CmoCh02G004140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G004140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 2139620 .. 2140178 (+)
RNA-Seq ExpressionCmoCh02G004140
SyntenyCmoCh02G004140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGACTTCACTAAGTGCATGGACCCGAGTTTGGAAGTAATCTTTTTGATTTTTGAGTTCATAGTCAAATGGGTCACAAAATTATTTATTAGATTCAAAATTTTAAAATTTAAGAACAAATAAATGGATCGTTAAGCCCTCTTCTCAGTCTTCAATTTCGCCTTCGTATCGAGCAGGTGGCCGGCAGATCGATTGAAGATTTGCAGTTGGTCGGAGCAGAAGATTTGTGGTTTGCCTCGCCCCCTTTTCTCTTTCGGTATTATTATCATTTCTTTATCTTTCTCCTAAAGTTCGAACAGATCCAATAAGGGAGGAGGAGCCCTAGACGCTTTTCAAATTCGATTTTCGTGGATTGTTCTCTTTTTCGTTGATTCTGGTCTTGTTCTTCTCTTGTTCTTGCTTAATTTTATCCTCTTCCTTCGCTTCAGCATCATCAGTTTCTCCATTCAGCCAATTTGCCACCCCCGATCTAAAAAAAGACGGTGCGATGGCCCGAATGATCCTCTTTGCAAAGATGCCAATCAGAACTGTATACTGTACAATTCTGTAGCCTGA

mRNA sequence

ATGGTGGCCGGCAGATCGATTGAAGATTTGCAGTTGGTCGGAGCAGAAGATTTGTGGTTTGCCTCGCCCCCTTTTCTCTTTCGCATCATCAGTTTCTCCATTCAGCCAATTTGCCACCCCCGATCTAAAAAAAGACGGTGCGATGGCCCGAATGATCCTCTTTGCAAAGATGCCAATCAGAACTGTATACTGTACAATTCTGTAGCCTGA

Coding sequence (CDS)

ATGGTGGCCGGCAGATCGATTGAAGATTTGCAGTTGGTCGGAGCAGAAGATTTGTGGTTTGCCTCGCCCCCTTTTCTCTTTCGCATCATCAGTTTCTCCATTCAGCCAATTTGCCACCCCCGATCTAAAAAAAGACGGTGCGATGGCCCGAATGATCCTCTTTGCAAAGATGCCAATCAGAACTGTATACTGTACAATTCTGTAGCCTGA

Protein sequence

MVAGRSIEDLQLVGAEDLWFASPPFLFRIISFSIQPICHPRSKKRRCDGPNDPLCKDANQNCILYNSVA
Homology
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BLAST of CmoCh02G004140 vs. NCBI nr
Match: KAG6605089.1 (Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 5.5e-08
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 2  VAGRSIEDLQLVGAEDLWFASPPFLFRIISFSIQPICHPRSKKRRCDGPND 53
          VAGRS+EDLQLVGAEDL       L  IISFSIQPICHPRSKKRR +  +D
Sbjct: 30 VAGRSVEDLQLVGAEDLQLVGAEDLC-IISFSIQPICHPRSKKRRLNRYSD 79

The following BLAST results are available for this feature:
BLAST of CmoCh02G004140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G004140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G004140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605089.15.5e-0870.59Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyr... [more]
BLAST of CmoCh02G004140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G004140.1CmoCh02G004140.1mRNA