGATTTGCCACCAAACACCTCCTTTGGATCTATCTGCAATTCTGTTGTTTCAAACTTGAGTTATATGCAAAAACAAGCTCATTCAGAAGATTTTCATAACTTTGTCCTAGGATTTGACTCGAAAGAAAACGGATCGAAGTTTATGGAATAGGTTATTCCAGATATGTAGGTGATGTGTGAGATTCCATATTGGTTGTGCTTTATAAGGGTGTGGAAACCTCTCCCTAGTTGATGTGTTTTAAAAACCTTGAGAGGAAGCTCGAAAGGAAAAGTCCAAAGAGGACAATATTTGCTAGTGGTGGGCTTGGGCTATTACAAATGGGCGATGTGCCAGCGAAGACCAAAGGAGGGTGGACATGAGGGGTGTGCTAGTGAGGAGGCTGCGCCTCGAAGGAGGTAGATATGAGGAGTGTGCCAGTAAGGAGGCTGAACCCTGAAGGGGGGTGGACACGAGGGGTGTGCTAGCGAGGAGGCTGAGTCCTGAAGGGGGCTGCACTGAGGGGTGTGCCAGCAAAGACGTTGTGCCTTGAAGGGGCGTAGATTGGAAGGTCCCATATCGATTAGAGATAGGAACGAGTGTCAGCGAGGACGTTGGGCCCGAAGGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGAGAACAAAACATTATTTATAAGGGTGTAGAAACCTCTCCCCAGTAGACGCGTTTTAGAAACCTTGAGGGAAATTCCGATACAGAAAGCCCAAAAAGGACAATATCAGCTAGCGGTGGGCTTAGGCTGTTGCATGATCCGTACATTTGGTTTAAAGTAAAATAGTCCACGAGATTATCCGAACTCGGCCGTCTATTTGTTTATCTTATAGGCTACTCTTCTAAGGATTCCATGATTTTGCTTTGGATATTAATCTTTCCATTGTTGTACATCAATGCAGCTACCTTGTGACAGTAATGGGTTTGGTCATACCCTGGAGCTTCACCTTAGCATTGGTTGATGGCTATTCAGTTCTCGTAAAATGTCCTCTTCGACAGCCCGGAATCCTCACGATCATCATCGTCGGAGATTGGGTAAGTACTTCTTCTTGAATGCCATTAAACTTTCAGTTTCATGATGCTCTAGTTTTGGTATTCAAACCATTTGAACAACAGGTGCTCTCACTTCTTACACTGGCTGCTGCTTGCTCGACGGCGAGTGTCGTCGACATACTTCTTCATTCAGACAGTTCGTATTGCCCGTCGAAGCTGTGCAGGAGATATCAAATATCTGCTGCCATGGCCTTCTTGTCATGGTTTTTGTCTTTTGCTTCTTCTCTTTTCAATCTTTGGTTACTTCCATCCTTATAGTGTTCATAACTCCTAACCTCTAATTTGCTGAAGCTATGTATCCATAGGCTTGTACACTCATTTTGTTCTGAATTAGAAATTTGTACACTTGTTTTGTTCTCAAGTTGGATGAGATTTTTAGGCGGGTTCAAAAAAATTCAATGATCCGAACGACCCAG

mRNA sequence

ATTTCTGCGGCTGATTTGGCTCTCGAAGCTCTGAGAACGTGCCACCCAAAAACAAGAAACGGCCCCCGGAAGTCTCAATTCCAACGCCCCGCCCTTTTCTGTAACACCCATCTCCGGATTCGACCTCTAAACCCCTTTTCACCGGGGAACTCGCCGGATTCTTCATCGGGACCAAAATTGAGAATCAAAATAGAGTCCGTTGATTTGGGTGTGAGCGGGTATGGTGGAGCATTGAGCGATTAAGATGAGTGGTTTTGAGGGGAAGAAGAAATGGGGAATTTGTAGAGTTAGGAATCGCATTCACCGGCGCCGCCATGGACGTGGTACCTGGGTCGGTGGGCACCGGCGGCAGTTTCTCTTTAAGACTGGGCCAGACTGTGTTTTCTTCCGCTTCGCTTCTTTTCATGTCTTTGGGTATTGAGTTCTACAGCTACACTGCTTTCTGCTACCTTGTGACAGTAATGGGTTTGGTCATACCCTGGAGCTTCACCTTAGCATTGGTTGATGGCTATTCAGTTCTCGTAAAATGTCCTCTTCGACAGCCCGGAATCCTCACGATCATCATCGTCGGAGATTGGGTGCTCTCACTTCTTACACTGGCTGCTGCTTGCTCGACGGCGAGTGTCGTCGACATACTTCTTCATTCAGACAGTTCGTATTGCCCGTCGAAGCTGTGCAGGAGATATCAAATATCTGCTGCCATGGCCTTCTTGTCATGGTTTTTGTCTTTTGCTTCTTCTCTTTTCAATCTTTGGTTACTTCCATCCTTATAGTGTTCATAACTCCTAACCTCTAATTTGCTGAAGCTATGTATCCATAGGCTTGTACACTCATTTTGTTCTGAATTAGAAATTTGTACACTTGTTTTGTTCTCAAGTTGGATGAGATTTTTAGGCGGGTTCAAAAAAATTCAATGATCCGAACGACCCAG

Coding sequence (CDS)

ATGGACGTGGTACCTGGGTCGGTGGGCACCGGCGGCAGTTTCTCTTTAAGACTGGGCCAGACTGTGTTTTCTTCCGCTTCGCTTCTTTTCATGTCTTTGGGTATTGAGTTCTACAGCTACACTGCTTTCTGCTACCTTGTGACAGTAATGGGTTTGGTCATACCCTGGAGCTTCACCTTAGCATTGGTTGATGGCTATTCAGTTCTCGTAAAATGTCCTCTTCGACAGCCCGGAATCCTCACGATCATCATCGTCGGAGATTGGGTGCTCTCACTTCTTACACTGGCTGCTGCTTGCTCGACGGCGAGTGTCGTCGACATACTTCTTCATTCAGACAGTTCGTATTGCCCGTCGAAGCTGTGCAGGAGATATCAAATATCTGCTGCCATGGCCTTCTTGTCATGGTTTTTGTCTTTTGCTTCTTCTCTTTTCAATCTTTGGTTACTTCCATCCTTATAG

Protein sequence

MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFLSWFLSFASSLFNLWLLPSL

Homology

[Close]

BLAST of CmoCh02G004180 vs. ExPASy Swiss-Prot
Match: Q10EJ2 (CASP-like protein 5C1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0767900 PE=2 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.8e-50
Identity = 96/146 (65.75%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 6   GSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALVDG 65
           G+VG+ GS  LR+GQ VFSSASLLFMS+G+EF+SYTAFC+LVT+MGLVIPWS TLA++D 
Sbjct: 10  GAVGSAGSLGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDV 69

Query: 66  YSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRRYQ 125
           YS+LV CPLR PG++ I+++GDWVL++L+LAAA S+A+V+D+LL    S+C  + C RYQ
Sbjct: 70  YSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCSPRFCGRYQ 129

Query: 126 ISAAMAFLSWFLSFASSLFNLWLLPS 152
           +SA MAFLSWFL+ ASSLFNLW + S
Sbjct: 130 LSAMMAFLSWFLTAASSLFNLWFIAS 155

[Close]

BLAST of CmoCh02G004180 vs. ExPASy Swiss-Prot
Match: B8BPI2 (CASP-like protein 5C1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38237 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.6e-49
Identity = 95/146 (65.07%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 6   GSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALVDG 65
           G+VG+ GS  LR+ Q VFSSASLLFMS+G+EF+SYTAFC+LVT+MGLVIPWS TLA++D 
Sbjct: 10  GAVGSAGSLGLRVEQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDV 69

Query: 66  YSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRRYQ 125
           YS+LV CPLR PG++ I+++GDWVL++L+LAAA S+A+V+D+LL    S+C  + C RYQ
Sbjct: 70  YSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSSAAVIDLLLQFHGSHCSPRFCGRYQ 129

Query: 126 ISAAMAFLSWFLSFASSLFNLWLLPS 152
           +SA MAFLSWFL+ ASSLFNLW + S
Sbjct: 130 LSAMMAFLSWFLTAASSLFNLWFIAS 155

[Close]

BLAST of CmoCh02G004180 vs. ExPASy Swiss-Prot
Match: B6U300 (CASP-like protein 5C1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-45
Identity = 91/146 (62.33%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 6   GSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALVDG 65
           G+VG+ GS  LR+GQ VFSSASLLFMS+G+EF+SYTAFC+LVT+MGLVIPWS TLA++D 
Sbjct: 12  GAVGSAGSLGLRVGQAVFSSASLLFMSVGVEFFSYTAFCFLVTIMGLVIPWSCTLAMIDV 71

Query: 66  YSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRRYQ 125
           YSV V CPLR PG++ I++VGD  LS+++ AAACS+A+V+D+LL    S+     C RYQ
Sbjct: 72  YSVFVGCPLRVPGVMVIVVVGDCALSIVSFAAACSSAAVIDLLLQLHGSHSSPTFCGRYQ 131

Query: 126 ISAAMAFLSWFLSFASSLFNLWLLPS 152
           +SA MAFLSW L  AS+ FNLW + S
Sbjct: 132 LSAMMAFLSWLLMAASATFNLWFVAS 157

[Close]

BLAST of CmoCh02G004180 vs. ExPASy Swiss-Prot
Match: Q3ECT8 (CASP-like protein 5C3 OS=Arabidopsis thaliana OX=3702 GN=At1g49405 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.4e-44
Identity = 93/149 (62.42%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 4   VPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALV 63
           VPGSVGT  S SLRLGQ V +  SLLFM++G+ FY +TAFCYLVT+M L IPW+ TLA+V
Sbjct: 4   VPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAMV 63

Query: 64  DGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRR 123
           D Y V+++ P ++P IL  I +GDWV+S+L LA+A S ASVVDIL  ++SS CP  +C R
Sbjct: 64  DIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESS-CPPTICNR 123

Query: 124 YQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           YQ +A +AFL+WFLS +SSLFNLWLLPSL
Sbjct: 124 YQFAATLAFLTWFLSLSSSLFNLWLLPSL 151

[Close]

BLAST of CmoCh02G004180 vs. ExPASy Swiss-Prot
Match: D7LTJ4 (CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_485429 PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-39
Identity = 84/152 (55.26%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           M+ VPGS GT  SF+LR GQT+FS+ASL+FM    +FY +T FCYL TVM +V PWS  L
Sbjct: 1   MENVPGSFGTSASFALRFGQTIFSAASLIFMCFDYDFYDFTTFCYLATVMAIVTPWSILL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           AL D YSVLVK   ++  +L+I+  GD+VLS L+L  AC+ AS  ++L  +D   C   L
Sbjct: 61  ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGNL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           C +YQ+SAA+AFL WFL  AS+LFN W LPSL
Sbjct: 121 CIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. ExPASy TrEMBL
Match: A0A6J1G621 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451131 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. ExPASy TrEMBL
Match: A0A6J1KXG7 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111499660 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILL SDSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLLSDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAFLSWFLS+ASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFLSWFLSYASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. ExPASy TrEMBL
Match: A0A0A0LP49 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G239410 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MD VPGSVGTG SFSLRLGQT FSSASLLFMSLG+EFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLAAACSTASVVDILLH DSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHLDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. ExPASy TrEMBL
Match: A0A5D3CT75 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001600 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.4e-71
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MD VPGSVGTG SFSLRLGQT FSSASLLFMSLG+EFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 14  MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAFCYLVTVMGLVIPWSFTL 73

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLAAACSTASVVDILLH D SYCPSKL
Sbjct: 74  ALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHLDGSYCPSKL 133

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 134 CRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 165

[Close]

BLAST of CmoCh02G004180 vs. ExPASy TrEMBL
Match: A0A1S3CB03 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498442 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.4e-71
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MD VPGSVGTG SFSLRLGQT FSSASLLFMSLG+EFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLAAACSTASVVDILLH D SYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHLDGSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. NCBI nr
Match: XP_022947184.1 (CASP-like protein 5C1 [Cucurbita moschata] >XP_023533781.1 CASP-like protein 5C1 [Cucurbita pepo subsp. pepo] >KAG6605092.1 CASP-like protein 5C1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. NCBI nr
Match: XP_023007057.1 (CASP-like protein 5C1 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 6.3e-73
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILL SDSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLLSDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAFLSWFLS+ASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFLSWFLSYASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. NCBI nr
Match: XP_038901622.1 (CASP-like protein 5C1 [Benincasa hispida])

HSP 1 Score: 280.4 bits (716), Expect = 9.1e-72
Identity = 145/152 (95.39%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MD VPGSVGTG SFSLRLGQTVFSSASLLFMS+G+EFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSVGVEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. NCBI nr
Match: XP_004145336.1 (CASP-like protein 5C1 [Cucumis sativus] >KGN61776.1 hypothetical protein Csa_006746 [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-71
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MD VPGSVGTG SFSLRLGQT FSSASLLFMSLG+EFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLAAACSTASVVDILLH DSSYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHLDSSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. NCBI nr
Match: XP_008459268.1 (PREDICTED: CASP-like protein 5C1 [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 143/152 (94.08%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           MD VPGSVGTG SFSLRLGQT FSSASLLFMSLG+EFYSYTAFCYLVTVMGLVIPWSFTL
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAFCYLVTVMGLVIPWSFTL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           ALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLAAACSTASVVDILLH D SYCPSKL
Sbjct: 61  ALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHLDGSYCPSKL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           CRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 CRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. TAIR 10
Match: AT1G49405.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 178.3 bits (451), Expect = 4.6e-45
Identity = 93/149 (62.42%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 4   VPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALV 63
           VPGSVGT  S SLRLGQ V +  SLLFM++G+ FY +TAFCYLVT+M L IPW+ TLA+V
Sbjct: 4   VPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAFCYLVTIMSLAIPWNLTLAMV 63

Query: 64  DGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRR 123
           D Y V+++ P ++P IL  I +GDWV+S+L LA+A S ASVVDIL  ++SS CP  +C R
Sbjct: 64  DIYCVILQQPFQKPRILLAISIGDWVVSVLALASASSAASVVDILRSNESS-CPPTICNR 123

Query: 124 YQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           YQ +A +AFL+WFLS +SSLFNLWLLPSL
Sbjct: 124 YQFAATLAFLTWFLSLSSSLFNLWLLPSL 151

[Close]

BLAST of CmoCh02G004180 vs. TAIR 10
Match: AT3G50810.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 161.4 bits (407), Expect = 5.8e-40
Identity = 83/152 (54.61%), Postives = 106/152 (69.74%), Query Frame = 0


Query: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTL 60
           M+ VPGS GT  SF+LR GQT+FS+ASL+FM    +FY +T FCYL  VM +V PWS  L
Sbjct: 1   MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTFCYLAMVMAIVTPWSILL 60

Query: 61  ALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL 120
           AL D YSVLVK   ++  +L+I+  GD+VLS L+L  AC+ AS  ++L  +D   C   L
Sbjct: 61  ALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLGGACAVASATELLASADGKICDGSL 120

Query: 121 CRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 153
           C +YQ+SAA+AFL WFL  AS+LFN W LPSL
Sbjct: 121 CIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]

BLAST of CmoCh02G004180 vs. TAIR 10
Match: AT4G37235.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-36
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 7   SVGTGGSFSLRLGQTVFSSASLLFMSLG--IEFYSYTAFCYLVTVMGLVIPWSFTLALVD 66
           S GT  SF LRLGQT+FSSASLLFM      +FY+YT FCYLVTVMGLV PWS TLAL++
Sbjct: 7   SFGTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTFCYLVTVMGLVTPWSVTLALME 66

Query: 67  GYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRRY 126
            YS+LVK    Q  ++++I+ GD+VLS L+L  ACSTASV  +L+ +       K C RY
Sbjct: 67  AYSILVKKLPMQATVISVIVAGDFVLSFLSLGGACSTASVAVLLMDAG-----EKQCDRY 126

Query: 127 QISAAMAFLSWFLSFASSLFNLWLLPSL 153
           ++SA MAFLS FLSFAS+ FN  LLPSL
Sbjct: 127 KLSATMAFLSSFLSFASTFFNFCLLPSL 149

[Close]

BLAST of CmoCh02G004180 vs. TAIR 10
Match: AT5G02060.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-25
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 6   GSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALVDG 65
           GS GT     LRLGQ   ++AS+  M    +F +YTAFC+LV  MGL + WSF LA +D 
Sbjct: 6   GSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAFCFLVASMGLQLIWSFGLACLDV 65

Query: 66  YSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYC---PSKLCR 125
           Y++  K  LR P +L++  VGDWV +LL LAAACS+A V  +L   D+ +C   P+  C 
Sbjct: 66  YAIRRKSDLRSPILLSLFTVGDWVTALLALAAACSSAGVT-VLFTKDTEFCRQQPALSCD 125

Query: 126 RYQISAAMAFLSWFLSFASSLFNLWLL 150
           R+QIS  ++F +WFL+  SS    W+L
Sbjct: 126 RFQISVGLSFFNWFLAAISSHTMFWIL 151

[Close]

BLAST of CmoCh02G004180 vs. TAIR 10
Match: AT3G23200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-24
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 4   VPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAFCYLVTVMGLVIPWSFTLALV 63
           +PG+ GT     LR+ Q VF++ S+ +M     F+S+TAFCYL+  MGL + WSF LA++
Sbjct: 4   IPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGLAIL 63

Query: 64  DGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKL-CR 123
           D ++++ K  L  P ++++ +VGDWV S L+LA A S+A +  +L   D   C  +  C 
Sbjct: 64  DTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGIT-VLYFGDLGSCSFEAECW 123

Query: 124 RYQISAAMAFLSWFLSFASSLFNLWLLPS 152
           +YQ+S A+AFL W     SSL  LWLL S
Sbjct: 124 KYQLSVALAFLCWITIAVSSLTTLWLLAS 151

The following BLAST results are available for this feature:

BLAST of CmoCh02G004180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10EJ2	7.8e-50	65.75	CASP-like protein 5C1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0767900 P...	[more]
B8BPI2	6.6e-49	65.07	CASP-like protein 5C1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38237 PE=2 S...	[more]
B6U300	7.6e-45	62.33	CASP-like protein 5C1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
Q3ECT8	6.4e-44	62.42	CASP-like protein 5C3 OS=Arabidopsis thaliana OX=3702 GN=At1g49405 PE=2 SV=1	[more]
D7LTJ4	2.1e-39	55.26	CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata OX=81972...	[more]

BLAST of CmoCh02G004180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G621	7.3e-75	100.00	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451131 PE=3 SV=1	[more]
A0A6J1KXG7	3.1e-73	98.68	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111499660 PE=3 SV=1	[more]
A0A0A0LP49	2.9e-71	94.74	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G239410 PE=3 SV=1	[more]
A0A5D3CT75	8.4e-71	94.08	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00...	[more]
A0A1S3CB03	8.4e-71	94.08	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498442 PE=3 SV=1	[more]

BLAST of CmoCh02G004180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947184.1	1.5e-74	100.00	CASP-like protein 5C1 [Cucurbita moschata] >XP_023533781.1 CASP-like protein 5C1...	[more]
XP_023007057.1	6.3e-73	98.68	CASP-like protein 5C1 [Cucurbita maxima]	[more]
XP_038901622.1	9.1e-72	95.39	CASP-like protein 5C1 [Benincasa hispida]	[more]
XP_004145336.1	5.9e-71	94.74	CASP-like protein 5C1 [Cucumis sativus] >KGN61776.1 hypothetical protein Csa_006...	[more]
XP_008459268.1	1.7e-70	94.08	PREDICTED: CASP-like protein 5C1 [Cucumis melo]	[more]

BLAST of CmoCh02G004180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49405.1	4.6e-45	62.42	Uncharacterised protein family (UPF0497)	[more]
AT3G50810.1	5.8e-40	54.61	Uncharacterised protein family (UPF0497)	[more]
AT4G37235.1	3.9e-36	59.46	Uncharacterised protein family (UPF0497)	[more]
AT5G02060.1	5.2e-25	45.58	Uncharacterised protein family (UPF0497)	[more]
AT3G23200.1	4.4e-24	42.28	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 10..137 e-value: 4.1E-24 score: 85.1
IPR045009	CASP-like protein 5	PANTHER	PTHR32021	CASP-LIKE PROTEIN 5B3	coord: 1..151
None	No IPR available	PANTHER	PTHR32021:SF32	CASP-LIKE PROTEIN 5C3	coord: 1..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G004180.1	CmoCh02G004180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane